Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4497

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
1,421,907	+				-0.1
1,421,908	-				-0.1
1,422,300	+		GFF4496	0.48	+0.9
1,422,301	-		GFF4496	0.48	+0.8
1,422,301	-		GFF4496	0.48	-0.3
1,422,301	-		GFF4496	0.48	+0.1
1,422,609	+		GFF4496	0.88	-0.5
1,422,609	+		GFF4496	0.88	+0.2
1,422,609	+		GFF4496	0.88	+0.4
1,422,609	+		GFF4496	0.88	-0.3
1,422,610	-		GFF4496	0.88	+0.6
1,422,811	+				-1.0
1,422,812	-				-0.4
1,423,291	+		GFF4497	0.37	-0.3
1,423,292	-		GFF4497	0.37	-1.8
1,423,292	-		GFF4497	0.37	+1.1
1,423,292	-		GFF4497	0.37	+0.1
1,423,396	+		GFF4497	0.44	+0.2
1,423,396	+		GFF4497	0.44	+0.2
1,423,396	+		GFF4497	0.44	+0.5
1,423,396	+		GFF4497	0.44	-0.2
1,423,396	+		GFF4497	0.44	+0.2
1,423,396	+		GFF4497	0.44	+0.3
1,423,397	-		GFF4497	0.44	+0.4
1,423,397	-		GFF4497	0.44	-1.6
1,423,397	-		GFF4497	0.44	-0.3
1,423,397	-		GFF4497	0.44	-0.3
1,423,397	-		GFF4497	0.44	-0.5
1,423,402	+		GFF4497	0.44	+1.0
1,423,402	+		GFF4497	0.44	+1.4
1,423,402	+		GFF4497	0.44	+0.4
1,423,402	+		GFF4497	0.44	-0.2
1,423,402	+		GFF4497	0.44	-0.1
1,423,402	+		GFF4497	0.44	-0.3
1,423,402	+		GFF4497	0.44	-0.3
1,423,402	+		GFF4497	0.44	-0.7
1,423,402	+		GFF4497	0.44	+0.6
1,423,402	+		GFF4497	0.44	-0.0
1,423,403	-		GFF4497	0.44	+0.1
1,423,403	-		GFF4497	0.44	+0.2
1,423,403	-		GFF4497	0.44	-0.6
1,423,403	-		GFF4497	0.44	+0.0
1,423,403	-		GFF4497	0.44	+0.1
1,423,403	-		GFF4497	0.44	+0.7
1,423,403	-		GFF4497	0.44	-0.5
1,423,403	-		GFF4497	0.44	+0.7
1,423,403	-		GFF4497	0.44	+0.0
1,423,492	+		GFF4497	0.50	+0.6
1,423,492	+		GFF4497	0.50	-0.6
1,423,493	-		GFF4497	0.50	-1.6
1,423,493	-		GFF4497	0.50	-0.2
1,423,493	-		GFF4497	0.50	-0.4
1,423,501	+		GFF4497	0.51	-0.9
1,423,501	+		GFF4497	0.51	+0.6
1,423,501	+		GFF4497	0.51	+0.2
1,423,501	+		GFF4497	0.51	+0.1
1,423,501	+		GFF4497	0.51	-0.2
1,423,502	-		GFF4497	0.51	+0.2
1,423,502	-		GFF4497	0.51	+0.3
1,423,502	-		GFF4497	0.51	+0.0
1,423,657	+		GFF4497	0.61	+0.4
1,423,658	-		GFF4497	0.61	+0.2
1,423,735	+		GFF4497	0.66	+0.8
1,423,736	-		GFF4497	0.66	-0.1
1,423,819	+		GFF4497	0.72	-0.1
1,423,829	-		GFF4497	0.72	-0.2
1,424,238	+				+0.6
1,424,239	-				-0.2
1,424,239	-				+0.6
1,424,239	-				+0.1
1,424,239	-				+0.3
1,424,249	+				-0.1
1,424,249	+				-0.4
1,424,249	+				-0.1
1,424,249	+				-0.2
1,424,249	+				-0.5
1,424,249	+				+0.2
1,424,249	+				+0.4
1,424,249	+				+0.0
1,424,249	+				+0.0
1,424,249	+				+0.0
1,424,249	+				+1.1
1,424,249	+				-0.9
1,424,249	+				-0.1
1,424,249	+				+0.3
1,424,249	+				+0.2
1,424,250	-				-0.1
1,424,250	-				-0.8
1,424,250	-				-0.4
1,424,250	-				-0.5
1,424,250	-				+0.7
1,424,250	-				+1.1
1,424,250	-				+0.2
1,424,250	-				+0.2
1,424,250	-				-0.6
1,424,250	-				-1.6
1,424,250	-				+0.4
1,424,250	-				-0.0
1,424,250	-				+0.4
1,424,250	-				+0.7
1,424,250	-				-0.1
1,424,250	-				-0.1
1,424,250	-				-0.2
1,424,260	+				-0.6
1,424,260	+				-0.4
1,424,261	-				-0.2
1,424,261	-				+0.9
1,424,261	-				+0.1
1,424,285	+				+0.4
1,424,285	+				+0.2
1,424,285	+				+0.3
1,424,286	-				+0.8
1,424,286	-				-0.3
1,424,349	+				-1.0
1,424,349	+				-0.1
1,424,350	-				-0.1
1,424,350	-				-0.2
1,424,350	-				-1.4
1,424,350	-				-0.1
1,424,357	+				+1.0
1,424,358	-				-1.0
1,424,358	-				-0.9
1,424,358	-				-0.3
1,424,360	+				+0.2
1,424,360	+				-1.6
1,424,361	-				-0.1
1,424,361	-				+0.7
1,424,361	-				-0.3
1,424,503	+				+0.4
1,424,503	+				-0.6
1,424,505	-				-0.1
1,424,620	+				+0.1
1,424,620	+				+0.2
1,424,620	+				+0.2
1,424,620	+				-0.6
1,424,620	+				-0.3
1,424,620	+				+0.4
1,424,620	+				-0.3
1,424,620	+				-0.1
1,424,620	+				-0.2
1,424,620	+				+0.0
1,424,620	+				+0.4
1,424,620	+				-0.0
1,424,620	+				-0.0
1,424,620	+				-0.1
1,424,620	+				-0.5
1,424,621	-				-0.0
1,424,621	-				-0.1
1,424,621	-				+0.7
1,424,621	-				-0.1
1,424,621	-				+0.6
1,424,621	-				+1.1
1,424,621	-				-0.2
1,424,621	-				+0.3
1,424,621	-				-0.0
1,424,621	-				-0.9
1,424,621	-				+0.3
1,424,621	-				-0.1
1,424,621	-				-0.4
1,424,621	-				+0.3
1,424,621	-				+0.3
1,424,621	-				+0.8
1,424,863	-				+0.0
1,425,232	+		GFF4498	0.22	+0.3
1,425,232	+		GFF4498	0.22	-0.0
1,425,232	+		GFF4498	0.22	-0.3
1,425,232	+		GFF4498	0.22	-0.7
1,425,233	-		GFF4498	0.22	+0.0
1,425,233	-		GFF4498	0.22	-1.3
1,425,233	-		GFF4498	0.22	-0.0
1,425,233	-		GFF4498	0.22	-0.4
1,425,233	-		GFF4498	0.22	-0.3