Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4280

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
1,204,339	+				-0.2
1,204,339	+				+0.1
1,204,339	+				-0.3
1,204,339	+				+0.1
1,204,340	-				-0.5
1,204,340	-				+0.5
1,204,382	+				-1.9
1,204,382	+				-1.9
1,204,382	+				-3.4
1,204,382	+				-1.2
1,204,382	+				+1.8
1,204,382	+				-0.7
1,204,382	+				-2.7
1,204,382	+				+0.1
1,204,382	+				-1.0
1,204,382	+				-1.4
1,204,382	+				-1.6
1,204,382	+				-1.2
1,204,382	+				-1.5
1,204,382	+				-1.7
1,204,382	+				-2.6
1,204,382	+				-3.8
1,205,139	-				+0.2
1,205,173	+				+0.0
1,205,173	+				-0.3
1,205,173	+				+1.3
1,205,173	+				+0.1
1,205,173	+				-0.0
1,205,174	-				-0.4
1,205,176	+				+0.3
1,205,176	+				-0.3
1,205,176	+				-0.2
1,205,176	+				-0.1
1,205,176	+				-0.0
1,205,176	+				-0.1
1,205,176	+				-1.3
1,205,176	+				+0.8
1,205,176	+				-0.0
1,205,176	+				-0.1
1,205,177	-				+0.3
1,205,177	-				+0.1
1,205,177	-				-0.8
1,205,177	-				-0.7
1,205,285	+				-0.0
1,205,285	+				+0.9
1,205,286	-				-0.6
1,205,286	-				+0.0
1,205,286	-				+0.0
1,205,327	+				-0.5
1,205,327	+				-2.2
1,205,328	-				-1.6
1,205,328	-				-0.0
1,205,608	+		GFF4280	0.18	-0.6
1,205,609	-		GFF4280	0.18	-1.3
1,205,609	-		GFF4280	0.18	+0.4
1,205,609	-		GFF4280	0.18	-1.6
1,205,609	-		GFF4280	0.18	-2.1
1,205,684	+		GFF4280	0.23	+1.2
1,205,684	+		GFF4280	0.23	-3.0
1,205,684	+		GFF4280	0.23	-0.9
1,205,684	+		GFF4280	0.23	-0.2
1,205,684	+		GFF4280	0.23	-0.2
1,205,684	+		GFF4280	0.23	-0.5
1,205,684	+		GFF4280	0.23	-0.2
1,205,684	+		GFF4280	0.23	-0.8
1,205,685	-		GFF4280	0.23	-0.3
1,205,685	-		GFF4280	0.23	-0.4
1,205,685	-		GFF4280	0.23	-0.6
1,205,822	+		GFF4280	0.31	+0.3
1,205,822	+		GFF4280	0.31	-0.8
1,205,822	+		GFF4280	0.31	+1.0
1,205,823	-		GFF4280	0.31	-1.3
1,205,823	-		GFF4280	0.31	-0.9
1,206,173	+		GFF4280	0.52	-0.7
1,206,173	+		GFF4280	0.52	-0.3
1,206,174	-		GFF4280	0.52	-0.4
1,206,174	-		GFF4280	0.52	-0.9
1,206,274	+		GFF4280	0.57	-0.2
1,206,275	+		GFF4280	0.58	-0.2
1,206,275	+		GFF4280	0.58	-0.8
1,206,275	+		GFF4280	0.58	+0.9
1,206,275	+		GFF4280	0.58	-0.5
1,206,275	+		GFF4280	0.58	+0.9
1,206,275	+		GFF4280	0.58	+0.9
1,206,275	+		GFF4280	0.58	-0.2
1,206,276	-		GFF4280	0.58	-0.8
1,206,276	-		GFF4280	0.58	-1.1
1,206,276	-		GFF4280	0.58	-0.8
1,206,276	-		GFF4280	0.58	-2.4
1,206,293	+		GFF4280	0.59	-0.5
1,206,293	+		GFF4280	0.59	+0.2
1,206,293	+		GFF4280	0.59	+0.1
1,206,293	+		GFF4280	0.59	-0.0
1,206,293	+		GFF4280	0.59	+0.3
1,206,293	+		GFF4280	0.59	-0.5
1,206,294	-		GFF4280	0.59	-0.9
1,206,294	-		GFF4280	0.59	-0.2
1,206,294	-		GFF4280	0.59	-0.7
1,206,294	-		GFF4280	0.59	-0.6
1,206,294	-		GFF4280	0.59	-0.9
1,206,294	-		GFF4280	0.59	-0.5
1,206,294	-		GFF4280	0.59	-0.6
1,206,294	-		GFF4280	0.59	-0.4
1,206,294	-		GFF4280	0.59	-0.7
1,206,294	-		GFF4280	0.59	-0.6
1,206,294	-		GFF4280	0.59	-1.0
1,206,377	+		GFF4280	0.64	-0.2
1,206,377	+		GFF4280	0.64	-1.2
1,206,377	+		GFF4280	0.64	-0.4
1,206,377	+		GFF4280	0.64	-0.1
1,206,377	+		GFF4280	0.64	+0.2
1,206,377	+		GFF4280	0.64	-0.2
1,206,377	+		GFF4280	0.64	-0.6
1,206,378	-		GFF4280	0.64	+0.0
1,206,378	-		GFF4280	0.64	-0.7
1,206,378	-		GFF4280	0.64	-0.9
1,206,378	-		GFF4280	0.64	+0.6
1,206,378	-		GFF4280	0.64	+1.7
1,206,413	+		GFF4280	0.66	-0.3
1,206,413	+		GFF4280	0.66	+0.0
1,206,413	+		GFF4280	0.66	-0.5
1,206,413	+		GFF4280	0.66	+0.0
1,206,413	+		GFF4280	0.66	-0.2
1,206,413	+		GFF4280	0.66	+0.1
1,206,413	+		GFF4280	0.66	-0.3
1,206,413	+		GFF4280	0.66	-0.4
1,206,413	+		GFF4280	0.66	-0.9
1,206,414	-		GFF4280	0.66	+0.1
1,206,414	-		GFF4280	0.66	-1.3
1,206,414	-		GFF4280	0.66	-1.0
1,206,414	-		GFF4280	0.66	-1.2
1,206,414	-		GFF4280	0.66	-1.7
1,206,414	-		GFF4280	0.66	-1.0
1,206,414	-		GFF4280	0.66	-0.2
1,206,414	-		GFF4280	0.66	+0.3
1,206,414	-		GFF4280	0.66	+0.0
1,206,464	+		GFF4280	0.69	-1.2
1,206,464	+		GFF4280	0.69	+0.2
1,206,465	-		GFF4280	0.69	-1.4
1,206,465	-		GFF4280	0.69	-1.6
1,206,482	+		GFF4280	0.70	-0.7
1,206,482	+		GFF4280	0.70	-1.0
1,206,482	+		GFF4280	0.70	-0.0
1,206,482	+		GFF4280	0.70	-0.7
1,206,482	+		GFF4280	0.70	+0.1
1,206,483	-		GFF4280	0.70	-0.8
1,206,483	-		GFF4280	0.70	-0.6
1,206,602	+		GFF4280	0.77	+0.4
1,206,603	-		GFF4280	0.77	+0.9
1,206,794	+		GFF4280	0.88	+1.2
1,206,794	+		GFF4280	0.88	-1.0
1,206,795	-		GFF4280	0.88	-0.1
1,206,795	-		GFF4280	0.88	+0.3
1,206,795	-		GFF4280	0.88	+0.0
1,206,842	+				+0.4
1,206,842	+				+1.2
1,206,842	+				-0.3
1,206,842	+				-0.5
1,206,842	+				-0.2
1,206,842	+				-0.5
1,206,842	+				+0.3
1,206,842	+				+0.1
1,206,843	-				+0.4
1,206,843	-				+0.2
1,206,843	-				-0.5
1,206,843	-				-0.8
1,206,843	-				+0.4
1,206,843	-				-0.2
1,206,967	+				-0.9
1,206,967	+				+0.1
1,206,967	+				-0.5
1,206,967	+				-0.3
1,206,967	+				-0.2
1,206,967	+				-0.1
1,206,967	+				+0.2
1,206,967	+				-0.7
1,206,967	+				+0.3
1,206,967	+				-0.1
1,206,967	+				+0.1
1,206,967	+				-0.2
1,206,967	+				+0.1
1,206,967	+				+0.6
1,206,967	+				-0.1
1,206,968	-				+0.6
1,206,968	-				-0.5
1,206,968	-				-0.0
1,206,968	-				-0.0
1,206,968	-				-0.3
1,206,968	-				-0.5
1,206,968	-				+1.1
1,206,968	-				-0.2
1,206,968	-				+0.2
1,206,968	-				-0.4
1,206,968	-				+0.0
1,206,968	-				-0.2
1,206,968	-				-0.6
1,206,968	-				+0.1
1,206,968	-				-0.3
1,206,968	-				-0.1
1,207,012	+				+0.1
1,207,012	+				+0.2
1,207,012	+				+0.2
1,207,012	+				+0.0
1,207,013	-				+0.4
1,207,013	-				+0.7
1,207,013	-				+0.1
1,207,554	-		GFF4281	0.34	+0.7
1,207,554	-		GFF4281	0.34	-1.7
1,207,554	-		GFF4281	0.34	+0.4
1,207,554	-		GFF4281	0.34	-0.3
1,207,554	-		GFF4281	0.34	+0.3
1,207,572	-		GFF4281	0.35	+0.4
1,207,796	+		GFF4281	0.49	+0.0
1,207,967	+		GFF4281	0.61	+0.3
1,207,967	+		GFF4281	0.61	-0.6
1,207,967	+		GFF4281	0.61	-0.2
1,207,967	+		GFF4281	0.61	-0.8
1,207,967	+		GFF4281	0.61	-1.1
1,207,967	+		GFF4281	0.61	-1.1
1,207,967	+		GFF4281	0.61	-0.6
1,207,968	-		GFF4281	0.61	-1.4
1,207,968	-		GFF4281	0.61	-1.7
1,207,968	-		GFF4281	0.61	-0.2
1,207,968	-		GFF4281	0.61	-0.2
1,207,968	-		GFF4281	0.61	-0.0
1,207,968	-		GFF4281	0.61	+0.4