Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4187

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
1,103,106	+				-0.2
1,103,106	+				+0.0
1,103,106	+				-0.9
1,103,106	+				+0.1
1,103,106	+				+0.2
1,103,107	-				+0.3
1,103,127	+				-0.9
1,103,128	-				+0.0
1,103,128	-				-0.2
1,103,128	-				+0.9
1,103,146	+				-0.8
1,103,152	+				+0.3
1,103,153	-				+0.5
1,103,171	+				-0.5
1,103,171	+				-0.9
1,103,171	+				+0.6
1,103,171	+				+0.0
1,103,171	+				+0.3
1,103,171	+				+0.1
1,103,171	+				+0.3
1,103,172	-				+0.6
1,103,172	-				+0.4
1,103,172	-				+0.1
1,103,172	-				-0.1
1,103,172	-				-0.2
1,103,172	-				-0.4
1,103,172	-				+0.2
1,103,172	-				-0.2
1,103,172	-				-0.2
1,103,172	-				+0.4
1,103,173	+				+0.1
1,103,173	+				-0.1
1,103,173	+				-1.2
1,103,173	+				-0.7
1,103,173	+				+0.0
1,103,173	+				-0.1
1,103,173	+				-0.2
1,103,173	+				-0.6
1,103,173	+				+0.0
1,103,173	+				+0.4
1,103,173	+				-0.2
1,103,173	+				+0.2
1,103,173	+				+0.7
1,103,173	+				-0.2
1,103,173	+				+0.8
1,103,173	+				+1.1
1,103,174	-				-0.2
1,103,174	-				-0.4
1,103,174	-				-0.2
1,103,174	-				+0.0
1,103,174	-				+0.3
1,103,174	-				+0.4
1,103,174	-				-0.9
1,103,174	-				+0.0
1,103,174	-				-1.7
1,103,174	-				+0.2
1,103,174	-				+0.2
1,103,174	-				-0.5
1,103,203	+				+0.2
1,103,204	-				-0.7
1,103,204	-				+0.2
1,103,234	+				+0.8
1,103,235	-				+1.1
1,103,235	-				+0.1
1,103,235	-				-0.3
1,103,241	+				+1.7
1,103,242	-				-0.2
1,103,242	-				+0.2
1,103,290	+				-0.2
1,103,334	+				+0.2
1,103,478	+				-0.5
1,103,478	+				+1.1
1,103,478	+				-0.0
1,103,478	+				+0.7
1,103,479	-				-0.1
1,103,479	-				-0.3
1,103,479	-				-2.3
1,103,485	+				+0.3
1,103,486	-				+1.0
1,103,486	-				-2.4
1,103,486	-				+0.9
1,103,537	+				+0.0
1,103,537	+				-0.4
1,103,568	+				-0.4
1,103,569	-				-0.2
1,103,569	-				-0.7
1,103,597	+				-0.3
1,103,598	-				+0.3
1,103,606	+				+0.2
1,103,606	+				+0.0
1,103,606	+				-0.2
1,103,607	-				-0.0
1,103,607	-				-0.2
1,103,612	+				-0.4
1,103,613	-				+0.3
1,103,624	+				+0.6
1,103,624	+				-0.6
1,103,625	-				+0.8
1,103,625	-				+0.2
1,103,625	-				+0.1
1,103,625	-				+0.1
1,103,640	+				+0.7
1,103,640	+				+0.3
1,103,641	-				-0.3
1,103,641	-				+0.1
1,103,650	+				-2.3
1,103,651	-				-0.1
1,103,651	-				-0.0
1,103,651	-				-0.7
1,103,840	+				+0.3
1,103,893	-				-0.2
1,103,939	+				+0.0
1,103,939	+				+1.4
1,103,939	+				+0.8
1,103,939	+				+0.2
1,103,980	+				+0.7
1,103,981	-				-0.0
1,103,982	+				-0.2
1,103,982	+				+0.2
1,103,983	-				+0.2
1,103,992	+				+0.0
1,103,993	-				+0.9
1,104,156	+				-0.1
1,104,156	+				-0.0
1,104,156	+				+0.0
1,104,335	+		GFF4187	0.41	-0.7
1,104,336	+		GFF4187	0.42	+0.0
1,104,336	+		GFF4187	0.42	-0.5
1,104,336	+		GFF4187	0.42	-0.3
1,104,336	+		GFF4187	0.42	-0.5
1,104,336	+		GFF4187	0.42	+0.7
1,104,336	+		GFF4187	0.42	+0.4
1,104,336	+		GFF4187	0.42	-0.2
1,104,336	+		GFF4187	0.42	+0.1
1,104,336	+		GFF4187	0.42	-1.2
1,104,336	+		GFF4187	0.42	-1.7
1,104,337	-		GFF4187	0.42	-0.3
1,104,337	-		GFF4187	0.42	-0.4
1,104,337	-		GFF4187	0.42	+0.1
1,104,337	-		GFF4187	0.42	+1.1
1,104,337	-		GFF4187	0.42	-0.4
1,104,337	-		GFF4187	0.42	+0.2
1,104,337	-		GFF4187	0.42	-0.2
1,104,337	-		GFF4187	0.42	-0.2
1,104,337	-		GFF4187	0.42	+0.2
1,104,337	-		GFF4187	0.42	-0.0
1,104,337	-		GFF4187	0.42	+0.0
1,104,337	-		GFF4187	0.42	+0.1
1,104,337	-		GFF4187	0.42	+0.1
1,104,337	-		GFF4187	0.42	-0.0
1,104,337	-		GFF4187	0.42	-0.2
1,104,337	-		GFF4187	0.42	-0.6
1,104,337	-		GFF4187	0.42	-0.8
1,104,385	+		GFF4187	0.50	-0.2
1,104,385	+		GFF4187	0.50	-0.6
1,104,385	+		GFF4187	0.50	+0.3
1,104,385	+		GFF4187	0.50	+0.8
1,104,385	+		GFF4187	0.50	+0.2
1,104,385	+		GFF4187	0.50	+0.9
1,104,385	+		GFF4187	0.50	-1.6
1,104,386	-		GFF4187	0.51	-0.3
1,104,386	-		GFF4187	0.51	+0.8
1,104,386	-		GFF4187	0.51	-0.5
1,105,020	+		GFF4188	0.21	+0.2
1,105,020	+		GFF4188	0.21	-0.1
1,105,020	+		GFF4188	0.21	+2.0
1,105,020	+		GFF4188	0.21	+0.3
1,105,020	+		GFF4188	0.21	+2.4
1,105,021	-		GFF4188	0.21	-0.5
1,105,021	-		GFF4188	0.21	-0.6
1,105,021	-		GFF4188	0.21	+0.4
1,105,139	+		GFF4188	0.34	-0.3
1,105,140	+		GFF4188	0.34	+0.2
1,105,140	+		GFF4188	0.34	+0.9
1,105,140	+		GFF4188	0.34	+1.3
1,105,140	+		GFF4188	0.34	-0.4
1,105,140	+		GFF4188	0.34	-0.2
1,105,140	+		GFF4188	0.34	+0.7
1,105,140	+		GFF4188	0.34	-0.9
1,105,141	-		GFF4188	0.34	+0.6
1,105,141	-		GFF4188	0.34	-0.4
1,105,141	-		GFF4188	0.34	+1.4
1,105,141	-		GFF4188	0.34	-0.3
1,105,141	-		GFF4188	0.34	+0.6
1,105,143	+		GFF4188	0.35	-0.3
1,105,143	+		GFF4188	0.35	+1.4
1,105,143	+		GFF4188	0.35	-0.9
1,105,144	-		GFF4188	0.35	+0.2
1,105,144	-		GFF4188	0.35	+0.2
1,105,144	-		GFF4188	0.35	-0.9
1,105,208	-		GFF4188	0.42	-0.0
1,105,338	+		GFF4188	0.56	-1.6
1,105,338	+		GFF4188	0.56	-0.6
1,105,338	+		GFF4188	0.56	+0.8
1,105,338	+		GFF4188	0.56	+0.7
1,105,338	+		GFF4188	0.56	+0.6
1,105,339	-		GFF4188	0.56	-0.2
1,105,339	-		GFF4188	0.56	-0.3
1,105,392	+		GFF4188	0.62	-0.7
1,105,392	+		GFF4188	0.62	-0.2
1,105,392	+		GFF4188	0.62	-0.1
1,105,393	-		GFF4188	0.62	-0.5
1,105,393	-		GFF4188	0.62	+0.4
1,105,393	-		GFF4188	0.62	-0.2
1,105,393	-		GFF4188	0.62	+0.6
1,105,393	-		GFF4188	0.62	+0.1
1,105,449	+		GFF4188	0.68	-0.0
1,105,525	-		GFF4188	0.76	+0.5
1,105,525	-		GFF4188	0.76	-0.4
1,105,638	+		GFF4188	0.89	-0.1
1,105,638	+		GFF4188	0.89	-0.8
1,105,638	+		GFF4188	0.89	+0.2
1,105,639	-		GFF4188	0.89	-1.5