Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4155

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
1,070,658	+				+0.5
1,070,763	+		GFF4154	0.11	+0.0
1,070,845	-		GFF4154	0.20	+0.8
1,070,850	+		GFF4154	0.21	-0.4
1,070,850	+		GFF4154	0.21	+0.4
1,070,850	+		GFF4154	0.21	-0.4
1,070,850	+		GFF4154	0.21	+0.6
1,070,850	+		GFF4154	0.21	+0.2
1,070,850	+		GFF4154	0.21	+0.1
1,070,850	+		GFF4154	0.21	-0.5
1,070,850	+		GFF4154	0.21	+0.0
1,070,850	+		GFF4154	0.21	+0.1
1,070,850	+		GFF4154	0.21	-0.9
1,070,850	+		GFF4154	0.21	-0.3
1,070,850	+		GFF4154	0.21	+0.1
1,070,850	+		GFF4154	0.21	+0.2
1,070,850	+		GFF4154	0.21	-0.2
1,070,850	+		GFF4154	0.21	+0.4
1,070,850	+		GFF4154	0.21	+1.3
1,070,850	+		GFF4154	0.21	+0.9
1,070,851	-		GFF4154	0.21	-1.3
1,070,851	-		GFF4154	0.21	-0.2
1,070,851	-		GFF4154	0.21	-1.1
1,070,851	-		GFF4154	0.21	-0.8
1,070,851	-		GFF4154	0.21	+0.1
1,070,851	-		GFF4154	0.21	-0.2
1,070,851	-		GFF4154	0.21	-0.5
1,070,851	-		GFF4154	0.21	-0.4
1,070,851	-		GFF4154	0.21	-0.3
1,070,851	-		GFF4154	0.21	-0.5
1,070,851	-		GFF4154	0.21	+0.4
1,070,851	-		GFF4154	0.21	-0.2
1,070,851	-		GFF4154	0.21	+0.2
1,070,851	-		GFF4154	0.21	+0.2
1,070,852	+		GFF4154	0.21	-0.4
1,070,852	+		GFF4154	0.21	-0.2
1,070,853	-		GFF4154	0.21	-0.5
1,070,881	+		GFF4154	0.24	+0.6
1,070,881	+		GFF4154	0.24	+0.1
1,070,881	+		GFF4154	0.24	+0.8
1,070,882	-		GFF4154	0.24	+0.4
1,070,882	-		GFF4154	0.24	-0.4
1,071,048	+		GFF4154	0.43	-0.3
1,071,048	+		GFF4154	0.43	-0.2
1,071,049	-		GFF4154	0.44	-0.4
1,071,171	+		GFF4154	0.58	+0.6
1,071,171	+		GFF4154	0.58	-0.5
1,071,171	+		GFF4154	0.58	+0.1
1,071,172	-		GFF4154	0.58	-0.3
1,071,172	-		GFF4154	0.58	+0.9
1,071,285	+		GFF4154	0.71	-0.2
1,071,285	+		GFF4154	0.71	+0.0
1,071,285	+		GFF4154	0.71	+0.2
1,071,285	+		GFF4154	0.71	-0.5
1,071,285	+		GFF4154	0.71	-0.5
1,071,285	+		GFF4154	0.71	-0.6
1,071,460	+				-0.2
1,071,612	+				-0.3
1,071,612	+				-1.7
1,071,612	+				+1.0
1,071,612	+				+0.6
1,071,612	+				+1.2
1,071,612	+				+0.2
1,071,612	+				+0.7
1,071,613	-				-0.4
1,071,613	-				-0.3
1,071,613	-				+1.0
1,071,854	-		GFF4155	0.11	-0.6
1,071,928	+		GFF4155	0.15	+0.6
1,071,928	+		GFF4155	0.15	-0.3
1,071,928	+		GFF4155	0.15	+0.1
1,071,970	-		GFF4155	0.17	-0.4
1,072,157	-		GFF4155	0.26	+0.2
1,072,237	+		GFF4155	0.30	+1.1
1,072,237	+		GFF4155	0.30	-0.2
1,072,237	+		GFF4155	0.30	-0.6
1,072,238	-		GFF4155	0.30	-0.2
1,072,238	-		GFF4155	0.30	-0.2
1,072,238	-		GFF4155	0.30	-0.2
1,072,238	-		GFF4155	0.30	-0.6
1,072,345	+		GFF4155	0.35	-1.2
1,072,346	-		GFF4155	0.35	-0.1
1,072,346	-		GFF4155	0.35	+0.3
1,072,405	+		GFF4155	0.38	-0.4
1,072,405	+		GFF4155	0.38	+0.1
1,072,406	-		GFF4155	0.38	+0.3
1,072,406	-		GFF4155	0.38	+0.4
1,072,406	-		GFF4155	0.38	-0.2
1,072,406	-		GFF4155	0.38	-0.4
1,072,519	+		GFF4155	0.44	+0.0
1,072,520	-		GFF4155	0.44	+0.7
1,072,645	+		GFF4155	0.50	-0.2
1,072,646	-		GFF4155	0.50	-0.3
1,072,741	+		GFF4155	0.54	-0.4
1,072,741	+		GFF4155	0.54	+0.6
1,073,083	+		GFF4155	0.71	+0.1
1,073,288	+		GFF4155	0.81	-0.4
1,073,289	-		GFF4155	0.81	-0.6
1,073,538	+				+0.2
1,073,538	+				+0.1
1,073,648	-				-0.5
1,073,697	+				-1.2
1,073,740	+				+0.4
1,073,740	+				-0.1
1,073,741	-				-0.2
1,073,741	-				-0.0
1,073,741	-				+0.6
1,073,786	+		GFF4156	0.20	-0.4
1,073,787	-		GFF4156	0.20	-1.0
1,073,803	-		GFF4156	0.28	-0.0
1,073,889	+		GFF4156	0.69	-0.5
1,073,889	+		GFF4156	0.69	-0.2
1,073,889	+		GFF4156	0.69	-0.1
1,073,889	+		GFF4156	0.69	-0.2
1,073,889	+		GFF4156	0.69	-0.6
1,073,890	-		GFF4156	0.70	-0.2
1,073,890	-		GFF4156	0.70	+0.3
1,073,890	-		GFF4156	0.70	-0.5
1,073,890	-		GFF4156	0.70	+0.1
1,073,890	-		GFF4156	0.70	-0.3
1,073,890	-		GFF4156	0.70	-0.9
1,073,890	-		GFF4156	0.70	-1.0
1,073,890	-		GFF4156	0.70	+0.5
1,073,952	-				+1.8
1,074,181	+				+1.4
1,074,181	+				-0.1
1,074,181	+				-0.1
1,074,181	+				+0.8
1,074,181	+				+0.0
1,074,181	+				+0.7
1,074,181	+				-0.7
1,074,182	-				+0.4
1,074,187	+				-0.3
1,074,188	-				-0.3
1,074,255	+				-0.2
1,074,256	-				-0.1
1,074,256	-				-0.3
1,074,256	-				+0.4
1,074,299	-				+0.3