Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3920 and GFF3921 are separated by 63 nucleotides GFF3921 and GFF3922 overlap by 8 nucleotides GFF3922 and GFF3923 are separated by 126 nucleotides
GFF3920 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 833,155 to 835,548
GFF3920
GFF3921 - FIG152265: Sodium:solute symporter associated protein, at 835,612 to 835,887
GFF3921
GFF3922 - Acetate permease ActP (cation/acetate symporter), at 835,880 to 837,943
GFF3922
GFF3923 - Permeases of the major facilitator superfamily, at 838,070 to 839,752
GFF3923
Position (kb) 835
836
837
838 Strain fitness (log2 ratio) -2
-1
0
1 at 834.955 kb on + strand, within GFF3920 at 835.414 kb on + strand at 835.414 kb on + strand at 835.414 kb on + strand at 835.414 kb on + strand at 835.415 kb on - strand at 835.572 kb on - strand at 835.572 kb on - strand at 835.572 kb on - strand at 835.572 kb on - strand at 835.575 kb on + strand at 835.575 kb on + strand at 835.575 kb on + strand at 835.575 kb on + strand at 835.816 kb on + strand, within GFF3921 at 835.816 kb on + strand, within GFF3921 at 835.817 kb on - strand, within GFF3921 at 835.898 kb on + strand at 835.899 kb on - strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.941 kb on - strand at 835.941 kb on - strand at 835.941 kb on - strand at 835.941 kb on - strand at 836.048 kb on + strand at 836.048 kb on + strand at 836.066 kb on + strand at 836.067 kb on - strand at 836.067 kb on - strand at 836.093 kb on + strand, within GFF3922 at 836.093 kb on + strand, within GFF3922 at 836.093 kb on + strand, within GFF3922 at 836.093 kb on + strand, within GFF3922 at 836.093 kb on + strand, within GFF3922 at 836.094 kb on - strand, within GFF3922 at 836.094 kb on - strand, within GFF3922 at 836.096 kb on + strand, within GFF3922 at 836.096 kb on + strand, within GFF3922 at 836.096 kb on + strand, within GFF3922 at 836.096 kb on + strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.126 kb on + strand, within GFF3922 at 836.126 kb on + strand, within GFF3922 at 836.196 kb on - strand, within GFF3922 at 836.196 kb on - strand, within GFF3922 at 836.196 kb on - strand, within GFF3922 at 836.243 kb on + strand, within GFF3922 at 836.243 kb on + strand, within GFF3922 at 836.243 kb on + strand, within GFF3922 at 836.243 kb on + strand, within GFF3922 at 836.244 kb on - strand, within GFF3922 at 836.318 kb on + strand, within GFF3922 at 836.319 kb on - strand, within GFF3922 at 836.333 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.409 kb on - strand, within GFF3922 at 836.409 kb on - strand, within GFF3922 at 836.426 kb on + strand, within GFF3922 at 836.427 kb on - strand, within GFF3922 at 836.427 kb on - strand, within GFF3922 at 836.561 kb on + strand, within GFF3922 at 836.561 kb on + strand, within GFF3922 at 836.561 kb on + strand, within GFF3922 at 836.562 kb on - strand, within GFF3922 at 836.609 kb on + strand, within GFF3922 at 836.646 kb on - strand, within GFF3922 at 837.116 kb on + strand, within GFF3922 at 837.116 kb on + strand, within GFF3922 at 837.116 kb on + strand, within GFF3922 at 837.117 kb on - strand, within GFF3922 at 837.117 kb on - strand, within GFF3922 at 837.117 kb on - strand, within GFF3922 at 837.185 kb on + strand, within GFF3922 at 837.186 kb on - strand, within GFF3922 at 837.186 kb on - strand, within GFF3922 at 837.221 kb on + strand, within GFF3922 at 837.221 kb on + strand, within GFF3922 at 837.222 kb on - strand, within GFF3922 at 837.222 kb on - strand, within GFF3922 at 837.222 kb on - strand, within GFF3922 at 837.413 kb on + strand, within GFF3922 at 837.413 kb on + strand, within GFF3922 at 837.413 kb on + strand, within GFF3922 at 837.413 kb on + strand, within GFF3922 at 837.414 kb on - strand, within GFF3922 at 837.414 kb on - strand, within GFF3922 at 837.414 kb on - strand, within GFF3922 at 837.515 kb on + strand, within GFF3922 at 837.515 kb on + strand, within GFF3922 at 837.515 kb on + strand, within GFF3922 at 837.515 kb on + strand, within GFF3922 at 837.516 kb on - strand, within GFF3922 at 837.516 kb on - strand, within GFF3922 at 837.516 kb on - strand, within GFF3922 at 837.516 kb on - strand, within GFF3922 at 837.516 kb on - strand, within GFF3922 at 837.773 kb on + strand at 837.773 kb on + strand at 837.773 kb on + strand at 837.773 kb on + strand at 837.773 kb on + strand at 837.773 kb on + strand at 837.773 kb on + strand at 837.773 kb on + strand at 837.774 kb on - strand at 837.774 kb on - strand at 837.774 kb on - strand at 837.950 kb on - strand at 837.950 kb on - strand at 838.014 kb on + strand at 838.014 kb on + strand at 838.015 kb on - strand at 838.048 kb on + strand at 838.049 kb on - strand at 838.049 kb on - strand at 838.053 kb on + strand at 838.054 kb on - strand at 838.054 kb on - strand at 838.054 kb on - strand at 838.054 kb on - strand at 838.143 kb on + strand at 838.144 kb on - strand at 838.163 kb on + strand at 838.163 kb on + strand at 838.164 kb on - strand at 838.172 kb on + strand at 838.172 kb on + strand at 838.173 kb on - strand at 838.173 kb on - strand at 838.178 kb on + strand at 838.178 kb on + strand at 838.179 kb on - strand at 838.241 kb on + strand, within GFF3923 at 838.241 kb on + strand, within GFF3923 at 838.242 kb on - strand, within GFF3923 at 838.337 kb on + strand, within GFF3923 at 838.338 kb on - strand, within GFF3923 at 838.338 kb on - strand, within GFF3923 at 838.338 kb on - strand, within GFF3923 at 838.403 kb on + strand, within GFF3923 at 838.403 kb on + strand, within GFF3923 at 838.403 kb on + strand, within GFF3923 at 838.403 kb on + strand, within GFF3923 at 838.403 kb on + strand, within GFF3923 at 838.404 kb on - strand, within GFF3923 at 838.404 kb on - strand, within GFF3923 at 838.482 kb on - strand, within GFF3923 at 838.499 kb on + strand, within GFF3923 at 838.499 kb on + strand, within GFF3923 at 838.499 kb on + strand, within GFF3923 at 838.499 kb on + strand, within GFF3923 at 838.499 kb on + strand, within GFF3923 at 838.499 kb on + strand, within GFF3923 at 838.500 kb on - strand, within GFF3923 at 838.500 kb on - strand, within GFF3923 at 838.500 kb on - strand, within GFF3923 at 838.500 kb on - strand, within GFF3923 at 838.500 kb on - strand, within GFF3923 at 838.500 kb on - strand, within GFF3923 at 838.538 kb on + strand, within GFF3923 at 838.539 kb on - strand, within GFF3923 at 838.857 kb on - strand, within GFF3923 at 838.857 kb on - strand, within GFF3923 at 838.872 kb on - strand, within GFF3923
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 834,955 + GFF3920 0.75 +0.7 835,414 + -0.6 835,414 + +0.3 835,414 + +0.8 835,414 + -0.0 835,415 - +1.1 835,572 - -0.0 835,572 - -0.9 835,572 - +0.1 835,572 - +0.5 835,575 + -1.2 835,575 + -0.7 835,575 + -0.9 835,575 + +0.2 835,816 + GFF3921 0.74 -0.6 835,816 + GFF3921 0.74 -1.5 835,817 - GFF3921 0.74 -1.2 835,898 + -1.2 835,899 - -0.8 835,940 + -0.6 835,940 + -1.1 835,940 + -0.9 835,940 + -0.7 835,940 + -1.1 835,940 + -1.1 835,941 - -1.5 835,941 - -0.3 835,941 - -1.9 835,941 - -1.0 836,048 + -1.2 836,048 + -0.8 836,066 + -1.3 836,067 - -0.7 836,067 - -0.3 836,093 + GFF3922 0.10 -1.0 836,093 + GFF3922 0.10 +0.1 836,093 + GFF3922 0.10 -2.1 836,093 + GFF3922 0.10 +0.4 836,093 + GFF3922 0.10 -1.1 836,094 - GFF3922 0.10 -1.9 836,094 - GFF3922 0.10 -2.0 836,096 + GFF3922 0.10 -1.0 836,096 + GFF3922 0.10 -1.9 836,096 + GFF3922 0.10 -0.8 836,096 + GFF3922 0.10 -0.9 836,097 - GFF3922 0.11 -1.6 836,097 - GFF3922 0.11 -1.2 836,097 - GFF3922 0.11 -2.2 836,097 - GFF3922 0.11 -1.4 836,097 - GFF3922 0.11 -0.5 836,097 - GFF3922 0.11 -1.4 836,097 - GFF3922 0.11 -1.4 836,126 + GFF3922 0.12 -1.7 836,126 + GFF3922 0.12 +0.3 836,196 - GFF3922 0.15 -0.2 836,196 - GFF3922 0.15 -0.9 836,196 - GFF3922 0.15 -0.9 836,243 + GFF3922 0.18 -0.9 836,243 + GFF3922 0.18 -0.9 836,243 + GFF3922 0.18 -1.4 836,243 + GFF3922 0.18 -1.5 836,244 - GFF3922 0.18 -1.2 836,318 + GFF3922 0.21 -0.4 836,319 - GFF3922 0.21 -0.5 836,333 + GFF3922 0.22 +0.0 836,408 + GFF3922 0.26 +0.5 836,408 + GFF3922 0.26 +0.0 836,408 + GFF3922 0.26 -0.9 836,408 + GFF3922 0.26 -0.2 836,408 + GFF3922 0.26 -0.4 836,409 - GFF3922 0.26 +0.4 836,409 - GFF3922 0.26 -1.2 836,426 + GFF3922 0.26 -0.2 836,427 - GFF3922 0.27 -0.5 836,427 - GFF3922 0.27 -0.8 836,561 + GFF3922 0.33 -1.6 836,561 + GFF3922 0.33 +0.1 836,561 + GFF3922 0.33 -0.9 836,562 - GFF3922 0.33 -2.2 836,609 + GFF3922 0.35 -1.5 836,646 - GFF3922 0.37 -2.0 837,116 + GFF3922 0.60 -2.4 837,116 + GFF3922 0.60 -0.9 837,116 + GFF3922 0.60 -1.7 837,117 - GFF3922 0.60 -0.9 837,117 - GFF3922 0.60 -0.4 837,117 - GFF3922 0.60 -1.7 837,185 + GFF3922 0.63 -1.5 837,186 - GFF3922 0.63 -1.7 837,186 - GFF3922 0.63 +0.2 837,221 + GFF3922 0.65 -0.2 837,221 + GFF3922 0.65 -1.1 837,222 - GFF3922 0.65 -1.3 837,222 - GFF3922 0.65 -0.7 837,222 - GFF3922 0.65 -1.3 837,413 + GFF3922 0.74 -1.7 837,413 + GFF3922 0.74 -0.5 837,413 + GFF3922 0.74 -0.8 837,413 + GFF3922 0.74 +0.1 837,414 - GFF3922 0.74 -0.9 837,414 - GFF3922 0.74 -0.8 837,414 - GFF3922 0.74 -1.0 837,515 + GFF3922 0.79 -1.4 837,515 + GFF3922 0.79 -2.7 837,515 + GFF3922 0.79 -1.7 837,515 + GFF3922 0.79 -1.5 837,516 - GFF3922 0.79 -1.1 837,516 - GFF3922 0.79 -1.8 837,516 - GFF3922 0.79 -1.4 837,516 - GFF3922 0.79 -0.8 837,516 - GFF3922 0.79 -1.1 837,773 + -0.3 837,773 + -0.6 837,773 + +0.5 837,773 + +0.3 837,773 + -0.9 837,773 + -0.6 837,773 + -1.7 837,773 + -1.6 837,774 - -0.5 837,774 - -1.2 837,774 - -0.4 837,950 - -0.1 837,950 - -0.9 838,014 + +0.1 838,014 + +0.0 838,015 - -0.7 838,048 + -0.5 838,049 - -1.0 838,049 - -0.5 838,053 + +0.1 838,054 - -0.9 838,054 - -0.3 838,054 - -0.6 838,054 - -0.5 838,143 + -0.7 838,144 - +0.9 838,163 + +0.3 838,163 + -0.9 838,164 - -1.0 838,172 + +0.1 838,172 + +0.1 838,173 - -0.7 838,173 - +0.3 838,178 + -1.2 838,178 + -0.3 838,179 - +0.3 838,241 + GFF3923 0.10 -0.6 838,241 + GFF3923 0.10 -0.4 838,242 - GFF3923 0.10 +0.1 838,337 + GFF3923 0.16 -0.5 838,338 - GFF3923 0.16 -0.2 838,338 - GFF3923 0.16 +0.4 838,338 - GFF3923 0.16 -0.6 838,403 + GFF3923 0.20 -1.1 838,403 + GFF3923 0.20 +0.0 838,403 + GFF3923 0.20 -0.0 838,403 + GFF3923 0.20 +0.3 838,403 + GFF3923 0.20 -0.7 838,404 - GFF3923 0.20 -0.7 838,404 - GFF3923 0.20 -1.3 838,482 - GFF3923 0.24 -1.1 838,499 + GFF3923 0.25 -0.7 838,499 + GFF3923 0.25 -0.8 838,499 + GFF3923 0.25 -0.4 838,499 + GFF3923 0.25 -0.3 838,499 + GFF3923 0.25 +0.4 838,499 + GFF3923 0.25 +0.4 838,500 - GFF3923 0.26 -1.6 838,500 - GFF3923 0.26 +0.0 838,500 - GFF3923 0.26 +0.3 838,500 - GFF3923 0.26 +1.0 838,500 - GFF3923 0.26 -1.5 838,500 - GFF3923 0.26 +0.4 838,538 + GFF3923 0.28 +0.4 838,539 - GFF3923 0.28 -0.3 838,857 - GFF3923 0.47 -0.9 838,857 - GFF3923 0.47 +0.8 838,872 - GFF3923 0.48 -0.6
Or see this region's nucleotide sequence