Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3919 and GFF3920 are separated by 160 nucleotides GFF3920 and GFF3921 are separated by 63 nucleotides GFF3921 and GFF3922 overlap by 8 nucleotides
GFF3919 - FIG137360: hypothetical protein, at 832,173 to 832,994
GFF3919
GFF3920 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 833,155 to 835,548
GFF3920
GFF3921 - FIG152265: Sodium:solute symporter associated protein, at 835,612 to 835,887
GFF3921
GFF3922 - Acetate permease ActP (cation/acetate symporter), at 835,880 to 837,943
GFF3922
Position (kb) 833
834
835
836 Strain fitness (log2 ratio) -2
-1
0
1 at 832.177 kb on + strand at 832.177 kb on + strand at 832.327 kb on + strand, within GFF3919 at 832.465 kb on + strand, within GFF3919 at 833.008 kb on + strand at 833.008 kb on + strand at 833.008 kb on + strand at 833.008 kb on + strand at 833.008 kb on + strand at 833.009 kb on - strand at 833.009 kb on - strand at 833.037 kb on + strand at 833.062 kb on + strand at 833.062 kb on + strand at 833.062 kb on + strand at 833.062 kb on + strand at 833.062 kb on + strand at 833.062 kb on + strand at 833.062 kb on + strand at 833.063 kb on - strand at 833.063 kb on - strand at 833.142 kb on + strand at 833.143 kb on - strand at 833.143 kb on - strand at 833.657 kb on - strand, within GFF3920 at 833.677 kb on + strand, within GFF3920 at 833.827 kb on + strand, within GFF3920 at 833.878 kb on + strand, within GFF3920 at 833.878 kb on + strand, within GFF3920 at 833.879 kb on - strand, within GFF3920 at 834.076 kb on + strand, within GFF3920 at 834.101 kb on - strand, within GFF3920 at 834.154 kb on + strand, within GFF3920 at 834.154 kb on + strand, within GFF3920 at 834.155 kb on - strand, within GFF3920 at 834.155 kb on - strand, within GFF3920 at 834.155 kb on - strand, within GFF3920 at 834.155 kb on - strand, within GFF3920 at 834.217 kb on + strand, within GFF3920 at 834.218 kb on - strand, within GFF3920 at 834.218 kb on - strand, within GFF3920 at 834.218 kb on - strand, within GFF3920 at 834.556 kb on + strand, within GFF3920 at 834.556 kb on + strand, within GFF3920 at 834.556 kb on + strand, within GFF3920 at 834.557 kb on - strand, within GFF3920 at 834.832 kb on + strand, within GFF3920 at 834.833 kb on - strand, within GFF3920 at 834.833 kb on - strand, within GFF3920 at 834.955 kb on + strand, within GFF3920 at 835.414 kb on + strand at 835.414 kb on + strand at 835.414 kb on + strand at 835.414 kb on + strand at 835.415 kb on - strand at 835.572 kb on - strand at 835.572 kb on - strand at 835.572 kb on - strand at 835.572 kb on - strand at 835.575 kb on + strand at 835.575 kb on + strand at 835.575 kb on + strand at 835.575 kb on + strand at 835.816 kb on + strand, within GFF3921 at 835.816 kb on + strand, within GFF3921 at 835.817 kb on - strand, within GFF3921 at 835.898 kb on + strand at 835.899 kb on - strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.940 kb on + strand at 835.941 kb on - strand at 835.941 kb on - strand at 835.941 kb on - strand at 835.941 kb on - strand at 836.048 kb on + strand at 836.048 kb on + strand at 836.066 kb on + strand at 836.067 kb on - strand at 836.067 kb on - strand at 836.093 kb on + strand, within GFF3922 at 836.093 kb on + strand, within GFF3922 at 836.093 kb on + strand, within GFF3922 at 836.093 kb on + strand, within GFF3922 at 836.093 kb on + strand, within GFF3922 at 836.094 kb on - strand, within GFF3922 at 836.094 kb on - strand, within GFF3922 at 836.096 kb on + strand, within GFF3922 at 836.096 kb on + strand, within GFF3922 at 836.096 kb on + strand, within GFF3922 at 836.096 kb on + strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.097 kb on - strand, within GFF3922 at 836.126 kb on + strand, within GFF3922 at 836.126 kb on + strand, within GFF3922 at 836.196 kb on - strand, within GFF3922 at 836.196 kb on - strand, within GFF3922 at 836.196 kb on - strand, within GFF3922 at 836.243 kb on + strand, within GFF3922 at 836.243 kb on + strand, within GFF3922 at 836.243 kb on + strand, within GFF3922 at 836.243 kb on + strand, within GFF3922 at 836.244 kb on - strand, within GFF3922 at 836.318 kb on + strand, within GFF3922 at 836.319 kb on - strand, within GFF3922 at 836.333 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.408 kb on + strand, within GFF3922 at 836.409 kb on - strand, within GFF3922 at 836.409 kb on - strand, within GFF3922 at 836.426 kb on + strand, within GFF3922 at 836.427 kb on - strand, within GFF3922 at 836.427 kb on - strand, within GFF3922
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 832,177 + -0.2 832,177 + -0.3 832,327 + GFF3919 0.19 -0.6 832,465 + GFF3919 0.36 -0.2 833,008 + +0.4 833,008 + +0.1 833,008 + +0.7 833,008 + +1.2 833,008 + +0.8 833,009 - +0.6 833,009 - +1.4 833,037 + -0.3 833,062 + +0.2 833,062 + -0.2 833,062 + -0.2 833,062 + +0.7 833,062 + -0.7 833,062 + -0.1 833,062 + -0.5 833,063 - +0.5 833,063 - -0.2 833,142 + +0.2 833,143 - +0.1 833,143 - -0.7 833,657 - GFF3920 0.21 -0.0 833,677 + GFF3920 0.22 +0.2 833,827 + GFF3920 0.28 -0.5 833,878 + GFF3920 0.30 -0.2 833,878 + GFF3920 0.30 -0.4 833,879 - GFF3920 0.30 -0.2 834,076 + GFF3920 0.38 -0.3 834,101 - GFF3920 0.40 +0.3 834,154 + GFF3920 0.42 +0.1 834,154 + GFF3920 0.42 +0.1 834,155 - GFF3920 0.42 +1.6 834,155 - GFF3920 0.42 -0.6 834,155 - GFF3920 0.42 +0.5 834,155 - GFF3920 0.42 -0.3 834,217 + GFF3920 0.44 +0.5 834,218 - GFF3920 0.44 -0.1 834,218 - GFF3920 0.44 +0.0 834,218 - GFF3920 0.44 +0.5 834,556 + GFF3920 0.59 +0.8 834,556 + GFF3920 0.59 +0.5 834,556 + GFF3920 0.59 +0.7 834,557 - GFF3920 0.59 -0.2 834,832 + GFF3920 0.70 +1.7 834,833 - GFF3920 0.70 -0.9 834,833 - GFF3920 0.70 +1.3 834,955 + GFF3920 0.75 +0.7 835,414 + -0.6 835,414 + +0.3 835,414 + +0.8 835,414 + -0.0 835,415 - +1.1 835,572 - -0.0 835,572 - -0.9 835,572 - +0.1 835,572 - +0.5 835,575 + -1.2 835,575 + -0.7 835,575 + -0.9 835,575 + +0.2 835,816 + GFF3921 0.74 -0.6 835,816 + GFF3921 0.74 -1.5 835,817 - GFF3921 0.74 -1.2 835,898 + -1.2 835,899 - -0.8 835,940 + -0.6 835,940 + -1.1 835,940 + -0.9 835,940 + -0.7 835,940 + -1.1 835,940 + -1.1 835,941 - -1.5 835,941 - -0.3 835,941 - -1.9 835,941 - -1.0 836,048 + -1.2 836,048 + -0.8 836,066 + -1.3 836,067 - -0.7 836,067 - -0.3 836,093 + GFF3922 0.10 -1.0 836,093 + GFF3922 0.10 +0.1 836,093 + GFF3922 0.10 -2.1 836,093 + GFF3922 0.10 +0.4 836,093 + GFF3922 0.10 -1.1 836,094 - GFF3922 0.10 -1.9 836,094 - GFF3922 0.10 -2.0 836,096 + GFF3922 0.10 -1.0 836,096 + GFF3922 0.10 -1.9 836,096 + GFF3922 0.10 -0.8 836,096 + GFF3922 0.10 -0.9 836,097 - GFF3922 0.11 -1.6 836,097 - GFF3922 0.11 -1.2 836,097 - GFF3922 0.11 -2.2 836,097 - GFF3922 0.11 -1.4 836,097 - GFF3922 0.11 -0.5 836,097 - GFF3922 0.11 -1.4 836,097 - GFF3922 0.11 -1.4 836,126 + GFF3922 0.12 -1.7 836,126 + GFF3922 0.12 +0.3 836,196 - GFF3922 0.15 -0.2 836,196 - GFF3922 0.15 -0.9 836,196 - GFF3922 0.15 -0.9 836,243 + GFF3922 0.18 -0.9 836,243 + GFF3922 0.18 -0.9 836,243 + GFF3922 0.18 -1.4 836,243 + GFF3922 0.18 -1.5 836,244 - GFF3922 0.18 -1.2 836,318 + GFF3922 0.21 -0.4 836,319 - GFF3922 0.21 -0.5 836,333 + GFF3922 0.22 +0.0 836,408 + GFF3922 0.26 +0.5 836,408 + GFF3922 0.26 +0.0 836,408 + GFF3922 0.26 -0.9 836,408 + GFF3922 0.26 -0.2 836,408 + GFF3922 0.26 -0.4 836,409 - GFF3922 0.26 +0.4 836,409 - GFF3922 0.26 -1.2 836,426 + GFF3922 0.26 -0.2 836,427 - GFF3922 0.27 -0.5 836,427 - GFF3922 0.27 -0.8
Or see this region's nucleotide sequence