Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3402

Experiment: Ying_sugar7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3401 and GFF3402 overlap by 4 nucleotidesGFF3402 and GFF3403 overlap by 8 nucleotides GFF3401 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 285,743 to 287,683 GFF3401 GFF3402 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 287,680 to 288,468 GFF3402 GFF3403 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 288,461 to 289,504 GFF3403 Position (kb) 287 288 289Strain fitness (log2 ratio) -1 0 1at 287.001 kb on + strand, within GFF3401at 287.001 kb on + strand, within GFF3401at 287.002 kb on - strand, within GFF3401at 287.002 kb on - strand, within GFF3401at 287.010 kb on + strand, within GFF3401at 287.700 kb on - strandat 288.287 kb on + strand, within GFF3402at 288.766 kb on - strand, within GFF3403at 288.820 kb on - strand, within GFF3403at 289.167 kb on + strand, within GFF3403

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1
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287,001 + GFF3401 0.65 +0.9
287,001 + GFF3401 0.65 +1.4
287,002 - GFF3401 0.65 -0.9
287,002 - GFF3401 0.65 +0.5
287,010 + GFF3401 0.65 -0.8
287,700 - +1.1
288,287 + GFF3402 0.77 +0.7
288,766 - GFF3403 0.29 +0.1
288,820 - GFF3403 0.34 +0.8
289,167 + GFF3403 0.68 +0.1

Or see this region's nucleotide sequence