Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3157 and GFF3158 are separated by 94 nucleotides GFF3158 and GFF3159 are separated by 126 nucleotides GFF3159 and GFF3160 overlap by 4 nucleotides
GFF3157 - Filamentation induced by cAMP protein Fic, at 34,071 to 35,615
GFF3157
GFF3158 - hypothetical protein, at 35,710 to 35,949
GFF3158
GFF3159 - hypothetical protein, at 36,076 to 36,699
GFF3159
GFF3160 - IncF plasmid conjugative transfer protein TraD, at 36,696 to 38,612
GFF3160
Position (kb) 36
37 Strain fitness (log2 ratio) -1
0
1
2 at 35.157 kb on + strand, within GFF3157 at 35.158 kb on - strand, within GFF3157 at 35.165 kb on + strand, within GFF3157 at 35.238 kb on + strand, within GFF3157 at 35.239 kb on - strand, within GFF3157 at 35.239 kb on - strand, within GFF3157 at 35.277 kb on + strand, within GFF3157 at 35.277 kb on + strand, within GFF3157 at 35.277 kb on + strand, within GFF3157 at 35.277 kb on + strand, within GFF3157 at 35.277 kb on + strand, within GFF3157 at 35.277 kb on + strand, within GFF3157 at 35.277 kb on + strand, within GFF3157 at 35.278 kb on - strand, within GFF3157 at 35.278 kb on - strand, within GFF3157 at 35.278 kb on - strand, within GFF3157 at 35.331 kb on + strand, within GFF3157 at 35.331 kb on + strand, within GFF3157 at 35.520 kb on + strand at 35.521 kb on - strand at 35.613 kb on + strand at 35.614 kb on - strand at 35.657 kb on - strand at 35.657 kb on - strand at 35.725 kb on - strand at 35.866 kb on + strand, within GFF3158 at 35.866 kb on + strand, within GFF3158 at 35.867 kb on - strand, within GFF3158 at 35.867 kb on - strand, within GFF3158 at 35.867 kb on - strand, within GFF3158 at 36.027 kb on - strand at 36.360 kb on - strand, within GFF3159 at 36.398 kb on + strand, within GFF3159 at 36.398 kb on + strand, within GFF3159 at 36.399 kb on - strand, within GFF3159 at 36.644 kb on + strand at 36.645 kb on - strand at 36.805 kb on + strand at 36.806 kb on - strand at 36.880 kb on + strand at 36.880 kb on + strand at 36.880 kb on + strand at 36.881 kb on - strand at 36.941 kb on + strand, within GFF3160 at 37.216 kb on + strand, within GFF3160 at 37.309 kb on + strand, within GFF3160 at 37.310 kb on - strand, within GFF3160 at 37.459 kb on + strand, within GFF3160 at 37.460 kb on - strand, within GFF3160 at 37.540 kb on + strand, within GFF3160 at 37.541 kb on - strand, within GFF3160 at 37.673 kb on - strand, within GFF3160 at 37.673 kb on - strand, within GFF3160
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 35,157 + GFF3157 0.70 -0.1 35,158 - GFF3157 0.70 -1.3 35,165 + GFF3157 0.71 +1.0 35,238 + GFF3157 0.76 +0.4 35,239 - GFF3157 0.76 -1.0 35,239 - GFF3157 0.76 +0.2 35,277 + GFF3157 0.78 +0.4 35,277 + GFF3157 0.78 +0.0 35,277 + GFF3157 0.78 +0.3 35,277 + GFF3157 0.78 -0.4 35,277 + GFF3157 0.78 +1.8 35,277 + GFF3157 0.78 +0.8 35,277 + GFF3157 0.78 -0.3 35,278 - GFF3157 0.78 +0.3 35,278 - GFF3157 0.78 +0.7 35,278 - GFF3157 0.78 +0.2 35,331 + GFF3157 0.82 -0.9 35,331 + GFF3157 0.82 -0.2 35,520 + -0.1 35,521 - +0.2 35,613 + -0.3 35,614 - +0.4 35,657 - -1.3 35,657 - -0.2 35,725 - +0.6 35,866 + GFF3158 0.65 -1.4 35,866 + GFF3158 0.65 -1.1 35,867 - GFF3158 0.65 +0.3 35,867 - GFF3158 0.65 -0.5 35,867 - GFF3158 0.65 +0.2 36,027 - +0.9 36,360 - GFF3159 0.46 -0.5 36,398 + GFF3159 0.52 -0.5 36,398 + GFF3159 0.52 -0.7 36,399 - GFF3159 0.52 +0.1 36,644 + +0.1 36,645 - -0.5 36,805 + -1.2 36,806 - +0.4 36,880 + -0.7 36,880 + -0.4 36,880 + -0.2 36,881 - +0.5 36,941 + GFF3160 0.13 +1.0 37,216 + GFF3160 0.27 -0.4 37,309 + GFF3160 0.32 +0.6 37,310 - GFF3160 0.32 +0.4 37,459 + GFF3160 0.40 +0.1 37,460 - GFF3160 0.40 +0.1 37,540 + GFF3160 0.44 +0.8 37,541 - GFF3160 0.44 +0.9 37,673 - GFF3160 0.51 -0.1 37,673 - GFF3160 0.51 -0.2
Or see this region's nucleotide sequence