Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2957 and GFF2958 are separated by 28 nucleotides GFF2958 and GFF2959 overlap by 8 nucleotides
GFF2957 - TRAP transporter solute receptor, unknown substrate 5, at 36,118 to 37,131
GFF2957
GFF2958 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 5, at 37,160 to 37,699
GFF2958
GFF2959 - TRAP-type C4-dicarboxylate transport system, large permease component, at 37,692 to 38,993
GFF2959
Position (kb) 37
38 Strain fitness (log2 ratio) -1
0
1
2 at 36.160 kb on + strand at 36.160 kb on + strand at 36.161 kb on - strand at 36.238 kb on + strand, within GFF2957 at 36.238 kb on + strand, within GFF2957 at 36.238 kb on + strand, within GFF2957 at 36.239 kb on - strand, within GFF2957 at 36.239 kb on - strand, within GFF2957 at 36.245 kb on - strand, within GFF2957 at 36.245 kb on - strand, within GFF2957 at 36.245 kb on - strand, within GFF2957 at 36.245 kb on - strand, within GFF2957 at 36.245 kb on - strand, within GFF2957 at 36.245 kb on - strand, within GFF2957 at 36.538 kb on + strand, within GFF2957 at 36.539 kb on - strand, within GFF2957 at 36.571 kb on + strand, within GFF2957 at 36.571 kb on + strand, within GFF2957 at 36.571 kb on + strand, within GFF2957 at 36.571 kb on + strand, within GFF2957 at 36.572 kb on - strand, within GFF2957 at 36.572 kb on - strand, within GFF2957 at 36.572 kb on - strand, within GFF2957 at 36.808 kb on + strand, within GFF2957 at 36.809 kb on - strand, within GFF2957 at 36.809 kb on - strand, within GFF2957 at 36.809 kb on - strand, within GFF2957 at 36.809 kb on - strand, within GFF2957 at 36.814 kb on + strand, within GFF2957 at 37.055 kb on - strand at 37.401 kb on - strand, within GFF2958 at 37.401 kb on - strand, within GFF2958 at 37.701 kb on + strand at 37.702 kb on - strand at 37.791 kb on + strand at 37.792 kb on - strand at 37.863 kb on + strand, within GFF2959 at 37.864 kb on - strand, within GFF2959 at 37.864 kb on - strand, within GFF2959 at 37.864 kb on - strand, within GFF2959 at 37.864 kb on - strand, within GFF2959 at 37.939 kb on - strand, within GFF2959 at 38.179 kb on - strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.265 kb on + strand, within GFF2959 at 38.266 kb on - strand, within GFF2959 at 38.266 kb on - strand, within GFF2959 at 38.403 kb on + strand, within GFF2959 at 38.404 kb on - strand, within GFF2959 at 38.556 kb on + strand, within GFF2959 at 38.556 kb on + strand, within GFF2959 at 38.556 kb on + strand, within GFF2959 at 38.557 kb on - strand, within GFF2959 at 38.557 kb on - strand, within GFF2959
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 36,160 + +0.3 36,160 + +1.0 36,161 - +0.3 36,238 + GFF2957 0.12 -0.1 36,238 + GFF2957 0.12 +0.3 36,238 + GFF2957 0.12 -0.1 36,239 - GFF2957 0.12 -1.5 36,239 - GFF2957 0.12 -0.1 36,245 - GFF2957 0.13 -0.1 36,245 - GFF2957 0.13 -0.8 36,245 - GFF2957 0.13 -0.3 36,245 - GFF2957 0.13 -0.1 36,245 - GFF2957 0.13 -0.0 36,245 - GFF2957 0.13 +1.0 36,538 + GFF2957 0.41 +0.2 36,539 - GFF2957 0.42 +0.1 36,571 + GFF2957 0.45 -0.3 36,571 + GFF2957 0.45 -0.4 36,571 + GFF2957 0.45 +0.2 36,571 + GFF2957 0.45 +0.6 36,572 - GFF2957 0.45 -0.0 36,572 - GFF2957 0.45 -0.1 36,572 - GFF2957 0.45 -0.0 36,808 + GFF2957 0.68 +0.1 36,809 - GFF2957 0.68 +0.4 36,809 - GFF2957 0.68 -0.3 36,809 - GFF2957 0.68 -0.2 36,809 - GFF2957 0.68 -0.7 36,814 + GFF2957 0.69 +0.2 37,055 - +1.4 37,401 - GFF2958 0.45 +0.0 37,401 - GFF2958 0.45 -0.7 37,701 + +1.1 37,702 - -0.6 37,791 + -0.2 37,792 - +1.6 37,863 + GFF2959 0.13 -0.1 37,864 - GFF2959 0.13 -0.1 37,864 - GFF2959 0.13 -0.7 37,864 - GFF2959 0.13 +2.2 37,864 - GFF2959 0.13 -0.9 37,939 - GFF2959 0.19 -0.1 38,179 - GFF2959 0.37 +0.4 38,265 + GFF2959 0.44 +1.1 38,265 + GFF2959 0.44 -0.2 38,265 + GFF2959 0.44 +0.1 38,265 + GFF2959 0.44 +0.4 38,265 + GFF2959 0.44 +0.2 38,266 - GFF2959 0.44 +0.6 38,266 - GFF2959 0.44 -0.3 38,403 + GFF2959 0.55 +1.2 38,404 - GFF2959 0.55 +1.0 38,556 + GFF2959 0.66 -0.8 38,556 + GFF2959 0.66 -0.2 38,556 + GFF2959 0.66 +1.2 38,557 - GFF2959 0.66 +0.2 38,557 - GFF2959 0.66 -0.7
Or see this region's nucleotide sequence