Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2750

Experiment: Ying_sugar7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2749 and GFF2750 overlap by 4 nucleotidesGFF2750 and GFF2751 are separated by 419 nucleotides GFF2749 - Probable oxalate/formate antiporter, at 345,118 to 346,395 GFF2749 GFF2750 - ProQ: influences osmotic activation of compatible solute ProP, at 346,392 to 346,979 GFF2750 GFF2751 - hypothetical protein, at 347,399 to 348,226 GFF2751 Position (kb) 346 347Strain fitness (log2 ratio) -2 -1 0 1at 345.398 kb on + strand, within GFF2749at 345.398 kb on + strand, within GFF2749at 345.398 kb on + strand, within GFF2749at 345.399 kb on - strand, within GFF2749at 345.399 kb on - strand, within GFF2749at 345.399 kb on - strand, within GFF2749at 345.449 kb on + strand, within GFF2749at 345.450 kb on - strand, within GFF2749at 345.450 kb on - strand, within GFF2749at 345.450 kb on - strand, within GFF2749at 345.450 kb on - strand, within GFF2749at 345.450 kb on - strand, within GFF2749at 345.648 kb on - strand, within GFF2749at 345.881 kb on + strand, within GFF2749at 345.881 kb on + strand, within GFF2749at 345.881 kb on + strand, within GFF2749at 345.881 kb on + strand, within GFF2749at 345.881 kb on + strand, within GFF2749at 345.881 kb on + strand, within GFF2749at 345.881 kb on + strand, within GFF2749at 345.881 kb on + strand, within GFF2749at 345.882 kb on + strand, within GFF2749at 345.882 kb on - strand, within GFF2749at 345.882 kb on - strand, within GFF2749at 345.882 kb on - strand, within GFF2749at 345.882 kb on - strand, within GFF2749at 345.882 kb on - strand, within GFF2749at 345.882 kb on - strand, within GFF2749at 345.950 kb on + strand, within GFF2749at 345.950 kb on + strand, within GFF2749at 345.951 kb on - strand, within GFF2749at 345.951 kb on - strand, within GFF2749at 345.951 kb on - strand, within GFF2749at 346.232 kb on + strand, within GFF2749at 346.232 kb on + strand, within GFF2749at 346.232 kb on + strand, within GFF2749at 346.232 kb on + strand, within GFF2749at 346.232 kb on + strand, within GFF2749at 346.233 kb on - strand, within GFF2749at 346.233 kb on - strand, within GFF2749at 346.233 kb on - strand, within GFF2749at 346.304 kb on + strandat 346.304 kb on + strandat 346.305 kb on - strandat 346.305 kb on - strandat 346.305 kb on - strandat 346.305 kb on - strandat 346.305 kb on - strandat 346.305 kb on - strandat 346.305 kb on - strandat 346.305 kb on - strandat 346.305 kb on - strandat 346.305 kb on - strandat 346.365 kb on - strandat 346.468 kb on + strand, within GFF2750at 346.468 kb on + strand, within GFF2750at 346.468 kb on + strand, within GFF2750at 346.468 kb on + strand, within GFF2750at 346.468 kb on + strand, within GFF2750at 346.468 kb on + strand, within GFF2750at 346.468 kb on + strand, within GFF2750at 346.468 kb on + strand, within GFF2750at 346.469 kb on - strand, within GFF2750at 346.469 kb on - strand, within GFF2750at 346.469 kb on - strand, within GFF2750at 346.469 kb on - strand, within GFF2750at 346.469 kb on - strand, within GFF2750at 346.469 kb on - strand, within GFF2750at 346.469 kb on - strand, within GFF2750at 346.469 kb on - strand, within GFF2750at 346.469 kb on - strand, within GFF2750at 346.469 kb on - strand, within GFF2750at 346.618 kb on + strand, within GFF2750at 346.618 kb on + strand, within GFF2750at 346.618 kb on + strand, within GFF2750at 346.619 kb on - strand, within GFF2750at 346.619 kb on - strand, within GFF2750at 346.619 kb on - strand, within GFF2750at 346.619 kb on - strand, within GFF2750at 346.619 kb on - strand, within GFF2750at 346.681 kb on - strand, within GFF2750at 346.906 kb on + strand, within GFF2750at 347.112 kb on - strandat 347.255 kb on + strandat 347.269 kb on + strandat 347.269 kb on + strandat 347.270 kb on - strandat 347.347 kb on + strandat 347.348 kb on - strandat 347.507 kb on + strand, within GFF2751

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1
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345,398 + GFF2749 0.22 +0.2
345,398 + GFF2749 0.22 +0.2
345,398 + GFF2749 0.22 +0.9
345,399 - GFF2749 0.22 +0.1
345,399 - GFF2749 0.22 +0.3
345,399 - GFF2749 0.22 -0.1
345,449 + GFF2749 0.26 +0.8
345,450 - GFF2749 0.26 +0.7
345,450 - GFF2749 0.26 +0.1
345,450 - GFF2749 0.26 -0.7
345,450 - GFF2749 0.26 +1.4
345,450 - GFF2749 0.26 -1.6
345,648 - GFF2749 0.41 +0.0
345,881 + GFF2749 0.60 +0.4
345,881 + GFF2749 0.60 +0.2
345,881 + GFF2749 0.60 -0.2
345,881 + GFF2749 0.60 -0.2
345,881 + GFF2749 0.60 -1.0
345,881 + GFF2749 0.60 +1.4
345,881 + GFF2749 0.60 -0.1
345,881 + GFF2749 0.60 +0.7
345,882 + GFF2749 0.60 -0.6
345,882 - GFF2749 0.60 -0.6
345,882 - GFF2749 0.60 +0.0
345,882 - GFF2749 0.60 -1.0
345,882 - GFF2749 0.60 +0.4
345,882 - GFF2749 0.60 +0.3
345,882 - GFF2749 0.60 +0.2
345,950 + GFF2749 0.65 -0.6
345,950 + GFF2749 0.65 +0.7
345,951 - GFF2749 0.65 -0.5
345,951 - GFF2749 0.65 +0.1
345,951 - GFF2749 0.65 -0.3
346,232 + GFF2749 0.87 +0.2
346,232 + GFF2749 0.87 +0.4
346,232 + GFF2749 0.87 +0.3
346,232 + GFF2749 0.87 -2.0
346,232 + GFF2749 0.87 +0.8
346,233 - GFF2749 0.87 -0.4
346,233 - GFF2749 0.87 -0.3
346,233 - GFF2749 0.87 -0.2
346,304 + -0.3
346,304 + +0.8
346,305 - -0.2
346,305 - +0.2
346,305 - +0.6
346,305 - +0.4
346,305 - -0.2
346,305 - +0.8
346,305 - -0.3
346,305 - +0.1
346,305 - -0.6
346,305 - -0.7
346,365 - +0.5
346,468 + GFF2750 0.13 +0.0
346,468 + GFF2750 0.13 +0.1
346,468 + GFF2750 0.13 +0.1
346,468 + GFF2750 0.13 +0.3
346,468 + GFF2750 0.13 +0.2
346,468 + GFF2750 0.13 -2.2
346,468 + GFF2750 0.13 +0.5
346,468 + GFF2750 0.13 +0.0
346,469 - GFF2750 0.13 -0.1
346,469 - GFF2750 0.13 +0.7
346,469 - GFF2750 0.13 +0.2
346,469 - GFF2750 0.13 +0.0
346,469 - GFF2750 0.13 -0.1
346,469 - GFF2750 0.13 -0.3
346,469 - GFF2750 0.13 +0.0
346,469 - GFF2750 0.13 -0.1
346,469 - GFF2750 0.13 -0.6
346,469 - GFF2750 0.13 +0.1
346,618 + GFF2750 0.38 -0.1
346,618 + GFF2750 0.38 +0.2
346,618 + GFF2750 0.38 +0.6
346,619 - GFF2750 0.39 +0.1
346,619 - GFF2750 0.39 +0.1
346,619 - GFF2750 0.39 +0.1
346,619 - GFF2750 0.39 -0.3
346,619 - GFF2750 0.39 -0.1
346,681 - GFF2750 0.49 +1.3
346,906 + GFF2750 0.87 -0.8
347,112 - -0.3
347,255 + +0.0
347,269 + -0.6
347,269 + -0.8
347,270 - -0.2
347,347 + -0.5
347,348 - +0.4
347,507 + GFF2751 0.13 -0.1

Or see this region's nucleotide sequence