Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2705 and GFF2706 are separated by 9 nucleotides GFF2706 and GFF2707 are separated by 13 nucleotides GFF2707 and GFF2708 are separated by 16 nucleotides
GFF2705 - hypothetical protein, at 296,856 to 297,209
GFF2705
GFF2706 - Transcriptional regulatory protein, at 297,219 to 298,142
GFF2706
GFF2707 - Putative decarboxylase, at 298,156 to 298,953
GFF2707
GFF2708 - Tricarboxylate transport protein TctC, at 298,970 to 299,938
GFF2708
Position (kb) 298
299 Strain fitness (log2 ratio) -2
-1
0
1 at 297.367 kb on - strand, within GFF2706 at 297.781 kb on + strand, within GFF2706 at 297.846 kb on + strand, within GFF2706 at 297.846 kb on + strand, within GFF2706 at 297.846 kb on + strand, within GFF2706 at 297.847 kb on - strand, within GFF2706 at 297.847 kb on - strand, within GFF2706 at 297.847 kb on - strand, within GFF2706 at 297.847 kb on - strand, within GFF2706 at 297.856 kb on + strand, within GFF2706 at 297.938 kb on - strand, within GFF2706 at 297.938 kb on - strand, within GFF2706 at 297.938 kb on - strand, within GFF2706 at 298.180 kb on + strand at 298.422 kb on - strand, within GFF2707 at 298.559 kb on + strand, within GFF2707 at 298.559 kb on + strand, within GFF2707 at 298.712 kb on + strand, within GFF2707 at 298.713 kb on - strand, within GFF2707 at 298.713 kb on - strand, within GFF2707 at 298.784 kb on + strand, within GFF2707 at 298.784 kb on + strand, within GFF2707 at 298.784 kb on + strand, within GFF2707 at 298.925 kb on + strand at 298.935 kb on - strand at 299.130 kb on + strand, within GFF2708 at 299.388 kb on + strand, within GFF2708 at 299.389 kb on - strand, within GFF2708 at 299.389 kb on - strand, within GFF2708 at 299.505 kb on + strand, within GFF2708 at 299.614 kb on - strand, within GFF2708
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 297,367 - GFF2706 0.16 -0.2 297,781 + GFF2706 0.61 -0.1 297,846 + GFF2706 0.68 -0.6 297,846 + GFF2706 0.68 +0.2 297,846 + GFF2706 0.68 +1.6 297,847 - GFF2706 0.68 -0.7 297,847 - GFF2706 0.68 -1.1 297,847 - GFF2706 0.68 -0.2 297,847 - GFF2706 0.68 -0.2 297,856 + GFF2706 0.69 -1.1 297,938 - GFF2706 0.78 -0.2 297,938 - GFF2706 0.78 +0.4 297,938 - GFF2706 0.78 -2.1 298,180 + +0.3 298,422 - GFF2707 0.33 +0.1 298,559 + GFF2707 0.51 -1.4 298,559 + GFF2707 0.51 -1.0 298,712 + GFF2707 0.70 -2.0 298,713 - GFF2707 0.70 +0.8 298,713 - GFF2707 0.70 +0.0 298,784 + GFF2707 0.79 -0.1 298,784 + GFF2707 0.79 +0.1 298,784 + GFF2707 0.79 -0.5 298,925 + -0.5 298,935 - -0.5 299,130 + GFF2708 0.17 -0.6 299,388 + GFF2708 0.43 -1.2 299,389 - GFF2708 0.43 -0.2 299,389 - GFF2708 0.43 -0.2 299,505 + GFF2708 0.55 -0.6 299,614 - GFF2708 0.66 -0.0
Or see this region's nucleotide sequence