Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2582 and GFF2583 are separated by 74 nucleotides GFF2583 and GFF2584 are separated by 25 nucleotides
GFF2582 - Ferric iron ABC transporter, iron-binding protein, at 175,923 to 177,257
GFF2582
GFF2583 - Ferric iron ABC transporter, permease protein, at 177,332 to 179,062
GFF2583
GFF2584 - SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3), at 179,088 to 180,179
GFF2584
Position (kb) 177
178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 176.341 kb on - strand, within GFF2582 at 176.400 kb on + strand, within GFF2582 at 176.400 kb on + strand, within GFF2582 at 176.628 kb on + strand, within GFF2582 at 176.628 kb on + strand, within GFF2582 at 176.629 kb on - strand, within GFF2582 at 176.629 kb on - strand, within GFF2582 at 176.656 kb on - strand, within GFF2582 at 176.742 kb on + strand, within GFF2582 at 176.742 kb on + strand, within GFF2582 at 176.742 kb on + strand, within GFF2582 at 176.743 kb on - strand, within GFF2582 at 176.845 kb on - strand, within GFF2582 at 177.207 kb on + strand at 177.208 kb on - strand at 177.355 kb on + strand at 177.473 kb on + strand at 177.474 kb on - strand at 177.627 kb on - strand, within GFF2583 at 177.839 kb on + strand, within GFF2583 at 177.840 kb on - strand, within GFF2583 at 178.073 kb on + strand, within GFF2583 at 178.115 kb on + strand, within GFF2583 at 178.194 kb on - strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.265 kb on + strand, within GFF2583 at 178.266 kb on - strand, within GFF2583 at 178.370 kb on + strand, within GFF2583 at 178.370 kb on + strand, within GFF2583 at 178.370 kb on + strand, within GFF2583 at 178.385 kb on + strand, within GFF2583 at 178.386 kb on - strand, within GFF2583 at 178.437 kb on - strand, within GFF2583 at 178.533 kb on - strand, within GFF2583 at 178.584 kb on - strand, within GFF2583 at 178.664 kb on + strand, within GFF2583 at 178.910 kb on + strand at 178.911 kb on - strand at 178.919 kb on + strand at 178.919 kb on + strand at 178.919 kb on + strand at 178.920 kb on - strand at 178.925 kb on + strand at 178.925 kb on + strand at 178.926 kb on - strand at 178.926 kb on - strand at 178.926 kb on - strand at 179.003 kb on + strand at 179.349 kb on + strand, within GFF2584 at 179.475 kb on + strand, within GFF2584
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 176,341 - GFF2582 0.31 +0.4 176,400 + GFF2582 0.36 +0.8 176,400 + GFF2582 0.36 -1.6 176,628 + GFF2582 0.53 +0.2 176,628 + GFF2582 0.53 +0.0 176,629 - GFF2582 0.53 -0.4 176,629 - GFF2582 0.53 +0.2 176,656 - GFF2582 0.55 -0.7 176,742 + GFF2582 0.61 -0.6 176,742 + GFF2582 0.61 +0.8 176,742 + GFF2582 0.61 +0.3 176,743 - GFF2582 0.61 -0.3 176,845 - GFF2582 0.69 -0.3 177,207 + -0.5 177,208 - -0.2 177,355 + -0.3 177,473 + -0.2 177,474 - +0.4 177,627 - GFF2583 0.17 -0.5 177,839 + GFF2583 0.29 +1.1 177,840 - GFF2583 0.29 +0.2 178,073 + GFF2583 0.43 +0.2 178,115 + GFF2583 0.45 -1.3 178,194 - GFF2583 0.50 +1.5 178,265 + GFF2583 0.54 -0.1 178,265 + GFF2583 0.54 -0.9 178,265 + GFF2583 0.54 -0.2 178,265 + GFF2583 0.54 -0.0 178,265 + GFF2583 0.54 -0.6 178,265 + GFF2583 0.54 -0.0 178,265 + GFF2583 0.54 -0.1 178,265 + GFF2583 0.54 -0.1 178,265 + GFF2583 0.54 -1.1 178,266 - GFF2583 0.54 -0.7 178,370 + GFF2583 0.60 -0.1 178,370 + GFF2583 0.60 -0.4 178,370 + GFF2583 0.60 -0.1 178,385 + GFF2583 0.61 -0.2 178,386 - GFF2583 0.61 -0.5 178,437 - GFF2583 0.64 -0.5 178,533 - GFF2583 0.69 -0.4 178,584 - GFF2583 0.72 -1.0 178,664 + GFF2583 0.77 -0.5 178,910 + -0.2 178,911 - -0.2 178,919 + -2.4 178,919 + -1.6 178,919 + -2.5 178,920 - -2.0 178,925 + -2.4 178,925 + -3.0 178,926 - -1.1 178,926 - -0.9 178,926 - +0.4 179,003 + -1.0 179,349 + GFF2584 0.24 -0.2 179,475 + GFF2584 0.35 -0.5
Or see this region's nucleotide sequence