Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2334

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
1,218,090	+		GFF2333	0.11	+0.9
1,218,090	+		GFF2333	0.11	+0.4
1,218,091	-		GFF2333	0.11	+0.1
1,218,219	+		GFF2333	0.30	+1.4
1,218,220	-		GFF2333	0.30	-0.6
1,218,220	-		GFF2333	0.30	+0.1
1,218,220	-		GFF2333	0.30	-0.5
1,218,220	-		GFF2333	0.30	+1.1
1,218,220	-		GFF2333	0.30	+0.4
1,218,546	-		GFF2333	0.80	+0.4
1,218,701	+				-0.1
1,218,701	+				-0.4
1,218,702	-				-0.4
1,218,702	-				+0.6
1,218,702	-				-1.2
1,218,702	-				-0.2
1,218,702	-				-1.2
1,218,702	-				+0.7
1,218,702	-				-1.4
1,218,793	+				-1.4
1,218,794	-				-0.0
1,218,881	+				-0.2
1,218,881	+				+0.8
1,218,916	+				-0.3
1,218,916	+				+0.4
1,218,953	-				+0.4
1,218,953	-				+0.2
1,218,977	+				+0.1
1,218,978	-				-0.5
1,219,084	+		GFF2334	0.25	-0.2
1,219,084	+		GFF2334	0.25	+0.0
1,219,095	-		GFF2334	0.30	+0.1
1,219,109	+		GFF2334	0.37	-0.4
1,219,148	+		GFF2334	0.57	-0.1
1,219,148	+		GFF2334	0.57	+0.0
1,219,148	+		GFF2334	0.57	+0.4
1,219,149	-		GFF2334	0.58	-0.2
1,219,149	-		GFF2334	0.58	-0.2
1,219,208	+		GFF2334	0.88	+0.2
1,219,209	-		GFF2334	0.89	-0.5
1,219,222	-				+0.9
1,219,244	+				+0.1
1,219,245	+				-0.4
1,219,245	+				-0.0
1,219,245	+				-0.1
1,219,246	-				+0.7
1,219,246	-				-1.8
1,219,246	-				-0.5
1,219,266	+				-0.1
1,219,266	+				+0.4
1,219,267	-				-0.1
1,219,340	+				+0.1
1,219,340	+				-1.6
1,219,340	+				-0.6
1,219,341	-				-0.6
1,219,341	-				-0.6
1,219,341	-				+0.7
1,219,341	-				-0.3
1,219,341	-				+0.4
1,219,351	+				+0.1
1,219,351	+				-0.1
1,219,351	+				-0.0
1,219,351	+				+0.5
1,219,352	-				-0.0
1,219,352	-				-0.6
1,219,352	-				-0.5
1,219,395	+				+0.4
1,219,395	+				+0.2
1,219,395	+				+0.3
1,219,395	+				+0.2
1,219,396	-				+0.5
1,219,396	-				-0.5
1,219,396	-				+0.4
1,219,435	-				+0.1
1,219,459	-				+0.1
1,219,494	+				+1.8
1,219,540	+				-0.5
1,219,540	+				+0.2
1,219,540	+				+0.4
1,219,540	+				+0.8
1,219,540	+				+0.7
1,219,541	-				-0.3
1,219,541	-				-1.0
1,219,541	-				+1.0
1,219,556	-				-0.0
1,219,556	-				+0.1
1,219,556	-				+0.3
1,219,567	+				-0.2
1,219,568	-				+0.8
1,219,628	+				-0.1
1,219,628	+				-0.1
1,219,650	+				+0.3
1,219,654	+				+0.1
1,219,654	+				-0.0
1,219,654	+				-0.2
1,219,654	+				+0.4
1,219,654	+				-0.3
1,219,654	+				-0.1
1,219,655	-				+0.2
1,219,655	-				-0.2
1,219,655	-				+0.0
1,219,655	-				-0.4
1,219,681	+				-0.4
1,219,682	-				+0.1
1,219,723	+				+0.6
1,219,723	+				+0.1
1,219,723	+				+0.0
1,219,723	+				-1.3
1,219,723	+				+0.9
1,219,723	+				-0.2
1,219,723	+				+0.6
1,219,724	-				-0.3
1,219,724	-				-0.6
1,219,724	-				+0.3
1,219,724	-				+0.5
1,219,724	-				+0.5
1,219,771	+				-0.3
1,219,771	+				-0.4
1,219,771	+				-0.1
1,219,772	-				+0.6
1,219,772	-				+0.4
1,219,772	-				-0.0
1,219,772	-				-0.2
1,219,891	+				-0.2
1,219,892	-				+0.6
1,219,892	-				-0.1
1,219,954	+				-0.1
1,219,955	-				+0.2
1,219,955	-				+0.2
1,219,971	+				+0.0
1,219,971	+				-0.5
1,219,971	-				+0.8
1,219,972	-				-0.3
1,219,972	-				+0.1
1,219,972	-				+0.6
1,219,972	-				+0.1
1,220,059	-		GFF2335	0.16	+0.8
1,220,059	-		GFF2335	0.16	-0.9
1,220,059	-		GFF2335	0.16	-0.2
1,220,110	+		GFF2335	0.22	-0.3
1,220,110	+		GFF2335	0.22	+0.6
1,220,111	-		GFF2335	0.22	-1.2
1,220,111	-		GFF2335	0.22	+0.0
1,220,181	+		GFF2335	0.30	-0.5
1,220,182	-		GFF2335	0.30	-0.7
1,220,185	+		GFF2335	0.30	+0.6
1,220,185	+		GFF2335	0.30	+1.0
1,220,185	+		GFF2335	0.30	-0.2
1,220,185	+		GFF2335	0.30	+0.4
1,220,185	+		GFF2335	0.30	+0.2
1,220,185	+		GFF2335	0.30	+0.3
1,220,185	+		GFF2335	0.30	+1.0
1,220,186	-		GFF2335	0.30	+1.1
1,220,186	-		GFF2335	0.30	-0.3