Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2312

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
1,195,409	-		GFF2311	0.38	+0.7
1,195,631	-		GFF2311	0.54	+0.6
1,195,631	-		GFF2311	0.54	-0.2
1,195,631	-		GFF2311	0.54	+0.8
1,195,631	-		GFF2311	0.54	+0.5
1,195,631	-		GFF2311	0.54	+0.3
1,195,810	+		GFF2311	0.66	+1.8
1,195,811	-		GFF2311	0.67	-0.2
1,195,939	+		GFF2311	0.76	-0.8
1,195,939	+		GFF2311	0.76	-0.5
1,196,066	-		GFF2311	0.85	-0.3
1,196,066	-		GFF2311	0.85	+0.6
1,196,185	+				+1.2
1,196,185	+				+0.6
1,196,186	-				+0.1
1,196,186	-				-0.3
1,196,186	-				+1.1
1,196,424	+		GFF2312	0.14	-1.3
1,196,424	+		GFF2312	0.14	+1.4
1,196,604	+		GFF2312	0.31	+0.0
1,196,604	+		GFF2312	0.31	+1.0
1,196,605	-		GFF2312	0.31	-0.1
1,196,605	-		GFF2312	0.31	+0.5
1,196,605	-		GFF2312	0.31	+0.4
1,196,605	-		GFF2312	0.31	+0.5
1,196,745	+		GFF2312	0.43	+0.8
1,196,745	+		GFF2312	0.43	-0.1
1,196,745	+		GFF2312	0.43	-0.2
1,196,994	+		GFF2312	0.66	+0.4
1,197,367	+				-1.8
1,197,367	+				-0.6
1,197,367	+				-0.1
1,197,367	+				+0.7
1,197,368	-				+0.3
1,197,368	-				-0.0
1,197,596	-		GFF2313	0.20	-0.3
1,197,655	+		GFF2313	0.27	+0.2
1,197,655	+		GFF2313	0.27	+0.0
1,197,656	-		GFF2313	0.27	-0.2
1,197,682	+		GFF2313	0.31	-0.3
1,197,682	+		GFF2313	0.31	+0.4
1,197,682	+		GFF2313	0.31	-1.1
1,197,856	+		GFF2313	0.53	+0.2
1,197,856	+		GFF2313	0.53	-0.0
1,197,856	+		GFF2313	0.53	+0.3
1,197,856	+		GFF2313	0.53	+0.6
1,197,856	+		GFF2313	0.53	+1.0
1,197,857	-		GFF2313	0.53	-0.3
1,197,857	-		GFF2313	0.53	+0.0
1,197,857	-		GFF2313	0.53	-1.1
1,197,946	+		GFF2313	0.64	+0.6
1,197,946	+		GFF2313	0.64	+0.6
1,197,946	+		GFF2313	0.64	+0.7
1,197,947	-		GFF2313	0.64	-0.3
1,197,947	-		GFF2313	0.64	-0.0
1,197,947	-		GFF2313	0.64	+0.2
1,197,947	-		GFF2313	0.64	-0.5
1,198,249	+				-0.1
1,198,249	+				-0.9
1,198,296	+				-0.2
1,198,296	+				+1.6