Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2311

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
1,194,221	+		GFF2310	0.37	+0.1
1,194,221	+		GFF2310	0.37	+0.7
1,194,222	-		GFF2310	0.37	+0.8
1,194,275	+		GFF2310	0.43	-0.8
1,194,276	-		GFF2310	0.43	-0.2
1,194,276	-		GFF2310	0.43	-1.6
1,194,276	-		GFF2310	0.43	+0.2
1,194,276	-		GFF2310	0.43	-0.4
1,194,276	-		GFF2310	0.43	-1.8
1,194,512	+		GFF2310	0.67	-0.5
1,194,512	+		GFF2310	0.67	+0.6
1,194,513	-		GFF2310	0.67	+0.0
1,194,564	-		GFF2310	0.72	-0.2
1,194,665	+		GFF2310	0.82	+1.4
1,194,665	+		GFF2310	0.82	-1.5
1,194,824	-				-0.1
1,194,961	+				+0.6
1,194,961	+				+0.0
1,194,962	-				+0.6
1,194,962	-				-0.4
1,195,022	-		GFF2311	0.10	-0.1
1,195,231	+		GFF2311	0.25	+0.2
1,195,231	+		GFF2311	0.25	-0.7
1,195,232	-		GFF2311	0.25	+0.2
1,195,234	+		GFF2311	0.25	+0.4
1,195,234	+		GFF2311	0.25	+0.1
1,195,234	+		GFF2311	0.25	+0.8
1,195,234	+		GFF2311	0.25	-0.2
1,195,234	+		GFF2311	0.25	-0.0
1,195,234	+		GFF2311	0.25	-0.8
1,195,234	+		GFF2311	0.25	+0.2
1,195,234	+		GFF2311	0.25	-1.9
1,195,235	-		GFF2311	0.25	-0.1
1,195,235	-		GFF2311	0.25	+2.0
1,195,235	-		GFF2311	0.25	+0.2
1,195,236	+		GFF2311	0.25	-0.2
1,195,409	-		GFF2311	0.38	+0.7
1,195,631	-		GFF2311	0.54	+0.6
1,195,631	-		GFF2311	0.54	-0.2
1,195,631	-		GFF2311	0.54	+0.8
1,195,631	-		GFF2311	0.54	+0.5
1,195,631	-		GFF2311	0.54	+0.3
1,195,810	+		GFF2311	0.66	+1.8
1,195,811	-		GFF2311	0.67	-0.2
1,195,939	+		GFF2311	0.76	-0.8
1,195,939	+		GFF2311	0.76	-0.5
1,196,066	-		GFF2311	0.85	-0.3
1,196,066	-		GFF2311	0.85	+0.6
1,196,185	+				+1.2
1,196,185	+				+0.6
1,196,186	-				+0.2
1,196,186	-				-0.3
1,196,186	-				+0.8
1,196,186	-				+1.2
1,196,424	+		GFF2312	0.14	-1.3
1,196,424	+		GFF2312	0.14	+1.4
1,196,604	+		GFF2312	0.31	+0.0
1,196,604	+		GFF2312	0.31	+1.1
1,196,605	-		GFF2312	0.31	-0.1
1,196,605	-		GFF2312	0.31	+0.5
1,196,605	-		GFF2312	0.31	+0.4
1,196,605	-		GFF2312	0.31	+0.5
1,196,745	+		GFF2312	0.43	+0.8
1,196,745	+		GFF2312	0.43	-0.0
1,196,745	+		GFF2312	0.43	-0.2
1,196,994	+		GFF2312	0.66	+0.4