Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2277

Experiment: Ying_sugar7 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 1
1,161,057	+				+0.3
1,161,103	+				+0.5
1,161,103	+				+0.4
1,161,103	+				-0.7
1,161,103	+				+0.3
1,161,103	+				+1.2
1,161,103	+				-0.7
1,161,103	+				+0.0
1,161,104	-				-0.8
1,161,104	-				-0.8
1,161,104	-				-0.9
1,161,104	-				+1.3
1,161,104	-				+0.4
1,161,104	-				-1.4
1,161,104	-				-0.7
1,161,104	-				+0.9
1,161,222	+				-0.6
1,161,222	+				-0.5
1,161,222	+				+0.3
1,161,222	+				-0.1
1,161,226	+				+0.8
1,161,226	+				+0.4
1,161,227	-				-0.2
1,161,227	-				+0.2
1,161,227	-				+0.9
1,161,284	-		GFF2275	0.30	+0.8
1,161,377	+		GFF2275	0.84	-1.6
1,161,378	-		GFF2275	0.85	+0.7
1,161,436	+				-0.6
1,161,436	+				+1.0
1,161,436	+				+0.3
1,161,436	+				-1.5
1,161,436	+				+0.0
1,161,436	+				+1.1
1,161,437	-				-0.2
1,161,437	-				+1.4
1,161,437	-				-0.4
1,161,437	-				-0.2
1,161,619	+		GFF2276	0.64	-0.2
1,161,619	+		GFF2276	0.64	-0.9
1,161,619	+		GFF2276	0.64	-0.4
1,161,672	+				-0.3
1,161,672	+				+0.0
1,161,672	+				-0.9
1,161,673	-				+1.7
1,161,673	-				-0.4
1,161,673	-				+0.5
1,161,718	+				+0.6
1,161,718	+				+0.2
1,161,718	+				+0.0
1,161,718	+				+0.9
1,161,718	+				+0.1
1,161,718	+				-0.7
1,161,718	+				-0.2
1,161,718	+				-0.2
1,161,718	+				+0.1
1,161,718	+				+0.1
1,161,718	+				+0.0
1,161,718	+				+0.6
1,161,718	+				+0.4
1,161,718	+				+2.9
1,161,718	+				+0.2
1,161,719	-				-0.5
1,161,719	-				+0.3
1,161,719	-				+0.2
1,161,719	-				+0.4
1,161,719	-				-0.7
1,161,719	-				-0.7
1,161,719	-				-0.1
1,161,719	-				-0.3
1,161,719	-				-0.3
1,161,719	-				+0.4
1,161,719	-				+0.3
1,161,720	+				+0.2
1,161,720	+				+0.1
1,161,720	+				+0.1
1,161,720	+				-0.1
1,161,720	+				+0.1
1,161,720	+				-0.0
1,161,919	+				-0.6
1,161,919	+				+0.3
1,161,919	+				-0.2
1,161,919	+				-0.3
1,161,955	+				+1.1
1,161,955	+				+0.1
1,161,956	-				-0.3
1,161,956	-				+0.4
1,161,956	-				+1.6
1,161,956	-				+0.1
1,161,994	+				+0.3
1,161,994	+				-0.1
1,161,994	+				+0.2
1,161,994	+				+0.3
1,161,994	+				-1.0
1,161,994	+				+0.1
1,161,994	+				-0.1
1,161,994	+				+1.0
1,161,994	+				-0.1
1,161,994	+				+0.9
1,161,994	+				-0.2
1,161,994	+				+1.6
1,161,994	+				-0.6
1,161,994	+				-0.7
1,161,994	+				-0.5
1,161,994	+				-0.5
1,161,994	+				-1.2
1,161,994	+				-0.4
1,161,994	+				+0.5
1,161,994	+				-0.4
1,161,994	+				+0.7
1,161,994	+				+0.2
1,161,994	+				-0.8
1,161,994	+				-0.3
1,161,994	+				+0.4
1,161,994	+				-0.4
1,161,994	+				+1.1
1,161,994	+				-0.0
1,161,995	-				-0.2
1,161,995	-				+0.6
1,161,995	-				+0.3
1,161,995	-				-0.1
1,161,995	-				+0.4
1,161,995	-				-0.3
1,161,995	-				+0.5
1,161,995	-				+0.5
1,161,995	-				-0.2
1,161,995	-				-0.3
1,161,995	-				-0.3
1,161,995	-				+0.0
1,161,995	-				-2.1
1,161,995	-				+0.5
1,161,995	-				+0.7
1,161,995	-				-0.1
1,161,995	-				-0.8
1,161,995	-				+0.1
1,161,995	-				-0.8
1,161,995	-				-0.6
1,162,055	+				+0.3
1,162,055	+				+1.1
1,162,055	+				+0.3
1,162,056	-				+0.3
1,162,108	+		GFF2277	0.30	-0.5
1,162,108	+		GFF2277	0.30	-1.2
1,162,108	+		GFF2277	0.30	+0.7
1,162,108	+		GFF2277	0.30	-0.2
1,162,108	+		GFF2277	0.30	+0.5
1,162,108	+		GFF2277	0.30	+0.4
1,162,108	+		GFF2277	0.30	-0.4
1,162,109	-		GFF2277	0.31	-0.7
1,162,109	-		GFF2277	0.31	-0.5
1,162,109	-		GFF2277	0.31	-0.4
1,162,222	+				-0.2
1,162,239	+				-0.4
1,162,273	+				-0.3
1,162,273	+				+0.1
1,162,273	+				-0.4
1,162,273	+				+0.6
1,162,273	+				+0.5
1,162,274	-				-1.2
1,162,274	-				+0.1
1,162,274	-				+0.7
1,162,278	+				-0.8
1,162,278	+				+0.1
1,162,278	+				+0.1
1,162,278	+				-0.1
1,162,278	+				-0.3
1,162,278	+				-0.1
1,162,278	+				+0.5
1,162,279	-				-0.1
1,162,279	-				+0.3
1,162,279	-				+0.4
1,162,288	+				-0.5
1,162,288	+				-0.5
1,162,311	+				+1.4
1,162,311	+				-0.6
1,162,312	-				+0.3
1,162,312	-				+0.8
1,162,312	-				-0.2
1,162,325	+				+0.2
1,162,325	+				+0.3
1,162,325	+				-0.5
1,162,325	+				-0.4
1,162,325	+				-0.3
1,162,325	+				+0.5
1,162,326	-				+0.3
1,162,326	-				+0.2
1,162,326	-				-0.2
1,162,541	-				-0.9
1,162,541	-				+0.0
1,162,609	+				-0.1
1,162,609	+				+0.0
1,162,609	+				+0.3
1,162,609	+				-0.0
1,162,609	+				-0.2
1,162,609	+				+1.6
1,162,609	+				-0.2
1,162,610	-				-1.7
1,162,610	-				+0.2
1,162,610	-				-0.0
1,162,621	+				-0.9
1,162,622	-				-0.1
1,162,804	+		GFF2278	0.14	-0.2
1,162,805	-		GFF2278	0.14	-0.3
1,162,805	-		GFF2278	0.14	-0.3
1,162,805	-		GFF2278	0.14	-1.6
1,162,805	-		GFF2278	0.14	+0.2
1,162,914	-		GFF2278	0.18	-0.6
1,162,930	+		GFF2278	0.19	-0.2
1,162,930	+		GFF2278	0.19	-0.0
1,162,930	+		GFF2278	0.19	-0.3
1,162,931	-		GFF2278	0.19	+0.1
1,162,931	-		GFF2278	0.19	+0.8
1,162,965	+		GFF2278	0.20	+2.2