Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2217

Experiment: Ying_sugar7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2216 and GFF2217 overlap by 4 nucleotidesGFF2217 and GFF2218 are separated by 26 nucleotidesGFF2218 and GFF2219 overlap by 8 nucleotides GFF2216 - [NiFe] hydrogenase metallocenter assembly protein HypF, at 1,105,378 to 1,106,553 GFF2216 GFF2217 - [NiFe] hydrogenase nickel incorporation-associated protein HypB, at 1,106,550 to 1,107,410 GFF2217 GFF2218 - [NiFe] hydrogenase nickel incorporation protein HypA, at 1,107,437 to 1,107,784 GFF2218 GFF2219 - Hydrogenase maturation factor HoxV/HupK, at 1,107,777 to 1,108,931 GFF2219 Position (kb) 1106 1107 1108Strain fitness (log2 ratio) -1 0 1at 1106.774 kb on - strand, within GFF2217at 1107.399 kb on + strandat 1107.400 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1
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1,106,774 - GFF2217 0.26 +0.4
1,107,399 + -0.1
1,107,400 - +0.1

Or see this region's nucleotide sequence