Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2068 and GFF2069 are separated by 48 nucleotides GFF2069 and GFF2070 are separated by 5 nucleotides GFF2070 and GFF2071 overlap by 4 nucleotides
GFF2068 - Regulatory protein, LuxR:Tetratricopeptide TPR_4, at 952,322 to 955,021
GFF2068
GFF2069 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 955,070 to 956,254
GFF2069
GFF2070 - Enoyl-CoA hydratase (EC 4.2.1.17), at 956,260 to 957,072
GFF2070
GFF2071 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 957,069 to 957,932
GFF2071
Position (kb) 955
956
957 Strain fitness (log2 ratio) -1
0
1 at 954.113 kb on + strand, within GFF2068 at 954.240 kb on - strand, within GFF2068 at 954.740 kb on + strand, within GFF2068 at 954.878 kb on + strand at 954.878 kb on + strand at 954.879 kb on - strand at 955.045 kb on - strand at 955.154 kb on + strand at 955.155 kb on - strand at 955.155 kb on - strand at 955.337 kb on + strand, within GFF2069 at 955.338 kb on - strand, within GFF2069 at 955.402 kb on + strand, within GFF2069 at 955.403 kb on + strand, within GFF2069 at 955.404 kb on - strand, within GFF2069 at 955.556 kb on + strand, within GFF2069 at 955.595 kb on + strand, within GFF2069 at 955.596 kb on - strand, within GFF2069 at 955.658 kb on + strand, within GFF2069 at 955.841 kb on + strand, within GFF2069 at 955.910 kb on + strand, within GFF2069 at 956.147 kb on + strand at 956.159 kb on + strand at 956.269 kb on + strand at 956.756 kb on - strand, within GFF2070 at 957.046 kb on + strand at 957.195 kb on + strand, within GFF2071 at 957.196 kb on - strand, within GFF2071
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 954,113 + GFF2068 0.66 +0.2 954,240 - GFF2068 0.71 +0.1 954,740 + GFF2068 0.90 +0.2 954,878 + +0.4 954,878 + +0.2 954,879 - +0.3 955,045 - -0.0 955,154 + -0.8 955,155 - -0.1 955,155 - +0.2 955,337 + GFF2069 0.23 -0.2 955,338 - GFF2069 0.23 -0.3 955,402 + GFF2069 0.28 +0.6 955,403 + GFF2069 0.28 -0.2 955,404 - GFF2069 0.28 +0.1 955,556 + GFF2069 0.41 -0.2 955,595 + GFF2069 0.44 -0.1 955,596 - GFF2069 0.44 -0.1 955,658 + GFF2069 0.50 +0.9 955,841 + GFF2069 0.65 -0.8 955,910 + GFF2069 0.71 -0.7 956,147 + +0.1 956,159 + +0.4 956,269 + +1.0 956,756 - GFF2070 0.61 +0.1 957,046 + +0.2 957,195 + GFF2071 0.15 +0.1 957,196 - GFF2071 0.15 -0.7
Or see this region's nucleotide sequence