Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1966 and GFF1967 are separated by 133 nucleotides GFF1967 and GFF1968 are separated by 102 nucleotides GFF1968 and GFF1969 are separated by 23 nucleotides GFF1969 and GFF1970 are separated by 70 nucleotides
GFF1966 - Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32), at 839,345 to 841,204
GFF1966
GFF1967 - hypothetical protein, at 841,338 to 841,910
GFF1967
GFF1968 - FIG000557: hypothetical protein co-occurring with RecR, at 842,013 to 843,011
GFF1968
GFF1969 - Ser/Thr protein phosphatase family protein, at 843,035 to 843,829
GFF1969
GFF1970 - Universal stress family protein, at 843,900 to 844,322
GFF1970
Position (kb) 842
843
844 Strain fitness (log2 ratio) -2
-1
0
1
2 at 841.062 kb on - strand at 841.062 kb on - strand at 841.142 kb on + strand at 841.142 kb on + strand at 841.143 kb on - strand at 841.143 kb on - strand at 841.272 kb on - strand at 841.286 kb on + strand at 841.286 kb on + strand at 841.286 kb on + strand at 841.287 kb on - strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.345 kb on + strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.346 kb on - strand at 841.348 kb on + strand at 841.348 kb on + strand at 841.348 kb on + strand at 841.348 kb on + strand at 841.348 kb on + strand at 841.348 kb on + strand at 841.348 kb on + strand at 841.348 kb on + strand at 841.348 kb on + strand at 841.348 kb on + strand at 841.348 kb on + strand at 841.348 kb on + strand at 841.348 kb on + strand at 841.348 kb on + strand at 841.349 kb on - strand at 841.349 kb on - strand at 841.349 kb on - strand at 841.349 kb on - strand at 841.349 kb on - strand at 841.349 kb on - strand at 841.349 kb on - strand at 841.349 kb on - strand at 841.349 kb on - strand at 841.349 kb on - strand at 841.349 kb on - strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.900 kb on + strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.901 kb on - strand at 841.926 kb on + strand at 841.927 kb on - strand at 841.953 kb on + strand at 841.953 kb on + strand at 841.953 kb on + strand at 841.954 kb on - strand at 841.954 kb on - strand at 841.954 kb on - strand at 841.956 kb on + strand at 841.956 kb on + strand at 841.956 kb on + strand at 841.956 kb on + strand at 841.956 kb on + strand at 841.957 kb on - strand at 841.957 kb on - strand at 841.957 kb on - strand at 841.957 kb on - strand at 841.957 kb on - strand at 841.957 kb on - strand at 841.957 kb on - strand at 841.957 kb on - strand at 841.957 kb on - strand at 841.957 kb on - strand at 841.957 kb on - strand at 841.957 kb on - strand at 841.971 kb on + strand at 841.972 kb on - strand at 842.001 kb on - strand at 842.003 kb on - strand at 842.018 kb on - strand at 842.410 kb on + strand, within GFF1968 at 842.410 kb on + strand, within GFF1968 at 842.556 kb on + strand, within GFF1968 at 842.557 kb on - strand, within GFF1968 at 842.557 kb on - strand, within GFF1968 at 842.557 kb on - strand, within GFF1968 at 842.568 kb on + strand, within GFF1968 at 842.568 kb on + strand, within GFF1968 at 842.568 kb on + strand, within GFF1968 at 842.569 kb on - strand, within GFF1968 at 842.569 kb on - strand, within GFF1968 at 842.569 kb on - strand, within GFF1968 at 842.569 kb on - strand, within GFF1968 at 842.628 kb on + strand, within GFF1968 at 842.628 kb on + strand, within GFF1968 at 842.628 kb on + strand, within GFF1968 at 842.628 kb on + strand, within GFF1968 at 842.628 kb on + strand, within GFF1968 at 842.628 kb on + strand, within GFF1968 at 842.628 kb on + strand, within GFF1968 at 842.629 kb on - strand, within GFF1968 at 842.629 kb on - strand, within GFF1968 at 842.629 kb on - strand, within GFF1968 at 842.629 kb on - strand, within GFF1968 at 842.629 kb on - strand, within GFF1968 at 842.629 kb on - strand, within GFF1968 at 842.629 kb on - strand, within GFF1968 at 842.629 kb on - strand, within GFF1968 at 842.783 kb on + strand, within GFF1968 at 842.783 kb on + strand, within GFF1968 at 842.783 kb on + strand, within GFF1968 at 842.783 kb on + strand, within GFF1968 at 842.784 kb on - strand, within GFF1968 at 842.784 kb on - strand, within GFF1968 at 842.784 kb on - strand, within GFF1968 at 842.784 kb on - strand, within GFF1968 at 842.938 kb on + strand at 842.959 kb on - strand at 843.087 kb on + strand at 843.087 kb on + strand at 843.088 kb on - strand at 843.143 kb on + strand, within GFF1969 at 843.143 kb on + strand, within GFF1969 at 843.143 kb on + strand, within GFF1969 at 843.143 kb on + strand, within GFF1969 at 843.144 kb on - strand, within GFF1969 at 843.144 kb on - strand, within GFF1969 at 843.144 kb on - strand, within GFF1969 at 843.144 kb on - strand, within GFF1969 at 843.248 kb on + strand, within GFF1969 at 843.249 kb on - strand, within GFF1969 at 843.249 kb on - strand, within GFF1969 at 843.383 kb on + strand, within GFF1969 at 843.383 kb on + strand, within GFF1969 at 843.383 kb on + strand, within GFF1969 at 843.383 kb on + strand, within GFF1969 at 843.383 kb on + strand, within GFF1969 at 843.384 kb on - strand, within GFF1969 at 843.384 kb on - strand, within GFF1969 at 843.413 kb on + strand, within GFF1969 at 843.414 kb on - strand, within GFF1969 at 843.431 kb on + strand, within GFF1969 at 843.431 kb on + strand, within GFF1969 at 843.431 kb on + strand, within GFF1969 at 843.431 kb on + strand, within GFF1969 at 843.432 kb on - strand, within GFF1969 at 843.432 kb on - strand, within GFF1969 at 843.432 kb on - strand, within GFF1969 at 843.432 kb on - strand, within GFF1969 at 843.749 kb on + strand, within GFF1969 at 843.749 kb on + strand, within GFF1969 at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.861 kb on + strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.862 kb on - strand at 843.863 kb on - strand at 843.883 kb on + strand at 843.883 kb on + strand at 843.883 kb on + strand at 843.883 kb on + strand at 843.883 kb on + strand at 843.883 kb on + strand at 843.883 kb on + strand at 843.883 kb on + strand at 843.883 kb on + strand at 843.883 kb on + strand at 843.884 kb on - strand at 843.884 kb on - strand at 843.884 kb on - strand at 843.884 kb on - strand at 843.933 kb on + strand at 843.933 kb on + strand at 843.934 kb on - strand at 843.934 kb on - strand at 843.934 kb on - strand at 843.934 kb on - strand at 843.954 kb on + strand, within GFF1970 at 843.954 kb on + strand, within GFF1970 at 843.954 kb on + strand, within GFF1970 at 843.954 kb on + strand, within GFF1970 at 843.954 kb on + strand, within GFF1970 at 843.954 kb on + strand, within GFF1970 at 843.955 kb on - strand, within GFF1970 at 843.955 kb on - strand, within GFF1970
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 841,062 - +0.5 841,062 - -0.2 841,142 + +0.3 841,142 + +0.2 841,143 - -1.1 841,143 - -0.6 841,272 - -0.1 841,286 + +0.1 841,286 + +0.0 841,286 + +0.2 841,287 - -0.1 841,345 + +0.7 841,345 + +0.3 841,345 + +0.5 841,345 + +0.4 841,345 + +1.0 841,345 + -0.0 841,345 + +0.7 841,345 + -0.1 841,345 + -0.0 841,345 + -0.3 841,345 + +0.8 841,345 + +0.4 841,345 + +0.7 841,345 + -1.0 841,345 + -0.0 841,345 + -0.3 841,346 - +0.6 841,346 - +0.8 841,346 - +0.8 841,346 - +0.1 841,346 - -1.3 841,346 - +0.4 841,346 - +0.5 841,346 - +0.8 841,346 - +0.1 841,346 - +0.7 841,346 - -0.0 841,346 - +0.6 841,346 - -0.0 841,346 - +0.9 841,346 - +0.8 841,346 - +1.4 841,346 - +0.7 841,346 - +0.1 841,348 + +1.2 841,348 + +0.7 841,348 + -0.0 841,348 + +0.7 841,348 + +0.6 841,348 + -0.0 841,348 + +0.2 841,348 + +0.1 841,348 + +0.6 841,348 + +0.6 841,348 + -0.2 841,348 + -0.4 841,348 + +1.4 841,348 + +0.1 841,349 - +0.9 841,349 - +1.2 841,349 - +0.3 841,349 - +0.5 841,349 - +0.3 841,349 - +0.2 841,349 - +0.3 841,349 - +0.5 841,349 - +0.4 841,349 - -0.7 841,349 - +0.2 841,900 + -0.0 841,900 + -0.5 841,900 + -0.5 841,900 + +0.1 841,900 + -0.3 841,900 + -0.7 841,900 + +0.9 841,900 + +0.8 841,900 + +0.3 841,900 + +0.8 841,900 + -0.2 841,900 + -0.1 841,900 + +1.6 841,900 + -0.7 841,900 + +0.3 841,900 + -0.1 841,900 + +0.4 841,900 + -0.4 841,900 + +0.1 841,900 + +0.5 841,900 + -0.3 841,900 + -0.7 841,900 + +0.3 841,900 + +0.3 841,900 + -0.6 841,900 + -0.7 841,900 + -0.5 841,900 + +0.1 841,900 + +0.1 841,900 + +0.1 841,900 + +0.2 841,900 + +0.1 841,900 + +0.4 841,900 + -0.4 841,900 + +0.7 841,900 + -0.3 841,900 + +0.5 841,900 + -0.6 841,900 + -0.2 841,900 + -0.5 841,900 + -0.0 841,900 + -0.2 841,900 + -0.5 841,900 + -0.6 841,900 + -0.4 841,900 + +0.6 841,900 + -1.3 841,901 - +1.0 841,901 - -0.1 841,901 - -0.1 841,901 - +0.4 841,901 - +1.3 841,901 - -0.6 841,901 - +1.0 841,901 - +0.6 841,901 - +1.9 841,901 - -0.7 841,901 - +0.2 841,901 - +0.3 841,901 - -0.2 841,901 - +0.1 841,901 - +0.1 841,901 - -0.4 841,901 - -1.6 841,901 - -0.0 841,901 - +0.5 841,901 - +0.4 841,901 - +0.3 841,901 - +0.8 841,901 - +0.3 841,901 - +0.4 841,901 - +0.4 841,901 - -0.0 841,901 - -1.1 841,901 - -0.4 841,901 - +1.0 841,901 - -0.2 841,901 - -0.6 841,901 - -0.2 841,901 - +0.7 841,901 - +0.1 841,901 - -0.2 841,901 - +0.0 841,901 - +0.2 841,901 - -0.1 841,926 + -0.8 841,927 - -0.3 841,953 + +1.6 841,953 + +0.2 841,953 + -0.1 841,954 - -0.3 841,954 - -0.3 841,954 - -0.6 841,956 + -0.3 841,956 + -0.8 841,956 + -1.0 841,956 + +0.3 841,956 + -1.4 841,957 - -1.0 841,957 - -1.5 841,957 - -0.6 841,957 - -1.3 841,957 - -0.5 841,957 - -1.2 841,957 - -2.1 841,957 - -1.5 841,957 - -1.3 841,957 - -1.4 841,957 - -0.7 841,957 - -0.3 841,971 + +0.1 841,972 - +0.5 842,001 - +0.4 842,003 - -0.2 842,018 - -0.3 842,410 + GFF1968 0.40 +1.0 842,410 + GFF1968 0.40 +0.8 842,556 + GFF1968 0.54 -0.4 842,557 - GFF1968 0.54 +0.6 842,557 - GFF1968 0.54 -0.0 842,557 - GFF1968 0.54 +0.7 842,568 + GFF1968 0.56 -0.4 842,568 + GFF1968 0.56 +0.3 842,568 + GFF1968 0.56 -0.1 842,569 - GFF1968 0.56 -1.2 842,569 - GFF1968 0.56 +0.7 842,569 - GFF1968 0.56 +0.2 842,569 - GFF1968 0.56 -0.2 842,628 + GFF1968 0.62 -0.1 842,628 + GFF1968 0.62 -0.0 842,628 + GFF1968 0.62 +0.3 842,628 + GFF1968 0.62 -1.2 842,628 + GFF1968 0.62 -0.1 842,628 + GFF1968 0.62 +1.0 842,628 + GFF1968 0.62 +1.1 842,629 - GFF1968 0.62 +0.5 842,629 - GFF1968 0.62 +0.1 842,629 - GFF1968 0.62 +0.1 842,629 - GFF1968 0.62 +0.3 842,629 - GFF1968 0.62 +0.5 842,629 - GFF1968 0.62 -0.3 842,629 - GFF1968 0.62 -0.6 842,629 - GFF1968 0.62 +0.3 842,783 + GFF1968 0.77 +0.6 842,783 + GFF1968 0.77 +0.7 842,783 + GFF1968 0.77 +0.3 842,783 + GFF1968 0.77 +0.5 842,784 - GFF1968 0.77 +0.5 842,784 - GFF1968 0.77 +0.3 842,784 - GFF1968 0.77 +0.2 842,784 - GFF1968 0.77 +1.0 842,938 + +0.8 842,959 - -0.6 843,087 + +0.5 843,087 + +0.0 843,088 - -0.6 843,143 + GFF1969 0.14 -0.4 843,143 + GFF1969 0.14 -0.2 843,143 + GFF1969 0.14 -0.4 843,143 + GFF1969 0.14 -0.7 843,144 - GFF1969 0.14 -0.7 843,144 - GFF1969 0.14 +0.1 843,144 - GFF1969 0.14 +0.3 843,144 - GFF1969 0.14 -0.0 843,248 + GFF1969 0.27 +1.0 843,249 - GFF1969 0.27 +0.2 843,249 - GFF1969 0.27 +0.0 843,383 + GFF1969 0.44 +0.3 843,383 + GFF1969 0.44 -0.1 843,383 + GFF1969 0.44 +0.6 843,383 + GFF1969 0.44 -0.0 843,383 + GFF1969 0.44 -0.9 843,384 - GFF1969 0.44 +0.0 843,384 - GFF1969 0.44 -0.1 843,413 + GFF1969 0.48 +0.0 843,414 - GFF1969 0.48 -0.7 843,431 + GFF1969 0.50 +0.1 843,431 + GFF1969 0.50 -0.8 843,431 + GFF1969 0.50 +0.8 843,431 + GFF1969 0.50 +0.3 843,432 - GFF1969 0.50 +0.7 843,432 - GFF1969 0.50 -0.1 843,432 - GFF1969 0.50 -0.2 843,432 - GFF1969 0.50 -0.5 843,749 + GFF1969 0.90 -0.0 843,749 + GFF1969 0.90 -0.2 843,861 + -0.0 843,861 + -0.3 843,861 + -0.3 843,861 + -0.2 843,861 + +1.2 843,861 + -0.2 843,861 + -0.3 843,861 + -0.2 843,861 + +0.6 843,861 + -1.2 843,861 + -1.1 843,861 + -0.5 843,861 + +0.6 843,861 + -1.1 843,861 + -0.2 843,861 + -0.2 843,861 + +0.0 843,861 + -0.6 843,862 - -0.5 843,862 - +0.4 843,862 - +0.0 843,862 - -0.4 843,862 - +1.4 843,862 - +0.6 843,862 - -0.6 843,862 - +0.2 843,862 - -1.2 843,862 - -0.3 843,862 - +0.2 843,862 - -0.2 843,862 - -0.4 843,862 - -0.1 843,862 - -0.1 843,862 - -0.6 843,862 - -0.3 843,862 - +0.1 843,862 - -1.1 843,862 - -0.2 843,862 - -0.6 843,862 - -0.6 843,863 - -0.7 843,883 + +0.2 843,883 + +0.1 843,883 + +0.1 843,883 + -0.0 843,883 + +0.4 843,883 + +0.2 843,883 + +0.6 843,883 + +0.1 843,883 + +0.2 843,883 + +0.2 843,884 - +0.1 843,884 - +0.0 843,884 - +0.1 843,884 - +0.0 843,933 + +0.4 843,933 + -0.1 843,934 - -1.3 843,934 - -0.5 843,934 - +0.1 843,934 - +0.0 843,954 + GFF1970 0.13 -0.1 843,954 + GFF1970 0.13 +0.1 843,954 + GFF1970 0.13 +0.1 843,954 + GFF1970 0.13 -0.4 843,954 + GFF1970 0.13 +1.1 843,954 + GFF1970 0.13 -0.7 843,955 - GFF1970 0.13 -1.1 843,955 - GFF1970 0.13 -0.4
Or see this region's nucleotide sequence