Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1933 and GFF1934 overlap by 4 nucleotides GFF1934 and GFF1935 are separated by 9 nucleotides GFF1935 and GFF1936 are separated by 111 nucleotides
GFF1933 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 808,106 to 809,257
GFF1933
GFF1934 - Rubredoxin-NAD(+) reductase (EC 1.18.1.1), at 809,254 to 810,477
GFF1934
GFF1935 - hypothetical protein, at 810,487 to 810,888
GFF1935
GFF1936 - Type III restriction-modification enzyme, helicase subunit, at 811,000 to 811,746
GFF1936
Position (kb) 809
810
811 Strain fitness (log2 ratio) -1
0
1 at 808.406 kb on + strand, within GFF1933 at 808.406 kb on + strand, within GFF1933 at 808.406 kb on + strand, within GFF1933 at 808.406 kb on + strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.407 kb on - strand, within GFF1933 at 808.512 kb on - strand, within GFF1933 at 808.754 kb on + strand, within GFF1933 at 808.755 kb on - strand, within GFF1933 at 808.755 kb on - strand, within GFF1933 at 808.755 kb on - strand, within GFF1933 at 809.132 kb on + strand, within GFF1933 at 809.281 kb on + strand at 809.281 kb on + strand at 809.281 kb on + strand at 809.281 kb on + strand at 809.281 kb on + strand at 809.282 kb on - strand at 809.282 kb on - strand at 809.282 kb on - strand at 809.282 kb on - strand at 809.309 kb on - strand at 809.611 kb on + strand, within GFF1934 at 809.611 kb on + strand, within GFF1934 at 809.611 kb on + strand, within GFF1934 at 809.611 kb on + strand, within GFF1934 at 809.611 kb on + strand, within GFF1934 at 809.611 kb on + strand, within GFF1934 at 809.612 kb on - strand, within GFF1934 at 809.612 kb on - strand, within GFF1934 at 809.612 kb on - strand, within GFF1934 at 809.881 kb on + strand, within GFF1934 at 809.882 kb on - strand, within GFF1934 at 809.882 kb on - strand, within GFF1934 at 809.882 kb on - strand, within GFF1934 at 810.344 kb on + strand, within GFF1934 at 810.415 kb on + strand at 810.415 kb on + strand at 810.572 kb on + strand, within GFF1935 at 810.600 kb on - strand, within GFF1935 at 810.900 kb on + strand at 810.901 kb on - strand at 810.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 808,406 + GFF1933 0.26 +0.5 808,406 + GFF1933 0.26 -0.2 808,406 + GFF1933 0.26 -0.1 808,406 + GFF1933 0.26 -0.5 808,407 - GFF1933 0.26 +1.1 808,407 - GFF1933 0.26 +0.0 808,407 - GFF1933 0.26 -0.2 808,407 - GFF1933 0.26 +1.1 808,407 - GFF1933 0.26 +0.2 808,407 - GFF1933 0.26 +0.2 808,512 - GFF1933 0.35 -0.8 808,754 + GFF1933 0.56 -0.5 808,755 - GFF1933 0.56 -0.0 808,755 - GFF1933 0.56 -0.1 808,755 - GFF1933 0.56 -0.0 809,132 + GFF1933 0.89 +1.1 809,281 + +0.6 809,281 + -1.0 809,281 + +1.4 809,281 + +0.4 809,281 + -0.1 809,282 - -0.8 809,282 - +0.3 809,282 - +0.6 809,282 - -1.1 809,309 - -0.8 809,611 + GFF1934 0.29 +0.4 809,611 + GFF1934 0.29 +0.9 809,611 + GFF1934 0.29 -0.2 809,611 + GFF1934 0.29 -0.3 809,611 + GFF1934 0.29 +0.6 809,611 + GFF1934 0.29 +1.6 809,612 - GFF1934 0.29 -0.7 809,612 - GFF1934 0.29 +0.6 809,612 - GFF1934 0.29 +0.2 809,881 + GFF1934 0.51 -0.1 809,882 - GFF1934 0.51 -0.1 809,882 - GFF1934 0.51 +0.7 809,882 - GFF1934 0.51 +0.1 810,344 + GFF1934 0.89 -0.3 810,415 + -0.0 810,415 + +0.1 810,572 + GFF1935 0.21 +0.0 810,600 - GFF1935 0.28 -0.2 810,900 + +0.8 810,901 - -0.1 810,901 - +0.2
Or see this region's nucleotide sequence