Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF166 and GFF167 are separated by 337 nucleotides GFF167 and GFF168 are separated by 33 nucleotides GFF168 and GFF169 are separated by 65 nucleotides
GFF166 - Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17), at 179,538 to 181,406
GFF166
GFF167 - FIG01200701: possible membrane protein, at 181,744 to 182,283
GFF167
GFF168 - Bll6585 protein, at 182,317 to 184,329
GFF168
GFF169 - Outer membrane protein romA, at 184,395 to 185,516
GFF169
Position (kb) 182
183
184
185 Strain fitness (log2 ratio) -1
0
1 at 181.557 kb on - strand at 181.644 kb on + strand at 181.644 kb on + strand at 181.645 kb on - strand at 181.687 kb on - strand at 181.687 kb on - strand at 182.053 kb on + strand, within GFF167 at 182.054 kb on - strand, within GFF167 at 182.171 kb on - strand, within GFF167 at 182.561 kb on + strand, within GFF168 at 182.561 kb on + strand, within GFF168 at 182.562 kb on - strand, within GFF168 at 182.562 kb on - strand, within GFF168 at 182.954 kb on + strand, within GFF168 at 182.954 kb on + strand, within GFF168 at 182.955 kb on - strand, within GFF168 at 182.987 kb on + strand, within GFF168 at 183.104 kb on + strand, within GFF168 at 183.104 kb on + strand, within GFF168 at 183.150 kb on - strand, within GFF168 at 183.335 kb on + strand, within GFF168 at 183.335 kb on + strand, within GFF168 at 183.336 kb on - strand, within GFF168 at 183.336 kb on - strand, within GFF168 at 183.521 kb on + strand, within GFF168 at 183.521 kb on + strand, within GFF168 at 183.521 kb on + strand, within GFF168 at 183.522 kb on - strand, within GFF168 at 183.525 kb on - strand, within GFF168 at 183.563 kb on + strand, within GFF168 at 183.989 kb on + strand, within GFF168 at 183.989 kb on + strand, within GFF168 at 184.169 kb on + strand at 184.169 kb on + strand at 184.169 kb on + strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.175 kb on + strand at 184.175 kb on + strand at 184.175 kb on + strand at 184.332 kb on + strand at 184.333 kb on - strand at 184.333 kb on - strand at 184.333 kb on - strand at 184.540 kb on - strand, within GFF169 at 184.821 kb on + strand, within GFF169 at 184.822 kb on - strand, within GFF169 at 185.128 kb on - strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.210 kb on - strand, within GFF169 at 185.210 kb on - strand, within GFF169 at 185.210 kb on - strand, within GFF169 at 185.210 kb on - strand, within GFF169 at 185.210 kb on - strand, within GFF169 at 185.210 kb on - strand, within GFF169 at 185.210 kb on - strand, within GFF169
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 181,557 - -0.2 181,644 + +0.4 181,644 + -0.3 181,645 - +0.2 181,687 - +1.0 181,687 - -0.6 182,053 + GFF167 0.57 -0.7 182,054 - GFF167 0.57 +0.6 182,171 - GFF167 0.79 -0.2 182,561 + GFF168 0.12 -0.8 182,561 + GFF168 0.12 +0.0 182,562 - GFF168 0.12 -0.1 182,562 - GFF168 0.12 +0.4 182,954 + GFF168 0.32 -0.9 182,954 + GFF168 0.32 +0.1 182,955 - GFF168 0.32 +1.0 182,987 + GFF168 0.33 +1.1 183,104 + GFF168 0.39 +0.0 183,104 + GFF168 0.39 -1.3 183,150 - GFF168 0.41 -0.4 183,335 + GFF168 0.51 +0.0 183,335 + GFF168 0.51 -0.5 183,336 - GFF168 0.51 +0.5 183,336 - GFF168 0.51 +0.5 183,521 + GFF168 0.60 -1.2 183,521 + GFF168 0.60 -0.6 183,521 + GFF168 0.60 -0.6 183,522 - GFF168 0.60 -0.1 183,525 - GFF168 0.60 -0.3 183,563 + GFF168 0.62 -0.2 183,989 + GFF168 0.83 -0.2 183,989 + GFF168 0.83 +0.4 184,169 + +0.0 184,169 + +0.3 184,169 + -0.1 184,170 - -0.1 184,170 - -0.6 184,170 - -0.5 184,170 - -0.1 184,170 - -0.3 184,170 - -0.1 184,170 - -1.2 184,170 - +0.3 184,170 - +0.2 184,170 - +1.2 184,175 + -1.2 184,175 + -0.9 184,175 + -0.2 184,332 + -1.2 184,333 - +0.4 184,333 - -0.6 184,333 - +0.2 184,540 - GFF169 0.13 +0.2 184,821 + GFF169 0.38 +0.3 184,822 - GFF169 0.38 -0.1 185,128 - GFF169 0.65 -0.3 185,209 + GFF169 0.73 -0.7 185,209 + GFF169 0.73 +1.0 185,209 + GFF169 0.73 -0.6 185,209 + GFF169 0.73 +0.4 185,209 + GFF169 0.73 -0.5 185,209 + GFF169 0.73 -1.0 185,209 + GFF169 0.73 +0.4 185,209 + GFF169 0.73 -0.9 185,209 + GFF169 0.73 -0.7 185,209 + GFF169 0.73 +0.5 185,210 - GFF169 0.73 +0.6 185,210 - GFF169 0.73 +0.6 185,210 - GFF169 0.73 +0.4 185,210 - GFF169 0.73 +0.9 185,210 - GFF169 0.73 +0.4 185,210 - GFF169 0.73 +0.8 185,210 - GFF169 0.73 +0.3
Or see this region's nucleotide sequence