Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1504 and GFF1505 are separated by 8 nucleotides GFF1505 and GFF1506 are separated by 81 nucleotides GFF1506 and GFF1507 are separated by 65 nucleotides
GFF1504 - Cardiolipin synthetase (EC 2.7.8.-), at 354,849 to 356,234
GFF1504
GFF1505 - putative exported protein, at 356,243 to 356,683
GFF1505
GFF1506 - hypothetical protein, at 356,765 to 357,196
GFF1506
GFF1507 - Esterase/lipase, at 357,262 to 358,188
GFF1507
Position (kb) 356
357 Strain fitness (log2 ratio) -2
-1
0
1 at 355.471 kb on - strand, within GFF1504 at 355.662 kb on + strand, within GFF1504 at 355.663 kb on - strand, within GFF1504 at 355.728 kb on + strand, within GFF1504 at 355.728 kb on + strand, within GFF1504 at 355.728 kb on + strand, within GFF1504 at 355.729 kb on - strand, within GFF1504 at 355.729 kb on - strand, within GFF1504 at 355.729 kb on - strand, within GFF1504 at 355.729 kb on - strand, within GFF1504 at 355.741 kb on - strand, within GFF1504 at 355.741 kb on - strand, within GFF1504 at 355.786 kb on - strand, within GFF1504 at 355.801 kb on - strand, within GFF1504 at 355.801 kb on - strand, within GFF1504 at 355.924 kb on - strand, within GFF1504 at 355.924 kb on - strand, within GFF1504 at 355.924 kb on - strand, within GFF1504 at 355.926 kb on + strand, within GFF1504 at 355.927 kb on - strand, within GFF1504 at 355.927 kb on - strand, within GFF1504 at 355.959 kb on + strand, within GFF1504 at 355.959 kb on + strand, within GFF1504 at 355.960 kb on - strand, within GFF1504 at 356.223 kb on + strand at 356.224 kb on - strand at 356.224 kb on - strand at 356.224 kb on - strand at 356.224 kb on - strand at 356.224 kb on - strand at 356.568 kb on + strand, within GFF1505 at 356.669 kb on + strand at 356.669 kb on + strand at 356.670 kb on - strand at 356.670 kb on - strand at 356.710 kb on + strand at 356.710 kb on + strand at 356.710 kb on + strand at 356.710 kb on + strand at 356.711 kb on - strand at 356.711 kb on - strand at 356.711 kb on - strand at 356.711 kb on - strand at 356.711 kb on - strand at 356.735 kb on + strand at 356.736 kb on - strand at 356.832 kb on + strand, within GFF1506 at 356.832 kb on + strand, within GFF1506 at 356.832 kb on + strand, within GFF1506 at 356.833 kb on - strand, within GFF1506 at 356.833 kb on - strand, within GFF1506 at 356.964 kb on + strand, within GFF1506 at 356.965 kb on - strand, within GFF1506 at 357.232 kb on + strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.233 kb on - strand at 357.233 kb on - strand at 357.363 kb on + strand, within GFF1507 at 357.463 kb on + strand, within GFF1507 at 357.464 kb on - strand, within GFF1507 at 357.464 kb on - strand, within GFF1507 at 357.500 kb on - strand, within GFF1507
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 355,471 - GFF1504 0.45 -0.1 355,662 + GFF1504 0.59 +0.3 355,663 - GFF1504 0.59 +0.1 355,728 + GFF1504 0.63 -0.4 355,728 + GFF1504 0.63 +0.4 355,728 + GFF1504 0.63 +1.6 355,729 - GFF1504 0.63 -0.6 355,729 - GFF1504 0.63 -0.1 355,729 - GFF1504 0.63 -0.3 355,729 - GFF1504 0.63 -0.2 355,741 - GFF1504 0.64 +0.2 355,741 - GFF1504 0.64 +0.6 355,786 - GFF1504 0.68 -0.3 355,801 - GFF1504 0.69 +0.4 355,801 - GFF1504 0.69 -0.3 355,924 - GFF1504 0.78 -0.0 355,924 - GFF1504 0.78 -1.7 355,924 - GFF1504 0.78 -0.5 355,926 + GFF1504 0.78 +0.1 355,927 - GFF1504 0.78 +0.1 355,927 - GFF1504 0.78 +0.0 355,959 + GFF1504 0.80 -1.2 355,959 + GFF1504 0.80 +0.1 355,960 - GFF1504 0.80 -0.1 356,223 + +0.4 356,224 - -2.1 356,224 - -0.9 356,224 - +0.0 356,224 - +0.2 356,224 - -0.6 356,568 + GFF1505 0.74 -0.6 356,669 + -0.1 356,669 + +0.3 356,670 - -0.3 356,670 - -0.1 356,710 + +0.7 356,710 + +0.1 356,710 + +0.4 356,710 + -0.2 356,711 - +0.4 356,711 - -0.2 356,711 - -0.2 356,711 - -0.7 356,711 - -0.1 356,735 + +0.0 356,736 - -0.3 356,832 + GFF1506 0.16 +0.0 356,832 + GFF1506 0.16 +0.1 356,832 + GFF1506 0.16 +0.4 356,833 - GFF1506 0.16 +1.1 356,833 - GFF1506 0.16 +0.5 356,964 + GFF1506 0.46 -0.2 356,965 - GFF1506 0.46 +0.3 357,232 + -0.5 357,232 + -0.7 357,232 + +0.0 357,232 + +0.2 357,232 + -0.4 357,233 - -0.8 357,233 - +0.0 357,363 + GFF1507 0.11 -0.1 357,463 + GFF1507 0.22 +1.7 357,464 - GFF1507 0.22 -0.4 357,464 - GFF1507 0.22 -0.6 357,500 - GFF1507 0.26 +0.1
Or see this region's nucleotide sequence