Experiment: Ying_sugar7 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1477 and GFF1478 overlap by 14 nucleotides GFF1478 and GFF1479 are separated by 11 nucleotides GFF1479 and GFF1480 are separated by 4 nucleotides GFF1480 and GFF1481 are separated by 142 nucleotides
GFF1477 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 327,637 to 328,497
GFF1477
GFF1478 - Chemotaxis protein CheD, at 328,484 to 329,140
GFF1478
GFF1479 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 329,152 to 330,252
GFF1479
GFF1480 - hypothetical protein, at 330,257 to 330,970
GFF1480
GFF1481 - blr2406; hypothetical protein, at 331,113 to 331,610
GFF1481
Position (kb) 329
330
331 Strain fitness (log2 ratio) -1
0
1 at 328.345 kb on + strand, within GFF1477 at 328.346 kb on - strand, within GFF1477 at 328.346 kb on - strand, within GFF1477 at 328.483 kb on + strand at 328.483 kb on + strand at 328.484 kb on - strand at 328.484 kb on - strand at 328.484 kb on - strand at 328.587 kb on - strand, within GFF1478 at 328.587 kb on - strand, within GFF1478 at 328.638 kb on - strand, within GFF1478 at 328.638 kb on - strand, within GFF1478 at 328.638 kb on - strand, within GFF1478 at 328.640 kb on + strand, within GFF1478 at 328.641 kb on - strand, within GFF1478 at 328.787 kb on + strand, within GFF1478 at 328.935 kb on - strand, within GFF1478 at 329.003 kb on + strand, within GFF1478 at 329.138 kb on + strand at 329.138 kb on + strand at 329.869 kb on + strand, within GFF1479 at 329.869 kb on + strand, within GFF1479 at 329.869 kb on + strand, within GFF1479 at 329.869 kb on + strand, within GFF1479 at 329.920 kb on + strand, within GFF1479 at 329.920 kb on + strand, within GFF1479 at 329.920 kb on + strand, within GFF1479 at 329.920 kb on + strand, within GFF1479 at 330.091 kb on + strand, within GFF1479 at 330.091 kb on - strand, within GFF1479 at 330.092 kb on - strand, within GFF1479 at 330.092 kb on - strand, within GFF1479 at 330.092 kb on - strand, within GFF1479
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1 remove 328,345 + GFF1477 0.82 -1.0 328,346 - GFF1477 0.82 +0.1 328,346 - GFF1477 0.82 -1.2 328,483 + -0.1 328,483 + -1.3 328,484 - +0.4 328,484 - -0.4 328,484 - -0.0 328,587 - GFF1478 0.16 -0.3 328,587 - GFF1478 0.16 -0.0 328,638 - GFF1478 0.23 -0.2 328,638 - GFF1478 0.23 -0.0 328,638 - GFF1478 0.23 +0.0 328,640 + GFF1478 0.24 -0.7 328,641 - GFF1478 0.24 +0.3 328,787 + GFF1478 0.46 +0.1 328,935 - GFF1478 0.69 +0.4 329,003 + GFF1478 0.79 +0.1 329,138 + -1.2 329,138 + +1.1 329,869 + GFF1479 0.65 -0.6 329,869 + GFF1479 0.65 -0.2 329,869 + GFF1479 0.65 +1.4 329,869 + GFF1479 0.65 -0.4 329,920 + GFF1479 0.70 -0.3 329,920 + GFF1479 0.70 +0.0 329,920 + GFF1479 0.70 -0.1 329,920 + GFF1479 0.70 -0.0 330,091 + GFF1479 0.85 -0.2 330,091 - GFF1479 0.85 +0.1 330,092 - GFF1479 0.85 -0.8 330,092 - GFF1479 0.85 -0.5 330,092 - GFF1479 0.85 +0.9
Or see this region's nucleotide sequence