Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1379

Experiment: Ying_sugar7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1377 and GFF1378 are separated by 21 nucleotidesGFF1378 and GFF1379 are separated by 222 nucleotidesGFF1379 and GFF1380 are separated by 8 nucleotides GFF1377 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 233,462 to 234,004 GFF1377 GFF1378 - OsmC/Ohr family protein, at 234,026 to 234,475 GFF1378 GFF1379 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 234,698 to 236,302 GFF1379 GFF1380 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 236,311 to 237,408 GFF1380 Position (kb) 234 235 236 237Strain fitness (log2 ratio) -3 -2 -1 0 1at 234.096 kb on + strand, within GFF1378at 234.096 kb on + strand, within GFF1378at 234.096 kb on + strand, within GFF1378at 234.096 kb on + strand, within GFF1378at 234.096 kb on + strand, within GFF1378at 234.097 kb on + strand, within GFF1378at 234.097 kb on - strand, within GFF1378at 234.097 kb on - strand, within GFF1378at 234.282 kb on + strand, within GFF1378at 234.283 kb on - strand, within GFF1378at 234.283 kb on - strand, within GFF1378at 234.461 kb on - strandat 234.497 kb on + strandat 234.497 kb on + strandat 234.497 kb on + strandat 234.507 kb on + strandat 234.508 kb on - strandat 234.508 kb on - strandat 234.524 kb on + strandat 234.575 kb on + strandat 234.575 kb on + strandat 234.575 kb on + strandat 234.575 kb on + strandat 234.576 kb on - strandat 234.592 kb on - strandat 234.595 kb on + strandat 234.595 kb on + strandat 234.595 kb on + strandat 234.595 kb on + strandat 234.676 kb on - strandat 234.676 kb on - strandat 234.676 kb on - strandat 234.676 kb on - strandat 234.773 kb on + strandat 234.774 kb on - strandat 234.774 kb on - strandat 234.803 kb on + strandat 234.804 kb on - strandat 234.927 kb on - strand, within GFF1379at 234.927 kb on - strand, within GFF1379at 234.927 kb on - strand, within GFF1379at 235.130 kb on + strand, within GFF1379at 235.130 kb on + strand, within GFF1379at 235.130 kb on + strand, within GFF1379at 235.131 kb on - strand, within GFF1379at 235.131 kb on - strand, within GFF1379at 235.143 kb on - strand, within GFF1379at 235.337 kb on + strand, within GFF1379at 235.337 kb on + strand, within GFF1379at 235.337 kb on + strand, within GFF1379at 235.337 kb on + strand, within GFF1379at 235.337 kb on + strand, within GFF1379at 235.337 kb on + strand, within GFF1379at 235.338 kb on - strand, within GFF1379at 235.338 kb on - strand, within GFF1379at 235.338 kb on - strand, within GFF1379at 235.338 kb on - strand, within GFF1379at 235.338 kb on - strand, within GFF1379at 235.338 kb on - strand, within GFF1379at 235.527 kb on - strand, within GFF1379at 235.527 kb on - strand, within GFF1379at 235.527 kb on - strand, within GFF1379at 235.638 kb on - strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.670 kb on + strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.671 kb on - strand, within GFF1379at 235.862 kb on + strand, within GFF1379at 235.862 kb on + strand, within GFF1379at 235.862 kb on + strand, within GFF1379at 235.862 kb on + strand, within GFF1379at 235.863 kb on - strand, within GFF1379at 235.863 kb on - strand, within GFF1379at 235.863 kb on - strand, within GFF1379at 235.863 kb on - strand, within GFF1379at 236.252 kb on + strandat 236.252 kb on + strandat 236.252 kb on + strandat 236.252 kb on + strandat 236.252 kb on + strandat 236.253 kb on - strandat 236.253 kb on - strandat 236.253 kb on - strandat 236.253 kb on - strandat 236.279 kb on + strandat 236.280 kb on - strandat 236.598 kb on + strand, within GFF1380at 236.599 kb on - strand, within GFF1380at 237.187 kb on + strand, within GFF1380at 237.188 kb on - strand, within GFF1380at 237.244 kb on + strand, within GFF1380at 237.244 kb on + strand, within GFF1380at 237.245 kb on - strand, within GFF1380at 237.245 kb on - strand, within GFF1380at 237.245 kb on - strand, within GFF1380at 237.245 kb on - strand, within GFF1380

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1
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234,096 + GFF1378 0.16 -0.8
234,096 + GFF1378 0.16 +0.8
234,096 + GFF1378 0.16 -2.2
234,096 + GFF1378 0.16 +0.7
234,096 + GFF1378 0.16 -0.1
234,097 + GFF1378 0.16 +0.6
234,097 - GFF1378 0.16 -0.0
234,097 - GFF1378 0.16 +0.4
234,282 + GFF1378 0.57 +0.2
234,283 - GFF1378 0.57 +0.5
234,283 - GFF1378 0.57 +0.2
234,461 - +0.7
234,497 + -0.2
234,497 + +0.2
234,497 + -1.9
234,507 + -1.6
234,508 - +0.5
234,508 - +0.7
234,524 + +0.5
234,575 + +0.9
234,575 + -0.3
234,575 + +0.6
234,575 + -0.1
234,576 - +0.5
234,592 - +0.2
234,595 + +0.5
234,595 + +0.8
234,595 + +0.5
234,595 + +0.2
234,676 - +0.2
234,676 - +0.2
234,676 - -0.9
234,676 - -0.6
234,773 + -2.3
234,774 - -1.2
234,774 - -1.2
234,803 + -1.7
234,804 - -2.0
234,927 - GFF1379 0.14 -2.2
234,927 - GFF1379 0.14 -1.8
234,927 - GFF1379 0.14 +0.6
235,130 + GFF1379 0.27 -1.4
235,130 + GFF1379 0.27 -2.7
235,130 + GFF1379 0.27 -1.9
235,131 - GFF1379 0.27 -2.0
235,131 - GFF1379 0.27 +1.4
235,143 - GFF1379 0.28 -1.3
235,337 + GFF1379 0.40 -0.6
235,337 + GFF1379 0.40 -2.3
235,337 + GFF1379 0.40 -1.8
235,337 + GFF1379 0.40 -2.8
235,337 + GFF1379 0.40 -0.2
235,337 + GFF1379 0.40 -1.3
235,338 - GFF1379 0.40 -3.0
235,338 - GFF1379 0.40 -2.8
235,338 - GFF1379 0.40 -1.8
235,338 - GFF1379 0.40 -2.1
235,338 - GFF1379 0.40 -1.1
235,338 - GFF1379 0.40 -0.9
235,527 - GFF1379 0.52 -3.1
235,527 - GFF1379 0.52 +0.8
235,527 - GFF1379 0.52 -1.7
235,638 - GFF1379 0.59 -1.3
235,670 + GFF1379 0.61 -0.5
235,670 + GFF1379 0.61 -1.3
235,670 + GFF1379 0.61 -2.0
235,670 + GFF1379 0.61 -0.3
235,670 + GFF1379 0.61 +0.1
235,670 + GFF1379 0.61 -0.6
235,670 + GFF1379 0.61 -1.7
235,670 + GFF1379 0.61 -1.4
235,670 + GFF1379 0.61 -0.9
235,671 - GFF1379 0.61 -2.0
235,671 - GFF1379 0.61 -2.5
235,671 - GFF1379 0.61 -2.4
235,671 - GFF1379 0.61 -3.1
235,671 - GFF1379 0.61 -0.4
235,671 - GFF1379 0.61 -1.4
235,671 - GFF1379 0.61 -1.4
235,671 - GFF1379 0.61 -1.6
235,671 - GFF1379 0.61 -1.2
235,671 - GFF1379 0.61 -1.2
235,671 - GFF1379 0.61 -1.2
235,862 + GFF1379 0.73 -1.3
235,862 + GFF1379 0.73 -2.0
235,862 + GFF1379 0.73 -1.4
235,862 + GFF1379 0.73 -1.3
235,863 - GFF1379 0.73 -2.0
235,863 - GFF1379 0.73 -2.5
235,863 - GFF1379 0.73 -1.9
235,863 - GFF1379 0.73 -2.4
236,252 + -0.8
236,252 + -1.9
236,252 + -0.7
236,252 + -2.0
236,252 + -2.6
236,253 - -1.6
236,253 - -2.6
236,253 - -2.2
236,253 - -1.4
236,279 + -1.5
236,280 - -2.3
236,598 + GFF1380 0.26 +0.5
236,599 - GFF1380 0.26 +0.4
237,187 + GFF1380 0.80 -0.2
237,188 - GFF1380 0.80 -0.3
237,244 + GFF1380 0.85 +0.6
237,244 + GFF1380 0.85 -0.3
237,245 - GFF1380 0.85 +0.1
237,245 - GFF1380 0.85 -0.3
237,245 - GFF1380 0.85 -0.8
237,245 - GFF1380 0.85 -1.0

Or see this region's nucleotide sequence