Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1104

Experiment: Ying_sugar7 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1103 and GFF1104 are separated by 420 nucleotidesGFF1104 and GFF1105 are separated by 295 nucleotidesGFF1105 and GFF1106 are separated by 11 nucleotides GFF1103 - Outer membrane protein (porin), at 28,433 to 29,422 GFF1103 GFF1104 - hypothetical protein, at 29,843 to 31,390 GFF1104 GFF1105 - hypothetical protein, at 31,686 to 31,802 GFF1105 GFF1106 - Heavy metal sensor histidine kinase, at 31,814 to 32,551 GFF1106 Position (kb) 29 30 31 32Strain fitness (log2 ratio) -1 0 1 2at 29.010 kb on + strand, within GFF1103at 29.010 kb on + strand, within GFF1103at 29.014 kb on - strand, within GFF1103at 29.061 kb on + strand, within GFF1103at 29.061 kb on + strand, within GFF1103at 29.062 kb on - strand, within GFF1103at 29.135 kb on + strand, within GFF1103at 29.136 kb on - strand, within GFF1103at 29.136 kb on - strand, within GFF1103at 29.337 kb on + strandat 29.337 kb on + strandat 29.338 kb on - strandat 29.435 kb on - strandat 29.435 kb on - strandat 29.442 kb on + strandat 29.442 kb on + strandat 29.443 kb on - strandat 29.459 kb on + strandat 29.460 kb on - strandat 29.563 kb on - strandat 29.563 kb on - strandat 29.572 kb on + strandat 29.573 kb on - strandat 29.902 kb on - strandat 29.921 kb on + strandat 29.922 kb on - strandat 29.952 kb on - strandat 29.961 kb on + strandat 29.972 kb on + strandat 29.972 kb on + strandat 29.972 kb on + strandat 29.973 kb on - strandat 29.976 kb on + strandat 30.220 kb on - strand, within GFF1104at 30.227 kb on + strand, within GFF1104at 30.227 kb on + strand, within GFF1104at 30.228 kb on - strand, within GFF1104at 30.482 kb on - strand, within GFF1104at 30.482 kb on - strand, within GFF1104at 30.489 kb on + strand, within GFF1104at 30.489 kb on + strand, within GFF1104at 30.490 kb on - strand, within GFF1104at 30.490 kb on - strand, within GFF1104at 30.567 kb on + strand, within GFF1104at 30.636 kb on + strand, within GFF1104at 30.637 kb on - strand, within GFF1104at 30.942 kb on + strand, within GFF1104at 30.942 kb on + strand, within GFF1104at 31.080 kb on + strand, within GFF1104at 31.164 kb on + strand, within GFF1104at 31.307 kb on - strandat 31.356 kb on + strandat 31.413 kb on + strandat 31.447 kb on - strandat 31.450 kb on + strandat 31.456 kb on - strandat 31.517 kb on + strandat 31.559 kb on + strandat 31.635 kb on + strandat 31.635 kb on + strandat 31.636 kb on - strandat 31.636 kb on - strandat 31.637 kb on + strandat 31.638 kb on - strandat 31.638 kb on - strandat 31.638 kb on - strandat 31.639 kb on + strandat 31.680 kb on - strandat 31.680 kb on - strandat 31.690 kb on - strandat 31.771 kb on - strand, within GFF1105at 31.816 kb on - strandat 31.934 kb on + strand, within GFF1106at 31.958 kb on + strand, within GFF1106at 31.979 kb on + strand, within GFF1106at 31.980 kb on - strand, within GFF1106at 31.980 kb on - strand, within GFF1106at 31.980 kb on - strand, within GFF1106at 32.107 kb on - strand, within GFF1106at 32.107 kb on - strand, within GFF1106at 32.227 kb on - strand, within GFF1106at 32.252 kb on + strand, within GFF1106at 32.253 kb on - strand, within GFF1106at 32.253 kb on - strand, within GFF1106

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1
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29,010 + GFF1103 0.58 +0.1
29,010 + GFF1103 0.58 -0.4
29,014 - GFF1103 0.59 -0.7
29,061 + GFF1103 0.63 +0.1
29,061 + GFF1103 0.63 +0.3
29,062 - GFF1103 0.64 +1.0
29,135 + GFF1103 0.71 -0.4
29,136 - GFF1103 0.71 -0.2
29,136 - GFF1103 0.71 -0.2
29,337 + -0.8
29,337 + -0.7
29,338 - +0.5
29,435 - -0.1
29,435 - +0.5
29,442 + -0.6
29,442 + -1.3
29,443 - -0.7
29,459 + +0.2
29,460 - +0.2
29,563 - +0.2
29,563 - +0.1
29,572 + -0.4
29,573 - -0.2
29,902 - +0.2
29,921 + +0.5
29,922 - +0.6
29,952 - +0.2
29,961 + +0.6
29,972 + -0.3
29,972 + -0.2
29,972 + +1.7
29,973 - -0.2
29,976 + -0.3
30,220 - GFF1104 0.24 -0.2
30,227 + GFF1104 0.25 +0.1
30,227 + GFF1104 0.25 +0.1
30,228 - GFF1104 0.25 +0.1
30,482 - GFF1104 0.41 -0.4
30,482 - GFF1104 0.41 +0.4
30,489 + GFF1104 0.42 -0.2
30,489 + GFF1104 0.42 +0.6
30,490 - GFF1104 0.42 +0.1
30,490 - GFF1104 0.42 +0.5
30,567 + GFF1104 0.47 +0.7
30,636 + GFF1104 0.51 -0.6
30,637 - GFF1104 0.51 +0.0
30,942 + GFF1104 0.71 -0.2
30,942 + GFF1104 0.71 +0.6
31,080 + GFF1104 0.80 -0.1
31,164 + GFF1104 0.85 +0.5
31,307 - -0.7
31,356 + -0.3
31,413 + -1.4
31,447 - -0.4
31,450 + +0.0
31,456 - +0.2
31,517 + -0.6
31,559 + -0.1
31,635 + +0.5
31,635 + +0.4
31,636 - -0.1
31,636 - -0.6
31,637 + -0.4
31,638 - -0.9
31,638 - -0.5
31,638 - -0.4
31,639 + -0.1
31,680 - +2.1
31,680 - -0.4
31,690 - -0.2
31,771 - GFF1105 0.73 -0.7
31,816 - -0.4
31,934 + GFF1106 0.16 -0.3
31,958 + GFF1106 0.20 +0.6
31,979 + GFF1106 0.22 -0.1
31,980 - GFF1106 0.22 +0.4
31,980 - GFF1106 0.22 -0.0
31,980 - GFF1106 0.22 -0.2
32,107 - GFF1106 0.40 +1.2
32,107 - GFF1106 0.40 -1.2
32,227 - GFF1106 0.56 +0.3
32,252 + GFF1106 0.59 +0.2
32,253 - GFF1106 0.59 +0.0
32,253 - GFF1106 0.59 +0.1

Or see this region's nucleotide sequence