Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF11

Experiment: Ying_sugar7 rep B; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF10 and GFF11 are separated by 36 nucleotidesGFF11 and GFF12 are separated by 7 nucleotidesGFF12 and GFF13 are separated by 32 nucleotides GFF10 - N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47), at 7,309 to 8,517 GFF10 GFF11 - Acetolactate synthase large subunit (EC 2.2.1.6), at 8,554 to 9,618 GFF11 GFF12 - Acetolactate synthase large subunit (EC 2.2.1.6), at 9,626 to 10,285 GFF12 GFF13 - Aldehyde dehydrogenase (EC 1.2.1.3), at 10,318 to 10,647 GFF13 Position (kb) 8 9 10Strain fitness (log2 ratio) -1 0 1at 7.615 kb on + strand, within GFF10at 7.828 kb on + strand, within GFF10at 8.201 kb on - strand, within GFF10at 8.224 kb on + strand, within GFF10at 8.225 kb on - strand, within GFF10at 8.443 kb on + strandat 8.507 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 1
remove
7,615 + GFF10 0.25 -0.0
7,828 + GFF10 0.43 -0.3
8,201 - GFF10 0.74 +0.1
8,224 + GFF10 0.76 +0.7
8,225 - GFF10 0.76 +1.4
8,443 + -0.1
8,507 - +0.9

Or see this region's nucleotide sequence