Strain Fitness in Escherichia fergusonii Becca around EFB2_01155

Experiment: BHIS_CaCl2 no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control
1,212,563	+		EFB2_01154	0.47	-0.1
1,212,563	+		EFB2_01154	0.47	-0.3
1,212,590	+		EFB2_01154	0.48	-0.2
1,212,590	+		EFB2_01154	0.48	-0.1
1,212,590	+		EFB2_01154	0.48	-0.8
1,212,591	-		EFB2_01154	0.48	-1.5
1,212,607	+		EFB2_01154	0.49	+0.6
1,212,607	+		EFB2_01154	0.49	+0.1
1,212,607	+		EFB2_01154	0.49	-0.0
1,212,607	+		EFB2_01154	0.49	+1.0
1,212,607	+		EFB2_01154	0.49	-0.5
1,212,607	+		EFB2_01154	0.49	+0.3
1,212,607	+		EFB2_01154	0.49	-0.5
1,212,608	-		EFB2_01154	0.49	+1.0
1,212,608	-		EFB2_01154	0.49	-0.9
1,212,670	+		EFB2_01154	0.53	+0.2
1,212,671	-		EFB2_01154	0.53	-0.8
1,212,689	+		EFB2_01154	0.54	+0.1
1,212,689	+		EFB2_01154	0.54	+0.8
1,212,689	+		EFB2_01154	0.54	-2.4
1,212,689	+		EFB2_01154	0.54	-1.1
1,212,690	-		EFB2_01154	0.54	-0.0
1,212,690	-		EFB2_01154	0.54	-1.6
1,212,690	-		EFB2_01154	0.54	-2.1
1,212,690	-		EFB2_01154	0.54	+1.9
1,212,721	+		EFB2_01154	0.56	-0.2
1,212,721	+		EFB2_01154	0.56	-0.7
1,212,721	+		EFB2_01154	0.56	+1.8
1,212,721	+		EFB2_01154	0.56	-1.2
1,212,722	-		EFB2_01154	0.56	+0.9
1,212,722	-		EFB2_01154	0.56	-1.5
1,212,722	-		EFB2_01154	0.56	-1.3
1,212,773	+		EFB2_01154	0.59	+0.1
1,212,773	+		EFB2_01154	0.59	-0.5
1,212,799	+		EFB2_01154	0.60	+2.0
1,212,799	+		EFB2_01154	0.60	-3.1
1,212,800	-		EFB2_01154	0.60	-1.1
1,212,800	-		EFB2_01154	0.60	+0.4
1,212,800	-		EFB2_01154	0.60	+1.1
1,212,800	-		EFB2_01154	0.60	-1.1
1,212,800	-		EFB2_01154	0.60	+1.0
1,212,800	-		EFB2_01154	0.60	-0.6
1,212,826	+		EFB2_01154	0.62	-1.4
1,212,826	+		EFB2_01154	0.62	+0.7
1,212,827	-		EFB2_01154	0.62	+0.0
1,212,827	-		EFB2_01154	0.62	+0.3
1,212,827	-		EFB2_01154	0.62	+0.1
1,212,827	-		EFB2_01154	0.62	-0.6
1,212,872	+		EFB2_01154	0.65	-1.3
1,212,940	+		EFB2_01154	0.69	+0.4
1,212,941	-		EFB2_01154	0.69	+0.4
1,213,126	+		EFB2_01154	0.79	-1.1
1,213,146	+		EFB2_01154	0.81	+1.2
1,213,147	-		EFB2_01154	0.81	+0.8
1,213,147	-		EFB2_01154	0.81	+0.9
1,213,177	+		EFB2_01154	0.82	-1.0
1,213,178	-		EFB2_01154	0.82	-1.7
1,213,178	-		EFB2_01154	0.82	-0.2
1,213,178	-		EFB2_01154	0.82	-0.1
1,213,178	-		EFB2_01154	0.82	+1.6
1,213,191	+		EFB2_01154	0.83	+1.0
1,213,265	+		EFB2_01154	0.88	-0.4
1,213,266	-		EFB2_01154	0.88	+1.0
1,213,316	+				-0.6
1,213,316	+				-2.1
1,213,317	-				+1.2
1,213,317	-				+0.1
1,213,317	-				-0.1
1,213,317	-				+1.8
1,213,417	+				-0.1
1,213,417	+				-0.0
1,213,418	-				+0.3
1,213,476	-				+0.2
1,213,495	+				+0.6
1,213,495	+				+0.2
1,213,495	+				-0.4
1,213,496	-				+0.3
1,213,496	-				-0.5
1,213,496	-				+2.0
1,213,496	-				+0.1
1,213,496	-				-3.0
1,213,496	-				+1.4
1,213,504	+				+0.3
1,213,504	+				+1.0
1,213,504	+				-0.7
1,213,504	+				-0.2
1,213,504	+				+0.4
1,213,504	+				-0.5
1,213,504	+				+1.3
1,213,504	+				-1.4
1,213,505	-				+0.0
1,213,513	+				-0.1
1,213,513	+				-0.2
1,213,513	+				+0.8
1,213,513	+				+0.5
1,213,513	+				-1.2
1,213,513	+				-0.5
1,213,513	+				+0.3
1,213,513	+				-0.2
1,213,513	+				-0.3
1,213,513	+				-1.6
1,213,513	+				+0.1
1,213,513	+				+0.7
1,213,513	+				-0.8
1,213,514	-				-1.0
1,213,514	-				+0.9
1,213,514	-				+1.1
1,213,514	-				-2.9
1,213,514	-				-1.3
1,213,514	-				+0.2
1,213,514	-				-1.5
1,213,514	-				-1.6
1,213,514	-				-0.4
1,213,550	+				-0.8
1,213,550	+				-0.9
1,213,550	+				-0.7
1,213,550	+				-1.8
1,213,550	+				+1.8
1,213,550	+				-2.5
1,213,550	+				+0.6
1,213,550	+				+0.5
1,213,550	+				+0.1
1,213,550	+				+0.0
1,213,550	+				-1.0
1,213,550	+				+0.3
1,213,550	+				+0.3
1,213,550	+				+0.2
1,213,550	+				+0.0
1,213,550	+				-1.8
1,213,550	+				+1.2
1,213,550	+				+1.6
1,213,550	+				+1.6
1,213,550	+				+0.1
1,213,550	+				+0.1
1,213,550	+				+0.9
1,213,550	+				-2.4
1,213,550	+				+0.4
1,213,550	+				-0.7
1,213,550	+				-0.9
1,213,551	-				+0.4
1,213,551	-				+0.3
1,213,551	-				+2.4
1,213,551	-				+1.0
1,213,551	-				-1.1
1,213,551	-				+0.9
1,213,551	-				-1.1
1,213,567	+				-1.2
1,213,567	+				+0.7
1,213,567	+				+1.5
1,213,567	+				-0.7
1,213,567	+				+0.7
1,213,568	-				+0.0
1,213,623	-				+0.9
1,213,692	+		EFB2_01155	0.19	-1.3
1,213,692	+		EFB2_01155	0.19	+0.1
1,213,692	+		EFB2_01155	0.19	+0.3
1,213,692	+		EFB2_01155	0.19	-0.4
1,213,692	+		EFB2_01155	0.19	-2.0
1,213,692	+		EFB2_01155	0.19	-0.1
1,213,692	+		EFB2_01155	0.19	+0.4
1,213,692	+		EFB2_01155	0.19	+2.2
1,213,692	+		EFB2_01155	0.19	-1.2
1,213,693	-		EFB2_01155	0.19	-0.6
1,213,693	-		EFB2_01155	0.19	+1.1
1,213,693	-		EFB2_01155	0.19	+1.1
1,213,696	+		EFB2_01155	0.20	-1.3
1,213,696	+		EFB2_01155	0.20	-0.6
1,213,696	+		EFB2_01155	0.20	+0.9
1,213,696	+		EFB2_01155	0.20	-0.6
1,213,696	+		EFB2_01155	0.20	+0.4
1,213,696	+		EFB2_01155	0.20	-2.6
1,213,697	-		EFB2_01155	0.20	-0.9
1,213,697	-		EFB2_01155	0.20	-1.0
1,213,697	-		EFB2_01155	0.20	+0.4
1,213,697	-		EFB2_01155	0.20	+1.7
1,213,697	-		EFB2_01155	0.20	-1.0
1,213,697	-		EFB2_01155	0.20	-2.3
1,213,697	-		EFB2_01155	0.20	-1.3
1,213,697	-		EFB2_01155	0.20	+0.4
1,213,697	-		EFB2_01155	0.20	-1.3
1,213,697	-		EFB2_01155	0.20	+0.8
1,213,697	-		EFB2_01155	0.20	+0.8
1,213,697	-		EFB2_01155	0.20	+0.2
1,213,791	+		EFB2_01155	0.33	-0.0
1,213,792	-		EFB2_01155	0.33	-0.3
1,213,809	+		EFB2_01155	0.35	-0.3
1,213,817	+		EFB2_01155	0.36	+2.2
1,213,828	+		EFB2_01155	0.38	-0.4
1,213,861	-		EFB2_01155	0.42	+1.3
1,213,941	+		EFB2_01155	0.53	-1.6
1,213,942	-		EFB2_01155	0.53	-3.3
1,213,942	-		EFB2_01155	0.53	+0.4
1,213,942	-		EFB2_01155	0.53	+0.0
1,213,942	-		EFB2_01155	0.53	+2.0
1,214,051	-		EFB2_01155	0.68	-2.1
1,214,077	+		EFB2_01155	0.72	-0.3
1,214,077	+		EFB2_01155	0.72	+0.3
1,214,077	+		EFB2_01155	0.72	-0.6
1,214,078	-		EFB2_01155	0.72	-2.3
1,214,081	+		EFB2_01155	0.72	-0.6
1,214,081	+		EFB2_01155	0.72	+1.1
1,214,081	+		EFB2_01155	0.72	+0.6
1,214,082	-		EFB2_01155	0.72	+0.8
1,214,082	-		EFB2_01155	0.72	-0.8
1,214,117	+		EFB2_01155	0.77	+0.0
1,214,117	+		EFB2_01155	0.77	-0.9
1,214,117	+		EFB2_01155	0.77	+0.9
1,214,117	+		EFB2_01155	0.77	+0.0
1,214,117	+		EFB2_01155	0.77	+0.8
1,214,117	+		EFB2_01155	0.77	-0.1
1,214,117	+		EFB2_01155	0.77	+0.8
1,214,118	-		EFB2_01155	0.77	-0.8
1,214,118	-		EFB2_01155	0.77	+2.4
1,214,118	-		EFB2_01155	0.77	-1.0
1,214,118	-		EFB2_01155	0.77	+0.9
1,214,118	-		EFB2_01155	0.77	-0.6
1,214,121	+		EFB2_01155	0.78	+2.8
1,214,121	+		EFB2_01155	0.78	+1.4
1,214,127	+		EFB2_01155	0.78	-0.1
1,214,127	+		EFB2_01155	0.78	+0.4
1,214,127	+		EFB2_01155	0.78	+1.4
1,214,128	-		EFB2_01155	0.79	-1.6
1,214,128	-		EFB2_01155	0.79	-0.9
1,214,151	+		EFB2_01155	0.82	-2.5
1,214,151	+		EFB2_01155	0.82	+0.7
1,214,151	+		EFB2_01155	0.82	-0.3
1,214,151	+		EFB2_01155	0.82	+1.3
1,214,175	+		EFB2_01155	0.85	-0.1
1,214,175	+		EFB2_01155	0.85	+0.9
1,214,175	+		EFB2_01155	0.85	-1.3
1,214,175	+		EFB2_01155	0.85	-0.5
1,214,175	+		EFB2_01155	0.85	-0.1
1,214,175	+		EFB2_01155	0.85	-0.1
1,214,176	-		EFB2_01155	0.85	-3.0
1,214,179	+		EFB2_01155	0.85	+3.6
1,214,180	-		EFB2_01155	0.86	+0.6
1,214,180	-		EFB2_01155	0.86	+0.7
1,214,180	-		EFB2_01155	0.86	+0.4
1,214,198	+		EFB2_01155	0.88	-0.5
1,214,198	+		EFB2_01155	0.88	-0.2
1,214,198	+		EFB2_01155	0.88	+0.4
1,214,198	+		EFB2_01155	0.88	+1.2
1,214,198	+		EFB2_01155	0.88	+0.7
1,214,198	+		EFB2_01155	0.88	+0.5
1,214,198	+		EFB2_01155	0.88	+0.4
1,214,198	+		EFB2_01155	0.88	-2.3
1,214,198	+		EFB2_01155	0.88	+0.1
1,214,199	-		EFB2_01155	0.88	-1.6
1,214,199	-		EFB2_01155	0.88	-0.1
1,214,199	-		EFB2_01155	0.88	+0.7
1,214,199	-		EFB2_01155	0.88	-0.6
1,214,199	-		EFB2_01155	0.88	+0.0
1,214,199	-		EFB2_01155	0.88	-0.2
1,214,199	-		EFB2_01155	0.88	-0.7
1,214,199	-		EFB2_01155	0.88	+0.9
1,214,199	-		EFB2_01155	0.88	+1.9
1,214,199	-		EFB2_01155	0.88	+0.7
1,214,199	-		EFB2_01155	0.88	-1.2
1,214,199	-		EFB2_01155	0.88	-1.6
1,214,207	+		EFB2_01155	0.89	-1.0
1,214,207	+		EFB2_01155	0.89	-1.7
1,214,207	+		EFB2_01155	0.89	-1.4
1,214,273	-				-1.4
1,214,283	+				-0.7
1,214,283	+				-0.1
1,214,284	-				-0.5
1,214,287	+				+0.0
1,214,287	+				-0.4
1,214,287	+				-0.5
1,214,287	+				-2.1
1,214,288	-				-1.1
1,214,288	-				+0.0
1,214,288	-				-0.3
1,214,302	+				+0.7
1,214,361	+				-1.1
1,214,387	+				-0.1
1,214,387	+				-1.6
1,214,387	+				-0.7
1,214,387	+				-0.3
1,214,388	-				-0.0
1,214,394	+				-3.1
1,214,394	+				+0.5
1,214,394	+				-0.6
1,214,394	+				+0.0
1,214,394	+				+0.7
1,214,394	+				-0.6
1,214,395	-				-2.6
1,214,395	-				-1.7
1,214,395	-				+0.4
1,214,395	-				-1.0
1,214,395	-				-0.7
1,214,395	-				+0.5
1,214,395	-				-0.1
1,214,396	+				+0.1
1,214,396	+				-0.3
1,214,396	+				-0.0
1,214,396	+				-0.4
1,214,396	+				+0.9
1,214,396	+				+0.9
1,214,396	+				+1.0
1,214,396	+				+0.9
1,214,396	+				-0.6
1,214,396	+				+1.0
1,214,396	+				-0.6
1,214,396	+				+1.1
1,214,396	+				-0.6
1,214,396	+				-0.7
1,214,396	+				-0.0
1,214,396	+				+1.7
1,214,396	+				-0.3
1,214,396	+				-0.1
1,214,396	+				+1.9
1,214,396	+				+1.3
1,214,396	+				-1.1
1,214,396	+				-0.3
1,214,396	+				-2.4
1,214,396	+				+0.6
1,214,396	+				-1.6
1,214,396	+				-0.7
1,214,396	+				+1.0
1,214,396	+				+1.9
1,214,397	-				-2.0
1,214,397	-				+0.6
1,214,397	-				+1.3
1,214,397	-				-0.1
1,214,397	-				-0.6
1,214,397	-				+0.0
1,214,397	-				+0.7
1,214,397	-				+0.9
1,214,397	-				-0.4
1,214,397	-				+1.3
1,214,397	-				-1.2
1,214,397	-				+0.1
1,214,397	-				+0.2
1,214,397	-				-1.6
1,214,397	-				-0.4
1,214,397	-				+0.6
1,214,397	-				-1.1
1,214,397	-				-0.2
1,214,397	-				+0.2
1,214,397	-				+0.7
1,214,397	-				+0.8
1,214,397	-				+0.6
1,214,397	-				+0.7
1,214,397	-				+2.4
1,214,397	-				+0.4
1,214,397	-				-0.1
1,214,473	+				+0.5
1,214,473	+				+0.4
1,214,479	+				+0.5
1,214,479	+				-0.5
1,214,479	+				+0.4
1,214,479	+				-1.0
1,214,479	+				-1.3
1,214,480	-				+0.4
1,214,480	-				+0.3
1,214,480	-				+0.7
1,214,480	-				-0.7
1,214,506	+				+0.9
1,214,506	+				-0.3
1,214,506	+				+1.5
1,214,507	-				+0.1
1,214,507	-				-1.4
1,214,507	-				-0.4
1,214,507	-				-0.0
1,214,521	+				-2.5
1,214,521	+				+0.3
1,214,521	+				+0.3
1,214,521	+				-0.9
1,214,521	+				-0.9
1,214,521	+				+1.2
1,214,522	-				+0.2
1,214,522	-				+0.4
1,214,522	-				-0.1
1,214,522	-				+0.3
1,214,561	+				-1.0
1,214,561	+				+1.4
1,214,561	+				+0.7
1,214,562	-				+0.3
1,214,583	+		EFB2_01156	0.22	-0.7
1,214,583	+		EFB2_01156	0.22	-1.8
1,214,583	+		EFB2_01156	0.22	+0.2
1,214,583	+		EFB2_01156	0.22	-1.0
1,214,583	+		EFB2_01156	0.22	+1.1
1,214,584	-		EFB2_01156	0.23	-1.1
1,214,584	-		EFB2_01156	0.23	+0.7
1,214,593	+		EFB2_01156	0.29	-0.8
1,214,593	+		EFB2_01156	0.29	-0.1
1,214,593	+		EFB2_01156	0.29	+1.3
1,214,593	+		EFB2_01156	0.29	+1.2
1,214,593	+		EFB2_01156	0.29	+1.2
1,214,593	+		EFB2_01156	0.29	-0.3
1,214,593	+		EFB2_01156	0.29	+1.1
1,214,593	+		EFB2_01156	0.29	-2.1
1,214,593	+		EFB2_01156	0.29	+0.3
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1,214,594	-		EFB2_01156	0.29	-0.9
1,214,599	-		EFB2_01156	0.33	+0.3
1,214,620	-		EFB2_01156	0.46	-0.2
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1,214,660	-		EFB2_01156	0.73	-1.9
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1,214,668	+		EFB2_01156	0.78	-1.0
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1,214,699	+				-0.6
1,214,699	+				+0.8
1,214,700	-				+1.4
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1,214,700	-				+0.5
1,214,700	-				-2.6
1,214,700	-				+0.4
1,214,715	+				+0.7
1,214,728	-				+0.3
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1,214,767	+				-1.0
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