Strain Fitness in Escherichia fergusonii Becca around EFB2_01064

Experiment: BHIS_CaCl2 no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control
1,103,052	-		EFB2_01063	0.65	-0.9
1,103,052	-		EFB2_01063	0.65	-1.3
1,103,052	-		EFB2_01063	0.65	+1.4
1,103,091	+		EFB2_01063	0.66	-2.2
1,103,091	+		EFB2_01063	0.66	+0.9
1,103,091	+		EFB2_01063	0.66	-0.4
1,103,091	+		EFB2_01063	0.66	+1.2
1,103,092	-		EFB2_01063	0.66	-2.4
1,103,092	-		EFB2_01063	0.66	-0.6
1,103,092	-		EFB2_01063	0.66	-1.6
1,103,092	-		EFB2_01063	0.66	-0.0
1,103,093	+		EFB2_01063	0.67	+0.5
1,103,094	-		EFB2_01063	0.67	+0.1
1,103,144	+		EFB2_01063	0.68	-0.8
1,103,144	+		EFB2_01063	0.68	+0.3
1,103,144	+		EFB2_01063	0.68	+1.0
1,103,145	-		EFB2_01063	0.68	-3.0
1,103,145	-		EFB2_01063	0.68	-0.6
1,103,145	-		EFB2_01063	0.68	-0.6
1,103,175	+		EFB2_01063	0.69	-0.4
1,103,175	+		EFB2_01063	0.69	+1.2
1,103,175	+		EFB2_01063	0.69	+1.3
1,103,175	+		EFB2_01063	0.69	-0.4
1,103,175	+		EFB2_01063	0.69	+0.9
1,103,176	-		EFB2_01063	0.69	+0.6
1,103,176	-		EFB2_01063	0.69	+4.6
1,103,217	-		EFB2_01063	0.71	+0.6
1,103,239	-		EFB2_01063	0.72	-0.5
1,103,251	+		EFB2_01063	0.72	-1.1
1,103,264	+		EFB2_01063	0.72	-0.3
1,103,264	+		EFB2_01063	0.72	+0.9
1,103,276	+		EFB2_01063	0.73	+1.1
1,103,276	+		EFB2_01063	0.73	-1.6
1,103,276	+		EFB2_01063	0.73	+0.1
1,103,276	+		EFB2_01063	0.73	+1.0
1,103,276	+		EFB2_01063	0.73	-0.7
1,103,277	-		EFB2_01063	0.73	-0.8
1,103,277	-		EFB2_01063	0.73	-0.3
1,103,277	-		EFB2_01063	0.73	-0.8
1,103,277	-		EFB2_01063	0.73	+0.2
1,103,369	+		EFB2_01063	0.76	-0.4
1,103,370	-		EFB2_01063	0.76	-0.7
1,103,370	-		EFB2_01063	0.76	+0.1
1,103,370	-		EFB2_01063	0.76	+0.1
1,103,424	-		EFB2_01063	0.78	+0.7
1,103,452	+		EFB2_01063	0.79	-2.4
1,103,452	+		EFB2_01063	0.79	+1.6
1,103,453	-		EFB2_01063	0.79	+0.2
1,103,453	-		EFB2_01063	0.79	+0.9
1,103,458	+		EFB2_01063	0.79	-1.7
1,103,470	-		EFB2_01063	0.80	+0.5
1,103,478	+		EFB2_01063	0.80	+2.0
1,103,478	+		EFB2_01063	0.80	+0.2
1,103,478	+		EFB2_01063	0.80	-0.9
1,103,478	+		EFB2_01063	0.80	+0.6
1,103,478	+		EFB2_01063	0.80	-0.6
1,103,478	+		EFB2_01063	0.80	+2.0
1,103,478	+		EFB2_01063	0.80	-0.6
1,103,479	-		EFB2_01063	0.80	+0.2
1,103,479	-		EFB2_01063	0.80	+1.3
1,103,479	-		EFB2_01063	0.80	-0.4
1,103,479	-		EFB2_01063	0.80	-0.3
1,103,479	-		EFB2_01063	0.80	-0.6
1,103,493	+		EFB2_01063	0.80	+1.0
1,103,493	+		EFB2_01063	0.80	-0.1
1,103,493	+		EFB2_01063	0.80	+0.3
1,103,493	+		EFB2_01063	0.80	-1.2
1,103,493	+		EFB2_01063	0.80	+0.1
1,103,493	+		EFB2_01063	0.80	-0.7
1,103,493	+		EFB2_01063	0.80	+0.1
1,103,493	+		EFB2_01063	0.80	-0.2
1,103,493	+		EFB2_01063	0.80	-0.5
1,103,493	+		EFB2_01063	0.80	-0.1
1,103,493	+		EFB2_01063	0.80	-2.1
1,103,493	+		EFB2_01063	0.80	-0.9
1,103,493	+		EFB2_01063	0.80	+0.0
1,103,493	+		EFB2_01063	0.80	-0.3
1,103,493	+		EFB2_01063	0.80	+0.1
1,103,493	+		EFB2_01063	0.80	-0.4
1,103,493	+		EFB2_01063	0.80	-0.4
1,103,494	-		EFB2_01063	0.80	-1.8
1,103,494	-		EFB2_01063	0.80	+0.3
1,103,494	-		EFB2_01063	0.80	-0.4
1,103,494	-		EFB2_01063	0.80	+0.2
1,103,494	-		EFB2_01063	0.80	-0.6
1,103,495	+		EFB2_01063	0.80	-0.6
1,103,495	+		EFB2_01063	0.80	+0.5
1,103,495	+		EFB2_01063	0.80	-0.2
1,103,495	+		EFB2_01063	0.80	-0.4
1,103,495	+		EFB2_01063	0.80	-0.3
1,103,495	+		EFB2_01063	0.80	-0.6
1,103,495	+		EFB2_01063	0.80	-2.1
1,103,495	+		EFB2_01063	0.80	-2.1
1,103,495	+		EFB2_01063	0.80	-2.4
1,103,495	+		EFB2_01063	0.80	-0.9
1,103,495	+		EFB2_01063	0.80	+0.7
1,103,495	+		EFB2_01063	0.80	-4.2
1,103,495	+		EFB2_01063	0.80	-1.6
1,103,495	+		EFB2_01063	0.80	-0.1
1,103,495	+		EFB2_01063	0.80	-0.6
1,103,495	+		EFB2_01063	0.80	-1.8
1,103,495	+		EFB2_01063	0.80	-0.2
1,103,495	+		EFB2_01063	0.80	+0.0
1,103,495	+		EFB2_01063	0.80	-0.4
1,103,495	+		EFB2_01063	0.80	+1.0
1,103,495	+		EFB2_01063	0.80	+1.6
1,103,495	+		EFB2_01063	0.80	+0.8
1,103,496	-		EFB2_01063	0.80	-0.8
1,103,496	-		EFB2_01063	0.80	-1.6
1,103,496	-		EFB2_01063	0.80	-0.2
1,103,496	-		EFB2_01063	0.80	-0.8
1,103,496	-		EFB2_01063	0.80	-1.4
1,103,496	-		EFB2_01063	0.80	+0.2
1,103,496	-		EFB2_01063	0.80	+1.3
1,103,496	-		EFB2_01063	0.80	+0.4
1,103,496	-		EFB2_01063	0.80	+0.4
1,103,496	-		EFB2_01063	0.80	-1.3
1,103,496	-		EFB2_01063	0.80	-0.6
1,103,496	-		EFB2_01063	0.80	+0.1
1,103,496	-		EFB2_01063	0.80	-0.5
1,103,496	-		EFB2_01063	0.80	-0.6
1,103,496	-		EFB2_01063	0.80	-1.4
1,103,496	-		EFB2_01063	0.80	-0.6
1,103,496	-		EFB2_01063	0.80	-0.6
1,103,496	-		EFB2_01063	0.80	-0.0
1,103,496	-		EFB2_01063	0.80	+2.6
1,103,496	-		EFB2_01063	0.80	+0.7
1,103,496	-		EFB2_01063	0.80	-0.3
1,103,496	-		EFB2_01063	0.80	-0.8
1,103,496	-		EFB2_01063	0.80	+0.2
1,103,496	-		EFB2_01063	0.80	-1.7
1,103,496	-		EFB2_01063	0.80	+0.4
1,103,496	-		EFB2_01063	0.80	-0.6
1,103,496	-		EFB2_01063	0.80	-1.7
1,103,496	-		EFB2_01063	0.80	-0.3
1,103,496	-		EFB2_01063	0.80	+0.4
1,103,518	+		EFB2_01063	0.81	-0.0
1,103,518	+		EFB2_01063	0.81	-1.5
1,103,518	+		EFB2_01063	0.81	-0.5
1,103,519	-		EFB2_01063	0.81	+1.4
1,103,519	-		EFB2_01063	0.81	-0.1
1,103,519	-		EFB2_01063	0.81	-1.0
1,103,532	+		EFB2_01063	0.82	-1.9
1,103,532	+		EFB2_01063	0.82	+0.2
1,103,532	+		EFB2_01063	0.82	+0.1
1,103,532	+		EFB2_01063	0.82	+0.6
1,103,532	+		EFB2_01063	0.82	+0.2
1,103,532	+		EFB2_01063	0.82	+0.6
1,103,533	-		EFB2_01063	0.82	-1.0
1,103,533	-		EFB2_01063	0.82	-0.3
1,103,533	-		EFB2_01063	0.82	-0.2
1,103,565	+		EFB2_01063	0.83	-1.5
1,103,566	-		EFB2_01063	0.83	-0.1
1,103,566	-		EFB2_01063	0.83	+0.4
1,103,637	-		EFB2_01063	0.85	+2.5
1,103,664	+		EFB2_01063	0.86	-1.3
1,103,664	+		EFB2_01063	0.86	+1.5
1,103,664	+		EFB2_01063	0.86	-1.3
1,103,664	+		EFB2_01063	0.86	-0.3
1,103,664	+		EFB2_01063	0.86	+0.4
1,103,664	+		EFB2_01063	0.86	+0.2
1,103,664	+		EFB2_01063	0.86	+0.2
1,103,664	+		EFB2_01063	0.86	-0.5
1,103,664	+		EFB2_01063	0.86	-0.2
1,103,664	+		EFB2_01063	0.86	-0.0
1,103,664	+		EFB2_01063	0.86	+0.5
1,103,664	+		EFB2_01063	0.86	-0.4
1,103,665	-		EFB2_01063	0.86	+0.4
1,103,665	-		EFB2_01063	0.86	+1.2
1,103,665	-		EFB2_01063	0.86	+0.4
1,103,665	-		EFB2_01063	0.86	+1.1
1,103,744	-		EFB2_01063	0.89	+0.3
1,103,747	+		EFB2_01063	0.89	+0.7
1,103,747	+		EFB2_01063	0.89	+1.3
1,103,748	-		EFB2_01063	0.89	+0.2
1,103,748	-		EFB2_01063	0.89	+1.0
1,103,748	-		EFB2_01063	0.89	-2.7
1,103,748	-		EFB2_01063	0.89	-0.3
1,103,797	+				-2.0
1,103,797	+				+1.9
1,103,797	+				+0.1
1,103,797	+				+0.2
1,103,797	+				-1.4
1,103,798	-				+0.3
1,103,798	-				-0.9
1,103,801	+				-0.7
1,103,801	+				+1.1
1,103,801	+				-0.0
1,103,801	+				-0.9
1,103,801	+				-1.8
1,103,802	-				+0.9
1,103,802	-				-0.6
1,103,802	-				-0.7
1,103,802	-				+0.4
1,103,802	-				-2.9
1,103,802	-				-0.8
1,103,802	-				+0.6
1,103,822	+				+0.7
1,103,843	+				+0.2
1,103,861	-				+0.4
1,103,924	+				+1.2
1,103,924	+				-1.4
1,103,924	+				-1.2
1,103,924	+				+0.8
1,103,924	+				+1.2
1,103,924	+				-0.1
1,103,924	+				+1.3
1,103,924	+				+0.9
1,103,924	+				-0.9
1,103,924	+				+0.2
1,103,924	+				-0.7
1,103,924	+				+0.2
1,103,924	+				-0.3
1,103,924	+				+0.5
1,103,925	-				-1.4
1,103,925	-				-1.3
1,103,925	-				-1.8
1,103,925	-				-1.8
1,103,925	-				-1.3
1,103,925	-				-1.6
1,103,930	+				-0.5
1,103,931	-				-0.6
1,103,931	-				+0.0
1,103,973	+				-0.3
1,103,973	+				+0.4
1,103,973	+				+4.5
1,103,973	+				+0.6
1,103,973	+				+1.1
1,103,973	+				-1.3
1,103,974	-				-0.7
1,103,974	-				+0.5
1,103,974	-				-0.5
1,103,974	-				-0.4
1,103,974	-				-0.2
1,103,974	-				-2.5
1,104,074	+				+1.4
1,104,074	+				+1.5
1,104,074	+				-0.9
1,104,074	+				-1.9
1,104,074	+				-0.7
1,104,074	+				+1.0
1,104,074	+				-0.5
1,104,074	+				+0.2
1,104,075	-				+0.2
1,104,075	-				-1.8
1,104,075	-				+0.1
1,104,075	-				-1.4
1,104,075	-				-0.3
1,104,095	+				-0.8
1,104,160	+				-1.1
1,104,173	+				-0.8
1,104,173	+				+1.4
1,104,173	+				-0.3
1,104,340	+				-0.3
1,104,341	-				+1.0
1,104,433	-		EFB2_01064	0.11	-1.0
1,104,435	+		EFB2_01064	0.11	-0.3
1,104,435	+		EFB2_01064	0.11	-1.8
1,104,527	+		EFB2_01064	0.13	-0.5
1,104,528	-		EFB2_01064	0.13	-0.5
1,104,650	-		EFB2_01064	0.17	+1.0
1,104,932	+		EFB2_01064	0.25	+0.0
1,105,115	+		EFB2_01064	0.30	+2.0
1,105,307	+		EFB2_01064	0.35	+1.0
1,105,307	+		EFB2_01064	0.35	-0.5
1,105,307	+		EFB2_01064	0.35	-0.5
1,105,307	+		EFB2_01064	0.35	+0.0
1,105,307	+		EFB2_01064	0.35	+2.0
1,105,307	+		EFB2_01064	0.35	+2.0
1,105,307	+		EFB2_01064	0.35	+2.0
1,105,307	+		EFB2_01064	0.35	-0.3
1,105,308	-		EFB2_01064	0.35	-1.0
1,105,308	-		EFB2_01064	0.35	-0.5
1,105,309	+		EFB2_01064	0.35	-1.3
1,105,309	+		EFB2_01064	0.35	-0.8
1,105,309	+		EFB2_01064	0.35	-0.8
1,105,310	-		EFB2_01064	0.36	-1.1
1,105,310	-		EFB2_01064	0.36	+2.0
1,105,310	-		EFB2_01064	0.36	+1.6
1,105,339	+		EFB2_01064	0.36	-1.0
1,105,340	-		EFB2_01064	0.36	-1.3
1,105,341	+		EFB2_01064	0.36	+0.0
1,105,342	-		EFB2_01064	0.36	-0.3
1,105,342	-		EFB2_01064	0.36	+2.0
1,105,342	-		EFB2_01064	0.36	+0.5
1,105,373	-		EFB2_01064	0.37	+2.0
1,105,380	-		EFB2_01064	0.37	-1.1
1,105,417	-		EFB2_01064	0.39	+2.0
1,105,486	-		EFB2_01064	0.40	+2.0
1,105,511	+		EFB2_01064	0.41	-2.4
1,105,599	+		EFB2_01064	0.44	-0.8
1,105,613	+		EFB2_01064	0.44	-0.3
1,105,613	+		EFB2_01064	0.44	-2.3
1,105,614	-		EFB2_01064	0.44	+1.0
1,106,056	-		EFB2_01064	0.57	+0.5
1,106,247	+		EFB2_01064	0.62	+2.0
1,106,273	+		EFB2_01064	0.63	-1.3
1,106,274	-		EFB2_01064	0.63	-0.3
1,106,319	+		EFB2_01064	0.64	-1.0
1,106,319	+		EFB2_01064	0.64	-0.5
1,106,319	+		EFB2_01064	0.64	-0.8
1,106,391	+		EFB2_01064	0.66	-0.3
1,106,391	+		EFB2_01064	0.66	+1.0
1,106,643	+		EFB2_01064	0.73	+0.5
1,106,702	+		EFB2_01064	0.75	-0.3
1,106,702	+		EFB2_01064	0.75	+0.0
1,106,729	+		EFB2_01064	0.76	+0.5
1,106,729	+		EFB2_01064	0.76	-0.5
1,106,730	-		EFB2_01064	0.76	+0.5
1,107,121	+		EFB2_01064	0.87	+0.5
1,107,167	+		EFB2_01064	0.88	-1.0
1,107,224	+		EFB2_01064	0.90	-0.8
1,107,280	+				-0.3
1,107,294	+				-0.6
1,107,294	+				-1.1
1,107,294	+				+2.0
1,107,370	+				+2.0
1,107,391	+				-0.6
1,107,392	-				-0.6
1,107,393	+				+2.0
1,107,393	+				+1.0
1,107,393	+				-1.7
1,107,426	+				+0.0
1,107,466	-				-1.0
1,107,469	+				-1.1
1,107,492	+				+0.0
1,107,592	+				+0.7
1,107,613	+				+0.6
1,107,613	+				-2.0
1,107,613	+				-0.8
1,107,613	+				-1.9
1,107,614	-				-0.2
1,107,614	-				+0.6
1,107,614	-				-2.4
1,107,614	-				-0.4
1,107,614	-				+1.6
1,107,640	+				-0.5
1,107,640	+				-0.6
1,107,640	+				-0.8
1,107,641	-				+0.8
1,107,641	-				+0.7
1,107,715	+				-1.7
1,107,715	+				+0.3
1,107,715	+				-1.4
1,107,716	-				-1.2
1,107,716	-				-0.8
1,107,716	-				-0.9
1,107,716	-				-1.8
1,107,716	-				-0.6
1,107,716	-				-0.9
1,107,716	-				-0.1
1,107,716	-				-0.3
1,107,716	-				-0.3
1,107,718	+				+0.2
1,107,718	+				-1.3
1,107,718	+				-0.3
1,107,718	+				-1.9
1,107,718	+				-0.7
1,107,718	+				-1.2
1,107,718	+				+0.4
1,107,718	+				-0.6
1,107,718	+				+0.5
1,107,718	+				-3.9
1,107,718	+				-1.7
1,107,718	+				-1.8
1,107,718	+				+0.6
1,107,718	+				-1.8
1,107,718	+				-2.4
1,107,718	+				-1.8
1,107,718	+				+0.0
1,107,718	+				+3.0
1,107,718	+				+0.4
1,107,718	+				-2.7
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1,107,719	-				-1.5
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1,107,719	-				-1.0
1,107,719	-				-2.4
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1,107,719	-				+0.0
1,107,719	-				-1.0
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1,107,719	-				-1.6
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1,107,719	-				-2.1
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1,107,719	-				-0.4
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1,107,826	+		EFB2_01065	0.13	-1.7
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1,107,915	+		EFB2_01065	0.18	-0.6
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1,107,935	+		EFB2_01065	0.19	-1.1
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1,107,935	+		EFB2_01065	0.19	-0.3
1,107,936	-		EFB2_01065	0.19	-0.6
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1,108,000	+		EFB2_01065	0.22	-1.8
1,108,000	+		EFB2_01065	0.22	+0.3
1,108,000	+		EFB2_01065	0.22	-1.6
1,108,033	+		EFB2_01065	0.24	-1.0
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1,108,033	+		EFB2_01065	0.24	-2.1
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1,108,046	+		EFB2_01065	0.25	+1.0
1,108,047	-		EFB2_01065	0.25	-2.3
1,108,047	-		EFB2_01065	0.25	+0.2
1,108,121	+		EFB2_01065	0.29	-2.1
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1,108,156	+		EFB2_01065	0.31	-3.3
1,108,156	+		EFB2_01065	0.31	-1.8
1,108,156	+		EFB2_01065	0.31	-1.3
1,108,156	+		EFB2_01065	0.31	+0.6
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1,108,157	-		EFB2_01065	0.31	+0.7
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1,108,261	+		EFB2_01065	0.37	+0.4
1,108,262	-		EFB2_01065	0.37	+0.6
1,108,262	-		EFB2_01065	0.37	+0.3
1,108,262	-		EFB2_01065	0.37	+1.4
1,108,351	+		EFB2_01065	0.41	+0.2
1,108,351	+		EFB2_01065	0.41	-0.5
1,108,351	+		EFB2_01065	0.41	+0.7
1,108,351	+		EFB2_01065	0.41	-2.7
1,108,351	+		EFB2_01065	0.41	+0.4
1,108,351	+		EFB2_01065	0.41	+0.3
1,108,352	-		EFB2_01065	0.41	+2.0
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1,108,352	-		EFB2_01065	0.41	-1.2
1,108,396	+		EFB2_01065	0.44	+0.9
1,108,396	+		EFB2_01065	0.44	+0.4
1,108,396	+		EFB2_01065	0.44	-0.3
1,108,396	+		EFB2_01065	0.44	-0.1
1,108,396	+		EFB2_01065	0.44	-1.0
1,108,396	+		EFB2_01065	0.44	+0.7
1,108,396	+		EFB2_01065	0.44	+0.8
1,108,396	+		EFB2_01065	0.44	-0.2
1,108,396	+		EFB2_01065	0.44	-1.0
1,108,397	-		EFB2_01065	0.44	+1.4
1,108,424	+		EFB2_01065	0.45	+0.1
1,108,424	+		EFB2_01065	0.45	-2.7
1,108,424	+		EFB2_01065	0.45	-1.0
1,108,424	+		EFB2_01065	0.45	-0.4
1,108,424	+		EFB2_01065	0.45	+0.3
1,108,424	+		EFB2_01065	0.45	-1.4
1,108,424	+		EFB2_01065	0.45	-2.4
1,108,424	+		EFB2_01065	0.45	-0.4
1,108,425	-		EFB2_01065	0.45	+0.2
1,108,425	-		EFB2_01065	0.45	-0.1
1,108,425	-		EFB2_01065	0.45	-1.4
1,108,425	-		EFB2_01065	0.45	-0.1
1,108,425	-		EFB2_01065	0.45	-0.5
1,108,425	-		EFB2_01065	0.45	-0.1
1,108,425	-		EFB2_01065	0.45	-2.9
1,108,425	-		EFB2_01065	0.45	-0.2
1,108,425	-		EFB2_01065	0.45	-0.7
1,108,425	-		EFB2_01065	0.45	+0.5
1,108,530	-		EFB2_01065	0.51	-0.6
1,108,530	-		EFB2_01065	0.51	-2.7
1,108,530	-		EFB2_01065	0.51	-2.6
1,108,539	+		EFB2_01065	0.52	-1.2
1,108,539	+		EFB2_01065	0.52	-1.9
1,108,540	-		EFB2_01065	0.52	-0.6