Strain Fitness in Escherichia fergusonii Becca around EFB2_01050

Experiment: BHIS_CaCl2 no phage control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control
1,087,570	+		EFB2_01049	0.15	-0.6
1,087,570	+		EFB2_01049	0.15	-0.7
1,087,570	+		EFB2_01049	0.15	+0.3
1,087,570	+		EFB2_01049	0.15	-0.5
1,087,570	+		EFB2_01049	0.15	-1.7
1,087,570	+		EFB2_01049	0.15	+0.5
1,087,571	-		EFB2_01049	0.15	+0.1
1,087,628	+		EFB2_01049	0.20	+1.6
1,087,628	+		EFB2_01049	0.20	+0.1
1,087,628	+		EFB2_01049	0.20	+1.2
1,087,628	+		EFB2_01049	0.20	-0.4
1,087,628	+		EFB2_01049	0.20	-0.3
1,087,628	+		EFB2_01049	0.20	+1.4
1,087,628	+		EFB2_01049	0.20	-1.0
1,087,629	-		EFB2_01049	0.20	+0.5
1,087,629	-		EFB2_01049	0.20	-1.5
1,087,629	-		EFB2_01049	0.20	-0.7
1,087,629	-		EFB2_01049	0.20	-0.7
1,087,662	+		EFB2_01049	0.24	+0.2
1,087,663	-		EFB2_01049	0.24	+0.5
1,087,663	-		EFB2_01049	0.24	+0.9
1,087,663	-		EFB2_01049	0.24	+0.3
1,087,665	-		EFB2_01049	0.24	+0.1
1,087,680	+		EFB2_01049	0.25	-0.2
1,087,689	+		EFB2_01049	0.26	+0.8
1,087,689	+		EFB2_01049	0.26	-0.2
1,087,689	+		EFB2_01049	0.26	-0.8
1,087,689	+		EFB2_01049	0.26	+1.0
1,087,689	+		EFB2_01049	0.26	-0.5
1,087,689	+		EFB2_01049	0.26	+1.0
1,087,689	+		EFB2_01049	0.26	+0.4
1,087,689	+		EFB2_01049	0.26	-0.1
1,087,689	+		EFB2_01049	0.26	+0.2
1,087,689	+		EFB2_01049	0.26	-0.1
1,087,689	+		EFB2_01049	0.26	+0.1
1,087,689	+		EFB2_01049	0.26	-0.6
1,087,689	+		EFB2_01049	0.26	-0.2
1,087,689	+		EFB2_01049	0.26	+0.1
1,087,689	+		EFB2_01049	0.26	-0.8
1,087,689	+		EFB2_01049	0.26	-1.1
1,087,690	-		EFB2_01049	0.26	-0.8
1,087,690	-		EFB2_01049	0.26	+0.4
1,087,690	-		EFB2_01049	0.26	-0.7
1,087,690	-		EFB2_01049	0.26	+0.3
1,087,690	-		EFB2_01049	0.26	-0.5
1,087,690	-		EFB2_01049	0.26	+1.1
1,087,690	-		EFB2_01049	0.26	+0.6
1,087,690	-		EFB2_01049	0.26	+1.3
1,087,690	-		EFB2_01049	0.26	+0.4
1,087,690	-		EFB2_01049	0.26	+0.5
1,087,690	-		EFB2_01049	0.26	+1.1
1,087,692	+		EFB2_01049	0.26	+1.3
1,087,692	+		EFB2_01049	0.26	+1.4
1,087,692	+		EFB2_01049	0.26	-0.9
1,087,692	+		EFB2_01049	0.26	+0.5
1,087,692	+		EFB2_01049	0.26	-0.9
1,087,692	+		EFB2_01049	0.26	-1.0
1,087,692	+		EFB2_01049	0.26	+1.0
1,087,692	+		EFB2_01049	0.26	-0.1
1,087,692	+		EFB2_01049	0.26	-0.4
1,087,692	+		EFB2_01049	0.26	-0.2
1,087,692	+		EFB2_01049	0.26	-1.2
1,087,692	+		EFB2_01049	0.26	-0.8
1,087,692	+		EFB2_01049	0.26	-0.2
1,087,693	-		EFB2_01049	0.27	+1.0
1,087,693	-		EFB2_01049	0.27	+0.4
1,087,693	-		EFB2_01049	0.27	-0.1
1,087,693	-		EFB2_01049	0.27	+1.2
1,087,693	-		EFB2_01049	0.27	+1.5
1,087,693	-		EFB2_01049	0.27	-2.1
1,087,693	-		EFB2_01049	0.27	+0.5
1,087,693	-		EFB2_01049	0.27	-0.5
1,087,693	-		EFB2_01049	0.27	-2.1
1,087,693	-		EFB2_01049	0.27	+0.3
1,087,693	-		EFB2_01049	0.27	-0.1
1,087,724	+		EFB2_01049	0.29	+1.0
1,087,724	+		EFB2_01049	0.29	+0.5
1,087,760	+		EFB2_01049	0.33	-0.2
1,087,760	+		EFB2_01049	0.33	+0.1
1,087,761	-		EFB2_01049	0.33	-0.9
1,087,761	-		EFB2_01049	0.33	-0.2
1,087,784	+		EFB2_01049	0.35	+0.1
1,087,784	-		EFB2_01049	0.35	-0.4
1,087,807	+		EFB2_01049	0.37	-0.3
1,087,807	+		EFB2_01049	0.37	+0.7
1,087,807	+		EFB2_01049	0.37	+0.6
1,087,808	-		EFB2_01049	0.38	-0.3
1,087,808	-		EFB2_01049	0.38	-1.8
1,087,808	-		EFB2_01049	0.38	-1.2
1,087,808	-		EFB2_01049	0.38	-0.1
1,087,835	+		EFB2_01049	0.40	-0.3
1,087,836	-		EFB2_01049	0.40	+1.0
1,087,858	-		EFB2_01049	0.42	+0.5
1,087,858	-		EFB2_01049	0.42	-0.1
1,087,858	-		EFB2_01049	0.42	+1.3
1,087,858	-		EFB2_01049	0.42	+0.0
1,087,858	-		EFB2_01049	0.42	+0.8
1,087,892	+		EFB2_01049	0.46	-0.7
1,087,893	-		EFB2_01049	0.46	-0.4
1,087,893	-		EFB2_01049	0.46	+0.6
1,087,893	-		EFB2_01049	0.46	+3.0
1,087,900	+		EFB2_01049	0.46	+0.5
1,087,901	-		EFB2_01049	0.46	-0.6
1,087,901	-		EFB2_01049	0.46	-1.6
1,087,932	+		EFB2_01049	0.49	+1.0
1,087,932	+		EFB2_01049	0.49	-1.8
1,087,932	+		EFB2_01049	0.49	-0.4
1,087,933	-		EFB2_01049	0.50	-1.8
1,087,933	-		EFB2_01049	0.50	+0.7
1,087,934	+		EFB2_01049	0.50	-1.3
1,087,934	+		EFB2_01049	0.50	+0.1
1,087,935	-		EFB2_01049	0.50	-1.7
1,087,935	-		EFB2_01049	0.50	-1.0
1,087,935	-		EFB2_01049	0.50	-0.5
1,087,958	+		EFB2_01049	0.52	+1.6
1,087,958	+		EFB2_01049	0.52	+0.5
1,087,958	+		EFB2_01049	0.52	+0.2
1,087,959	-		EFB2_01049	0.52	-0.4
1,087,959	-		EFB2_01049	0.52	-0.2
1,087,959	-		EFB2_01049	0.52	+1.0
1,088,019	+		EFB2_01049	0.58	+1.8
1,088,019	+		EFB2_01049	0.58	+0.2
1,088,019	+		EFB2_01049	0.58	-0.5
1,088,019	+		EFB2_01049	0.58	+0.0
1,088,019	+		EFB2_01049	0.58	+2.0
1,088,019	+		EFB2_01049	0.58	-0.5
1,088,019	+		EFB2_01049	0.58	-0.2
1,088,019	+		EFB2_01049	0.58	-0.7
1,088,019	+		EFB2_01049	0.58	+0.4
1,088,019	+		EFB2_01049	0.58	+0.1
1,088,019	+		EFB2_01049	0.58	-0.2
1,088,019	+		EFB2_01049	0.58	-1.2
1,088,020	-		EFB2_01049	0.58	-1.4
1,088,020	-		EFB2_01049	0.58	-0.4
1,088,020	-		EFB2_01049	0.58	-1.7
1,088,020	-		EFB2_01049	0.58	+0.6
1,088,020	-		EFB2_01049	0.58	+1.4
1,088,020	-		EFB2_01049	0.58	-1.4
1,088,020	-		EFB2_01049	0.58	+1.0
1,088,020	-		EFB2_01049	0.58	-0.9
1,088,020	-		EFB2_01049	0.58	-0.0
1,088,020	-		EFB2_01049	0.58	-0.2
1,088,020	-		EFB2_01049	0.58	+0.2
1,088,020	-		EFB2_01049	0.58	-0.0
1,088,020	-		EFB2_01049	0.58	-0.6
1,088,020	-		EFB2_01049	0.58	+1.3
1,088,020	-		EFB2_01049	0.58	-0.6
1,088,020	-		EFB2_01049	0.58	-0.4
1,088,020	-		EFB2_01049	0.58	-0.9
1,088,022	-		EFB2_01049	0.58	+0.7
1,088,022	-		EFB2_01049	0.58	+0.4
1,088,072	+		EFB2_01049	0.63	+1.5
1,088,073	-		EFB2_01049	0.63	-0.8
1,088,073	-		EFB2_01049	0.63	-0.3
1,088,073	-		EFB2_01049	0.63	-0.3
1,088,073	-		EFB2_01049	0.63	-1.7
1,088,084	+		EFB2_01049	0.64	-0.9
1,088,084	+		EFB2_01049	0.64	-0.1
1,088,084	+		EFB2_01049	0.64	-0.8
1,088,084	+		EFB2_01049	0.64	-1.2
1,088,084	+		EFB2_01049	0.64	+1.0
1,088,084	+		EFB2_01049	0.64	-0.1
1,088,085	-		EFB2_01049	0.64	+0.1
1,088,085	-		EFB2_01049	0.64	+1.3
1,088,175	+		EFB2_01049	0.73	-1.5
1,088,175	+		EFB2_01049	0.73	-0.2
1,088,175	+		EFB2_01049	0.73	-0.3
1,088,176	-		EFB2_01049	0.73	-0.1
1,088,176	-		EFB2_01049	0.73	-0.4
1,088,176	-		EFB2_01049	0.73	-0.1
1,088,208	+		EFB2_01049	0.76	-0.8
1,088,208	+		EFB2_01049	0.76	-1.4
1,088,208	+		EFB2_01049	0.76	-2.9
1,088,209	-		EFB2_01049	0.76	-1.6
1,088,209	-		EFB2_01049	0.76	-0.2
1,088,209	-		EFB2_01049	0.76	+0.2
1,088,212	+		EFB2_01049	0.76	-0.2
1,088,212	+		EFB2_01049	0.76	-1.1
1,088,212	+		EFB2_01049	0.76	+1.0
1,088,212	+		EFB2_01049	0.76	-0.8
1,088,255	+		EFB2_01049	0.80	+1.7
1,088,255	+		EFB2_01049	0.80	+1.1
1,088,255	+		EFB2_01049	0.80	-0.7
1,088,255	+		EFB2_01049	0.80	-0.8
1,088,255	+		EFB2_01049	0.80	-0.8
1,088,255	+		EFB2_01049	0.80	+0.5
1,088,255	+		EFB2_01049	0.80	+0.8
1,088,255	+		EFB2_01049	0.80	+0.6
1,088,256	-		EFB2_01049	0.81	+0.3
1,088,256	-		EFB2_01049	0.81	-0.5
1,088,256	-		EFB2_01049	0.81	+0.2
1,088,256	-		EFB2_01049	0.81	-1.7
1,088,256	-		EFB2_01049	0.81	-1.0
1,088,256	-		EFB2_01049	0.81	-0.9
1,088,256	-		EFB2_01049	0.81	-2.9
1,088,256	-		EFB2_01049	0.81	-1.2
1,088,256	-		EFB2_01049	0.81	-0.8
1,088,293	+		EFB2_01049	0.84	+1.1
1,088,293	+		EFB2_01049	0.84	-0.3
1,088,300	+		EFB2_01049	0.85	-1.4
1,088,301	-		EFB2_01049	0.85	-0.4
1,088,301	-		EFB2_01049	0.85	+2.2
1,088,301	-		EFB2_01049	0.85	-2.0
1,088,301	-		EFB2_01049	0.85	-0.7
1,088,325	+		EFB2_01049	0.87	-1.8
1,088,326	-		EFB2_01049	0.87	-0.1
1,088,326	-		EFB2_01049	0.87	+0.3
1,088,345	+		EFB2_01049	0.89	-0.1
1,088,345	+		EFB2_01049	0.89	+0.1
1,088,346	-		EFB2_01049	0.89	+0.0
1,088,346	-		EFB2_01049	0.89	-0.4
1,088,346	-		EFB2_01049	0.89	+0.1
1,088,346	-		EFB2_01049	0.89	+0.1
1,088,346	-		EFB2_01049	0.89	-0.3
1,088,346	-		EFB2_01049	0.89	-0.8
1,088,346	-		EFB2_01049	0.89	+2.0
1,088,346	-		EFB2_01049	0.89	+2.5
1,088,346	-		EFB2_01049	0.89	+0.5
1,088,441	-				-1.5
1,088,441	-				+0.9
1,088,441	-				-0.4
1,088,442	+				+0.2
1,088,442	+				-0.3
1,088,442	+				+0.8
1,088,442	+				+0.5
1,088,442	+				-1.0
1,088,442	+				-0.4
1,088,443	-				+0.8
1,088,443	-				-1.0
1,088,443	-				-0.7
1,088,443	-				-1.0
1,088,443	-				+1.0
1,088,443	-				-0.2
1,088,450	+				+0.6
1,088,451	-				-0.4
1,088,451	-				+0.0
1,088,472	+				+2.6
1,088,473	-				+0.4
1,088,474	+				-1.4
1,088,475	-				-2.4
1,088,475	-				+0.0
1,088,485	+				-0.7
1,088,485	+				+1.5
1,088,485	+				+0.6
1,088,485	+				+0.3
1,088,485	+				+0.4
1,088,485	+				+1.3
1,088,485	+				-2.7
1,088,485	+				+0.7
1,088,485	+				-0.3
1,088,486	-				+0.5
1,088,486	-				-0.7
1,088,486	-				+1.7
1,088,486	-				+0.9
1,088,486	-				+0.0
1,088,486	-				-0.1
1,088,486	-				+1.0
1,088,486	-				-1.0
1,088,486	-				+1.3
1,088,486	-				+0.8
1,088,486	-				-0.4
1,088,486	-				+1.0
1,088,486	-				+1.6
1,088,486	-				-0.4
1,088,486	-				-0.8
1,088,492	+				-0.3
1,088,492	+				+0.5
1,088,493	-				+1.0
1,088,493	-				-0.1
1,088,494	+				+0.4
1,088,495	-				+1.7
1,088,495	-				-0.7
1,088,495	-				-0.2
1,088,559	+				-0.3
1,088,560	-				-0.4
1,088,560	-				+0.3
1,088,577	-				-2.9
1,088,616	-		EFB2_01050	0.23	+1.7
1,088,632	+		EFB2_01050	0.31	+0.4
1,088,632	+		EFB2_01050	0.31	-0.0
1,088,633	-		EFB2_01050	0.31	+0.9
1,088,687	+		EFB2_01050	0.56	+0.0
1,088,688	-		EFB2_01050	0.56	+0.2
1,088,688	-		EFB2_01050	0.56	+0.8
1,088,713	+		EFB2_01050	0.68	-0.4
1,088,713	+		EFB2_01050	0.68	-1.3
1,088,713	+		EFB2_01050	0.68	+2.8
1,088,713	+		EFB2_01050	0.68	-1.8
1,088,713	+		EFB2_01050	0.68	+1.1
1,088,713	+		EFB2_01050	0.68	-0.7
1,088,713	+		EFB2_01050	0.68	-0.5
1,088,713	+		EFB2_01050	0.68	+0.8
1,088,713	+		EFB2_01050	0.68	+2.2
1,088,714	-		EFB2_01050	0.68	+0.3
1,088,714	-		EFB2_01050	0.68	+1.5
1,088,714	-		EFB2_01050	0.68	-1.0
1,088,714	-		EFB2_01050	0.68	+0.6
1,088,714	-		EFB2_01050	0.68	+0.7
1,088,714	-		EFB2_01050	0.68	+0.5
1,088,714	-		EFB2_01050	0.68	-1.0
1,088,714	-		EFB2_01050	0.68	+0.5
1,088,714	-		EFB2_01050	0.68	+0.4
1,088,714	-		EFB2_01050	0.68	-2.2
1,088,714	-		EFB2_01050	0.68	-0.5
1,088,714	-		EFB2_01050	0.68	+2.4
1,088,714	-		EFB2_01050	0.68	+0.6
1,088,714	-		EFB2_01050	0.68	-1.2
1,088,714	-		EFB2_01050	0.68	-0.6
1,088,714	-		EFB2_01050	0.68	-0.2
1,088,763	+				+0.5
1,088,764	-				-0.1
1,088,764	-				+1.0
1,088,764	-				+1.1
1,088,766	+				-0.8
1,088,766	+				+0.0
1,088,767	-				-1.3
1,088,808	+				+5.7
1,088,808	+				+0.4
1,088,808	+				+0.7
1,088,808	+				-0.1
1,088,808	+				+0.9
1,088,808	+				+0.5
1,088,808	+				+0.0
1,088,808	+				+1.3
1,088,808	+				+1.9
1,088,808	+				+0.5
1,088,808	+				-1.2
1,088,808	+				-0.6
1,088,808	+				+1.7
1,088,808	+				-0.9
1,088,808	+				-0.7
1,088,808	+				-0.7
1,088,808	+				+0.7
1,088,808	+				+0.6
1,088,808	+				-1.2
1,088,809	-				-0.5
1,088,809	-				-1.2
1,088,809	-				+0.2
1,088,809	-				-1.1
1,088,809	-				-0.0
1,088,809	-				-1.3
1,088,809	-				-1.9
1,088,809	-				-0.1
1,088,809	-				-1.7
1,088,809	-				+0.6
1,088,809	-				-1.0
1,088,809	-				-2.7
1,088,809	-				-0.3
1,088,809	-				-0.0
1,088,809	-				+1.3
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1,089,672	-				+0.2
1,089,672	-				+0.4
1,089,672	-				-0.7
1,089,672	-				-0.4
1,089,672	-				+1.0
1,089,672	-				-1.1
1,089,672	-				-0.4
1,089,672	-				-0.6
1,089,672	-				+0.6
1,089,672	-				-0.8
1,089,672	-				-0.2
1,089,730	+				+0.3
1,089,731	-				-0.4
1,089,731	-				+0.3
1,089,731	-				-0.2
1,089,758	+				+0.1