Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05406 and BACOVA_05407 are separated by 41 nucleotides BACOVA_05407 and BACOVA_05408 overlap by 19 nucleotides BACOVA_05408 and BACOVA_05409 are separated by 24 nucleotides
BACOVA_05406: BACOVA_05406 - META domain protein, at 886,464 to 887,252
_05406
BACOVA_05407: BACOVA_05407 - hypothetical protein, at 887,294 to 887,452
_05407
BACOVA_05408: BACOVA_05408 - hypothetical protein, at 887,434 to 887,556
_05408
BACOVA_05409: BACOVA_05409 - chaperone protein DnaK, at 887,581 to 889,494
_05409
Position (kb) 887
888 Strain fitness (log2 ratio) -2
-1
0
1
2 at 886.443 kb on + strand at 886.463 kb on + strand at 886.463 kb on + strand at 886.464 kb on - strand at 886.475 kb on - strand at 886.475 kb on - strand at 886.557 kb on - strand, within BACOVA_05406 at 886.579 kb on + strand, within BACOVA_05406 at 886.579 kb on + strand, within BACOVA_05406 at 886.580 kb on - strand, within BACOVA_05406 at 886.616 kb on + strand, within BACOVA_05406 at 886.745 kb on + strand, within BACOVA_05406 at 886.775 kb on + strand, within BACOVA_05406 at 886.789 kb on + strand, within BACOVA_05406 at 886.789 kb on + strand, within BACOVA_05406 at 886.811 kb on - strand, within BACOVA_05406 at 886.811 kb on - strand, within BACOVA_05406 at 886.811 kb on - strand, within BACOVA_05406 at 886.818 kb on + strand, within BACOVA_05406 at 886.819 kb on - strand, within BACOVA_05406 at 886.820 kb on + strand, within BACOVA_05406 at 886.820 kb on + strand, within BACOVA_05406 at 886.820 kb on + strand, within BACOVA_05406 at 886.820 kb on + strand, within BACOVA_05406 at 886.820 kb on + strand, within BACOVA_05406 at 886.820 kb on + strand, within BACOVA_05406 at 886.820 kb on + strand, within BACOVA_05406 at 886.821 kb on - strand, within BACOVA_05406 at 886.821 kb on - strand, within BACOVA_05406 at 887.036 kb on + strand, within BACOVA_05406 at 887.046 kb on - strand, within BACOVA_05406 at 887.066 kb on + strand, within BACOVA_05406 at 887.145 kb on - strand, within BACOVA_05406 at 887.159 kb on + strand, within BACOVA_05406 at 887.160 kb on - strand, within BACOVA_05406 at 887.211 kb on + strand at 887.212 kb on - strand at 887.212 kb on - strand at 887.212 kb on - strand at 887.212 kb on - strand at 887.253 kb on + strand at 887.257 kb on + strand at 887.267 kb on + strand at 887.270 kb on - strand at 887.272 kb on - strand at 887.345 kb on - strand, within BACOVA_05407 at 887.345 kb on - strand, within BACOVA_05407 at 887.380 kb on - strand, within BACOVA_05407 at 887.388 kb on - strand, within BACOVA_05407 at 887.388 kb on - strand, within BACOVA_05407 at 887.403 kb on - strand, within BACOVA_05407 at 887.433 kb on + strand, within BACOVA_05407 at 887.433 kb on + strand, within BACOVA_05407 at 887.513 kb on + strand, within BACOVA_05408
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 886,443 + -1.0 886,463 + +1.6 886,463 + +2.1 886,464 - +0.7 886,475 - +0.3 886,475 - -0.1 886,557 - BACOVA_05406 0.12 -1.3 886,579 + BACOVA_05406 0.15 -0.2 886,579 + BACOVA_05406 0.15 +0.1 886,580 - BACOVA_05406 0.15 -1.1 886,616 + BACOVA_05406 0.19 -1.1 886,745 + BACOVA_05406 0.36 -1.2 886,775 + BACOVA_05406 0.39 -0.9 886,789 + BACOVA_05406 0.41 -1.6 886,789 + BACOVA_05406 0.41 -0.3 886,811 - BACOVA_05406 0.44 +0.5 886,811 - BACOVA_05406 0.44 -0.4 886,811 - BACOVA_05406 0.44 -1.4 886,818 + BACOVA_05406 0.45 +0.1 886,819 - BACOVA_05406 0.45 -0.6 886,820 + BACOVA_05406 0.45 -2.1 886,820 + BACOVA_05406 0.45 +1.0 886,820 + BACOVA_05406 0.45 +1.4 886,820 + BACOVA_05406 0.45 -0.1 886,820 + BACOVA_05406 0.45 +1.3 886,820 + BACOVA_05406 0.45 +0.0 886,820 + BACOVA_05406 0.45 -0.6 886,821 - BACOVA_05406 0.45 -0.3 886,821 - BACOVA_05406 0.45 -1.4 887,036 + BACOVA_05406 0.72 -0.5 887,046 - BACOVA_05406 0.74 -0.2 887,066 + BACOVA_05406 0.76 -0.9 887,145 - BACOVA_05406 0.86 -0.5 887,159 + BACOVA_05406 0.88 -0.1 887,160 - BACOVA_05406 0.88 +2.1 887,211 + -0.8 887,212 - -0.8 887,212 - +0.0 887,212 - -1.4 887,212 - -1.3 887,253 + -0.7 887,257 + +1.1 887,267 + +1.0 887,270 - -0.4 887,272 - -0.3 887,345 - BACOVA_05407 0.32 -0.2 887,345 - BACOVA_05407 0.32 +1.1 887,380 - BACOVA_05407 0.54 -0.7 887,388 - BACOVA_05407 0.59 -0.8 887,388 - BACOVA_05407 0.59 -0.0 887,403 - BACOVA_05407 0.69 -0.6 887,433 + BACOVA_05407 0.87 -2.0 887,433 + BACOVA_05407 0.87 +1.6 887,513 + BACOVA_05408 0.64 -0.7
Or see this region's nucleotide sequence