Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04794 and BACOVA_04795 are separated by 200 nucleotides BACOVA_04795 and BACOVA_04796 are separated by 225 nucleotides BACOVA_04796 and BACOVA_04797 overlap by 1 nucleotides
BACOVA_04794: BACOVA_04794 - hypothetical protein, at 148,071 to 149,345
_04794
BACOVA_04795: BACOVA_04795 - site-specific recombinase, phage integrase family, at 149,546 to 150,604
_04795
BACOVA_04796: BACOVA_04796 - hypothetical protein, at 150,830 to 151,600
_04796
BACOVA_04797: BACOVA_04797 - hypothetical protein, at 151,600 to 152,286
_04797
Position (kb) 149
150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 149.169 kb on + strand, within BACOVA_04794 at 149.366 kb on - strand at 149.366 kb on - strand at 149.371 kb on - strand at 149.371 kb on - strand at 149.382 kb on - strand at 149.441 kb on + strand at 149.442 kb on - strand at 149.442 kb on - strand at 149.442 kb on - strand at 149.457 kb on + strand at 149.508 kb on - strand at 149.541 kb on - strand at 149.541 kb on - strand at 149.541 kb on - strand at 149.609 kb on + strand at 149.610 kb on - strand at 149.633 kb on + strand at 149.668 kb on + strand, within BACOVA_04795 at 149.668 kb on + strand, within BACOVA_04795 at 149.669 kb on - strand, within BACOVA_04795 at 149.672 kb on + strand, within BACOVA_04795 at 149.672 kb on + strand, within BACOVA_04795 at 149.672 kb on + strand, within BACOVA_04795 at 149.673 kb on - strand, within BACOVA_04795 at 149.673 kb on - strand, within BACOVA_04795 at 149.673 kb on - strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.676 kb on + strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.677 kb on - strand, within BACOVA_04795 at 149.681 kb on - strand, within BACOVA_04795 at 149.705 kb on + strand, within BACOVA_04795 at 149.766 kb on + strand, within BACOVA_04795 at 149.769 kb on - strand, within BACOVA_04795 at 149.796 kb on - strand, within BACOVA_04795 at 149.809 kb on + strand, within BACOVA_04795 at 149.809 kb on + strand, within BACOVA_04795 at 149.929 kb on + strand, within BACOVA_04795 at 149.929 kb on + strand, within BACOVA_04795 at 149.945 kb on - strand, within BACOVA_04795 at 149.954 kb on + strand, within BACOVA_04795 at 149.954 kb on + strand, within BACOVA_04795 at 149.968 kb on + strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.969 kb on - strand, within BACOVA_04795 at 149.974 kb on + strand, within BACOVA_04795 at 149.975 kb on - strand, within BACOVA_04795 at 150.026 kb on - strand, within BACOVA_04795 at 150.035 kb on + strand, within BACOVA_04795 at 150.035 kb on + strand, within BACOVA_04795 at 150.036 kb on - strand, within BACOVA_04795 at 150.062 kb on + strand, within BACOVA_04795 at 150.063 kb on - strand, within BACOVA_04795 at 150.066 kb on - strand, within BACOVA_04795 at 150.072 kb on - strand, within BACOVA_04795 at 150.129 kb on - strand, within BACOVA_04795 at 150.211 kb on + strand, within BACOVA_04795 at 150.241 kb on - strand, within BACOVA_04795 at 150.246 kb on - strand, within BACOVA_04795 at 150.268 kb on - strand, within BACOVA_04795 at 150.274 kb on + strand, within BACOVA_04795 at 150.274 kb on + strand, within BACOVA_04795 at 150.274 kb on + strand, within BACOVA_04795 at 150.275 kb on - strand, within BACOVA_04795 at 150.293 kb on - strand, within BACOVA_04795 at 150.319 kb on + strand, within BACOVA_04795 at 150.319 kb on + strand, within BACOVA_04795 at 150.320 kb on - strand, within BACOVA_04795 at 150.322 kb on - strand, within BACOVA_04795 at 150.325 kb on + strand, within BACOVA_04795 at 150.325 kb on + strand, within BACOVA_04795 at 150.325 kb on + strand, within BACOVA_04795 at 150.326 kb on - strand, within BACOVA_04795 at 150.340 kb on + strand, within BACOVA_04795 at 150.340 kb on + strand, within BACOVA_04795 at 150.361 kb on + strand, within BACOVA_04795 at 150.362 kb on - strand, within BACOVA_04795 at 150.383 kb on + strand, within BACOVA_04795 at 150.389 kb on + strand, within BACOVA_04795 at 150.458 kb on - strand, within BACOVA_04795 at 150.461 kb on - strand, within BACOVA_04795 at 150.476 kb on - strand, within BACOVA_04795 at 150.477 kb on + strand, within BACOVA_04795 at 150.478 kb on - strand, within BACOVA_04795 at 150.496 kb on - strand, within BACOVA_04795 at 150.516 kb on + strand at 150.517 kb on - strand at 150.524 kb on + strand at 150.525 kb on - strand at 150.528 kb on + strand at 150.552 kb on - strand at 150.590 kb on - strand at 150.638 kb on + strand at 150.639 kb on - strand at 150.639 kb on - strand at 150.639 kb on - strand at 150.639 kb on - strand at 150.642 kb on + strand at 150.677 kb on + strand at 150.690 kb on + strand at 150.695 kb on - strand at 150.709 kb on - strand at 150.744 kb on - strand at 150.744 kb on - strand at 150.816 kb on + strand at 150.865 kb on + strand at 150.887 kb on + strand at 150.889 kb on + strand at 150.956 kb on + strand, within BACOVA_04796 at 151.000 kb on - strand, within BACOVA_04796 at 151.008 kb on + strand, within BACOVA_04796 at 151.012 kb on - strand, within BACOVA_04796 at 151.034 kb on - strand, within BACOVA_04796 at 151.037 kb on + strand, within BACOVA_04796 at 151.113 kb on + strand, within BACOVA_04796 at 151.114 kb on - strand, within BACOVA_04796 at 151.124 kb on - strand, within BACOVA_04796 at 151.235 kb on + strand, within BACOVA_04796 at 151.254 kb on - strand, within BACOVA_04796 at 151.269 kb on - strand, within BACOVA_04796 at 151.277 kb on - strand, within BACOVA_04796 at 151.279 kb on - strand, within BACOVA_04796 at 151.317 kb on + strand, within BACOVA_04796 at 151.349 kb on + strand, within BACOVA_04796 at 151.350 kb on - strand, within BACOVA_04796 at 151.355 kb on + strand, within BACOVA_04796 at 151.391 kb on + strand, within BACOVA_04796 at 151.391 kb on + strand, within BACOVA_04796 at 151.392 kb on - strand, within BACOVA_04796 at 151.467 kb on - strand, within BACOVA_04796 at 151.478 kb on + strand, within BACOVA_04796 at 151.479 kb on - strand, within BACOVA_04796 at 151.491 kb on - strand, within BACOVA_04796 at 151.572 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 149,169 + BACOVA_04794 0.86 +1.1 149,366 - +0.8 149,366 - -1.6 149,371 - +1.7 149,371 - -0.2 149,382 - -0.9 149,441 + -0.2 149,442 - +0.9 149,442 - -0.0 149,442 - +0.4 149,457 + -1.2 149,508 - +0.7 149,541 - -0.3 149,541 - +1.0 149,541 - +1.7 149,609 + +0.9 149,610 - +0.3 149,633 + -0.2 149,668 + BACOVA_04795 0.12 -1.9 149,668 + BACOVA_04795 0.12 +2.0 149,669 - BACOVA_04795 0.12 +1.2 149,672 + BACOVA_04795 0.12 +2.7 149,672 + BACOVA_04795 0.12 -2.0 149,672 + BACOVA_04795 0.12 -0.3 149,673 - BACOVA_04795 0.12 +2.1 149,673 - BACOVA_04795 0.12 +0.1 149,673 - BACOVA_04795 0.12 -1.3 149,676 + BACOVA_04795 0.12 +1.5 149,676 + BACOVA_04795 0.12 -1.8 149,676 + BACOVA_04795 0.12 -0.2 149,676 + BACOVA_04795 0.12 -0.3 149,676 + BACOVA_04795 0.12 +0.2 149,676 + BACOVA_04795 0.12 +0.3 149,676 + BACOVA_04795 0.12 -0.8 149,676 + BACOVA_04795 0.12 +1.3 149,676 + BACOVA_04795 0.12 -0.1 149,677 - BACOVA_04795 0.12 +1.7 149,677 - BACOVA_04795 0.12 +0.9 149,677 - BACOVA_04795 0.12 -1.0 149,677 - BACOVA_04795 0.12 +0.4 149,681 - BACOVA_04795 0.13 +2.2 149,705 + BACOVA_04795 0.15 -0.5 149,766 + BACOVA_04795 0.21 -1.2 149,769 - BACOVA_04795 0.21 +1.4 149,796 - BACOVA_04795 0.24 -0.5 149,809 + BACOVA_04795 0.25 -1.0 149,809 + BACOVA_04795 0.25 -0.6 149,929 + BACOVA_04795 0.36 -1.9 149,929 + BACOVA_04795 0.36 +0.5 149,945 - BACOVA_04795 0.38 +0.9 149,954 + BACOVA_04795 0.39 +1.3 149,954 + BACOVA_04795 0.39 +0.6 149,968 + BACOVA_04795 0.40 +1.1 149,969 - BACOVA_04795 0.40 -2.9 149,969 - BACOVA_04795 0.40 -0.9 149,969 - BACOVA_04795 0.40 -2.2 149,969 - BACOVA_04795 0.40 -0.2 149,974 + BACOVA_04795 0.40 +2.3 149,975 - BACOVA_04795 0.41 +1.1 150,026 - BACOVA_04795 0.45 +0.0 150,035 + BACOVA_04795 0.46 -1.5 150,035 + BACOVA_04795 0.46 +1.1 150,036 - BACOVA_04795 0.46 +0.4 150,062 + BACOVA_04795 0.49 -0.8 150,063 - BACOVA_04795 0.49 +0.4 150,066 - BACOVA_04795 0.49 +0.7 150,072 - BACOVA_04795 0.50 -1.9 150,129 - BACOVA_04795 0.55 +0.6 150,211 + BACOVA_04795 0.63 +0.1 150,241 - BACOVA_04795 0.66 +0.5 150,246 - BACOVA_04795 0.66 -0.5 150,268 - BACOVA_04795 0.68 -0.7 150,274 + BACOVA_04795 0.69 -1.6 150,274 + BACOVA_04795 0.69 +0.1 150,274 + BACOVA_04795 0.69 +0.3 150,275 - BACOVA_04795 0.69 +0.6 150,293 - BACOVA_04795 0.71 -0.5 150,319 + BACOVA_04795 0.73 -0.3 150,319 + BACOVA_04795 0.73 +0.7 150,320 - BACOVA_04795 0.73 -1.4 150,322 - BACOVA_04795 0.73 -0.0 150,325 + BACOVA_04795 0.74 -1.2 150,325 + BACOVA_04795 0.74 +0.0 150,325 + BACOVA_04795 0.74 +1.0 150,326 - BACOVA_04795 0.74 +0.8 150,340 + BACOVA_04795 0.75 -0.8 150,340 + BACOVA_04795 0.75 +1.1 150,361 + BACOVA_04795 0.77 -1.7 150,362 - BACOVA_04795 0.77 +0.8 150,383 + BACOVA_04795 0.79 -1.1 150,389 + BACOVA_04795 0.80 +0.1 150,458 - BACOVA_04795 0.86 -0.1 150,461 - BACOVA_04795 0.86 +0.1 150,476 - BACOVA_04795 0.88 +0.7 150,477 + BACOVA_04795 0.88 +1.7 150,478 - BACOVA_04795 0.88 +0.8 150,496 - BACOVA_04795 0.90 +0.6 150,516 + +2.3 150,517 - -0.9 150,524 + -1.3 150,525 - -0.2 150,528 + +0.2 150,552 - +0.9 150,590 - -0.5 150,638 + -1.1 150,639 - +1.0 150,639 - -0.7 150,639 - +0.5 150,639 - -0.3 150,642 + -0.2 150,677 + +0.6 150,690 + -0.4 150,695 - -0.0 150,709 - +1.7 150,744 - +0.0 150,744 - -0.1 150,816 + +0.4 150,865 + -0.6 150,887 + -0.6 150,889 + +0.3 150,956 + BACOVA_04796 0.16 +1.6 151,000 - BACOVA_04796 0.22 +1.1 151,008 + BACOVA_04796 0.23 +0.5 151,012 - BACOVA_04796 0.24 -0.5 151,034 - BACOVA_04796 0.26 +1.1 151,037 + BACOVA_04796 0.27 +1.5 151,113 + BACOVA_04796 0.37 -1.7 151,114 - BACOVA_04796 0.37 -0.5 151,124 - BACOVA_04796 0.38 -0.0 151,235 + BACOVA_04796 0.53 +0.4 151,254 - BACOVA_04796 0.55 +0.1 151,269 - BACOVA_04796 0.57 +0.2 151,277 - BACOVA_04796 0.58 -0.3 151,279 - BACOVA_04796 0.58 -0.7 151,317 + BACOVA_04796 0.63 -0.5 151,349 + BACOVA_04796 0.67 -0.5 151,350 - BACOVA_04796 0.67 +0.3 151,355 + BACOVA_04796 0.68 +0.9 151,391 + BACOVA_04796 0.73 -1.0 151,391 + BACOVA_04796 0.73 -1.5 151,392 - BACOVA_04796 0.73 +0.1 151,467 - BACOVA_04796 0.83 -2.1 151,478 + BACOVA_04796 0.84 -0.7 151,479 - BACOVA_04796 0.84 -2.9 151,491 - BACOVA_04796 0.86 -0.9 151,572 + -0.5
Or see this region's nucleotide sequence