Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04725 and BACOVA_04726 are separated by 23 nucleotides BACOVA_04726 and BACOVA_04727 are separated by 24 nucleotides BACOVA_04727 and BACOVA_04728 are separated by 14 nucleotides BACOVA_04728 and BACOVA_04729 are separated by 14 nucleotides
BACOVA_04725: BACOVA_04725 - hypothetical protein, at 89,814 to 90,095
_04725
BACOVA_04726: BACOVA_04726 - peptidase, M23 family, at 90,119 to 90,949
_04726
BACOVA_04727: BACOVA_04727 - hypothetical protein, at 90,974 to 91,639
_04727
BACOVA_04728: BACOVA_04728 - hypothetical protein, at 91,654 to 92,337
_04728
BACOVA_04729: BACOVA_04729 - hypothetical protein, at 92,352 to 93,041
_04729
Position (kb) 90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 90.057 kb on + strand, within BACOVA_04725 at 90.072 kb on + strand at 90.072 kb on + strand at 90.171 kb on + strand at 90.253 kb on + strand, within BACOVA_04726 at 90.253 kb on + strand, within BACOVA_04726 at 90.253 kb on + strand, within BACOVA_04726 at 90.253 kb on + strand, within BACOVA_04726 at 90.254 kb on - strand, within BACOVA_04726 at 90.254 kb on - strand, within BACOVA_04726 at 90.254 kb on - strand, within BACOVA_04726 at 90.289 kb on + strand, within BACOVA_04726 at 90.369 kb on + strand, within BACOVA_04726 at 90.370 kb on - strand, within BACOVA_04726 at 90.394 kb on + strand, within BACOVA_04726 at 90.395 kb on - strand, within BACOVA_04726 at 90.396 kb on + strand, within BACOVA_04726 at 90.396 kb on + strand, within BACOVA_04726 at 90.397 kb on - strand, within BACOVA_04726 at 90.397 kb on - strand, within BACOVA_04726 at 90.428 kb on + strand, within BACOVA_04726 at 90.429 kb on - strand, within BACOVA_04726 at 90.429 kb on - strand, within BACOVA_04726 at 90.440 kb on - strand, within BACOVA_04726 at 90.617 kb on + strand, within BACOVA_04726 at 90.678 kb on + strand, within BACOVA_04726 at 90.678 kb on + strand, within BACOVA_04726 at 90.691 kb on - strand, within BACOVA_04726 at 90.780 kb on + strand, within BACOVA_04726 at 90.780 kb on + strand, within BACOVA_04726 at 90.901 kb on + strand at 90.940 kb on + strand at 90.942 kb on + strand at 90.975 kb on + strand at 91.033 kb on + strand at 91.231 kb on + strand, within BACOVA_04727 at 91.612 kb on - strand at 91.639 kb on + strand at 91.708 kb on + strand at 91.708 kb on + strand at 91.778 kb on + strand, within BACOVA_04728 at 91.846 kb on + strand, within BACOVA_04728 at 92.031 kb on + strand, within BACOVA_04728 at 92.067 kb on - strand, within BACOVA_04728 at 92.068 kb on + strand, within BACOVA_04728 at 92.089 kb on + strand, within BACOVA_04728 at 92.111 kb on + strand, within BACOVA_04728 at 92.237 kb on + strand, within BACOVA_04728 at 92.309 kb on - strand at 92.317 kb on + strand at 92.354 kb on - strand at 92.467 kb on + strand, within BACOVA_04729 at 92.467 kb on + strand, within BACOVA_04729 at 92.468 kb on - strand, within BACOVA_04729 at 92.470 kb on + strand, within BACOVA_04729 at 92.471 kb on - strand, within BACOVA_04729 at 92.475 kb on + strand, within BACOVA_04729 at 92.497 kb on - strand, within BACOVA_04729 at 92.571 kb on - strand, within BACOVA_04729
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 90,057 + BACOVA_04725 0.86 -0.9 90,072 + -0.8 90,072 + +1.9 90,171 + -2.5 90,253 + BACOVA_04726 0.16 -0.1 90,253 + BACOVA_04726 0.16 +0.7 90,253 + BACOVA_04726 0.16 -1.8 90,253 + BACOVA_04726 0.16 +0.5 90,254 - BACOVA_04726 0.16 +1.1 90,254 - BACOVA_04726 0.16 -0.3 90,254 - BACOVA_04726 0.16 -0.7 90,289 + BACOVA_04726 0.20 -0.3 90,369 + BACOVA_04726 0.30 -1.0 90,370 - BACOVA_04726 0.30 +0.1 90,394 + BACOVA_04726 0.33 -1.7 90,395 - BACOVA_04726 0.33 -1.2 90,396 + BACOVA_04726 0.33 -1.3 90,396 + BACOVA_04726 0.33 +0.3 90,397 - BACOVA_04726 0.33 -0.9 90,397 - BACOVA_04726 0.33 +1.2 90,428 + BACOVA_04726 0.37 +0.8 90,429 - BACOVA_04726 0.37 -2.8 90,429 - BACOVA_04726 0.37 -1.4 90,440 - BACOVA_04726 0.39 +0.4 90,617 + BACOVA_04726 0.60 -1.6 90,678 + BACOVA_04726 0.67 -0.6 90,678 + BACOVA_04726 0.67 +0.5 90,691 - BACOVA_04726 0.69 -2.2 90,780 + BACOVA_04726 0.80 -0.5 90,780 + BACOVA_04726 0.80 -0.7 90,901 + -2.1 90,940 + +0.1 90,942 + +2.1 90,975 + -1.3 91,033 + +1.8 91,231 + BACOVA_04727 0.39 -0.8 91,612 - -2.5 91,639 + -1.0 91,708 + +1.1 91,708 + -0.3 91,778 + BACOVA_04728 0.18 +0.6 91,846 + BACOVA_04728 0.28 +0.1 92,031 + BACOVA_04728 0.55 -0.2 92,067 - BACOVA_04728 0.60 -1.8 92,068 + BACOVA_04728 0.61 -1.0 92,089 + BACOVA_04728 0.64 -0.2 92,111 + BACOVA_04728 0.67 -2.2 92,237 + BACOVA_04728 0.85 -0.4 92,309 - +1.6 92,317 + -1.2 92,354 - +1.5 92,467 + BACOVA_04729 0.17 +0.9 92,467 + BACOVA_04729 0.17 +1.1 92,468 - BACOVA_04729 0.17 -1.2 92,470 + BACOVA_04729 0.17 -0.3 92,471 - BACOVA_04729 0.17 -0.5 92,475 + BACOVA_04729 0.18 +0.0 92,497 - BACOVA_04729 0.21 +0.2 92,571 - BACOVA_04729 0.32 +0.7
Or see this region's nucleotide sequence