Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03652 and BACOVA_03653 are separated by 2 nucleotides BACOVA_03653 and BACOVA_03654 are separated by 128 nucleotides
BACOVA_03652: BACOVA_03652 - hypothetical protein, at 481,195 to 485,706
_03652
BACOVA_03653: BACOVA_03653 - outer membrane protein, OMP85 family, at 485,709 to 488,051
_03653
BACOVA_03654: BACOVA_03654 - hypothetical protein, at 488,180 to 489,091
_03654
Position (kb) 485
486
487
488
489 Strain fitness (log2 ratio) -2
-1
0
1
2 at 484.761 kb on - strand, within BACOVA_03652 at 484.765 kb on - strand, within BACOVA_03652 at 484.855 kb on + strand, within BACOVA_03652 at 484.970 kb on - strand, within BACOVA_03652 at 484.970 kb on - strand, within BACOVA_03652 at 485.138 kb on + strand, within BACOVA_03652 at 485.488 kb on - strand at 485.667 kb on + strand at 485.704 kb on + strand at 485.719 kb on + strand at 485.719 kb on + strand at 485.719 kb on + strand at 485.719 kb on + strand at 485.721 kb on + strand at 485.722 kb on - strand at 485.841 kb on - strand at 485.937 kb on - strand at 485.959 kb on - strand, within BACOVA_03653 at 485.961 kb on - strand, within BACOVA_03653 at 486.065 kb on + strand, within BACOVA_03653 at 486.066 kb on - strand, within BACOVA_03653 at 486.083 kb on - strand, within BACOVA_03653 at 486.120 kb on + strand, within BACOVA_03653 at 486.121 kb on - strand, within BACOVA_03653 at 486.175 kb on + strand, within BACOVA_03653 at 486.176 kb on - strand, within BACOVA_03653 at 486.270 kb on + strand, within BACOVA_03653 at 486.273 kb on - strand, within BACOVA_03653 at 486.420 kb on - strand, within BACOVA_03653 at 486.478 kb on - strand, within BACOVA_03653 at 486.560 kb on - strand, within BACOVA_03653 at 487.130 kb on + strand, within BACOVA_03653 at 487.279 kb on + strand, within BACOVA_03653 at 487.279 kb on + strand, within BACOVA_03653 at 487.282 kb on - strand, within BACOVA_03653 at 487.282 kb on - strand, within BACOVA_03653 at 487.283 kb on + strand, within BACOVA_03653 at 487.284 kb on - strand, within BACOVA_03653 at 487.322 kb on + strand, within BACOVA_03653 at 487.326 kb on + strand, within BACOVA_03653 at 487.327 kb on - strand, within BACOVA_03653 at 487.467 kb on - strand, within BACOVA_03653 at 487.487 kb on + strand, within BACOVA_03653 at 487.538 kb on + strand, within BACOVA_03653 at 487.659 kb on - strand, within BACOVA_03653 at 487.677 kb on + strand, within BACOVA_03653 at 487.704 kb on + strand, within BACOVA_03653 at 487.744 kb on + strand, within BACOVA_03653 at 487.744 kb on + strand, within BACOVA_03653 at 487.745 kb on - strand, within BACOVA_03653 at 487.911 kb on - strand at 487.911 kb on - strand at 487.986 kb on + strand at 488.049 kb on + strand at 488.049 kb on + strand at 488.049 kb on + strand at 488.049 kb on + strand at 488.080 kb on + strand at 488.090 kb on + strand at 488.090 kb on + strand at 488.091 kb on - strand at 488.112 kb on + strand at 488.113 kb on - strand at 488.113 kb on - strand at 488.156 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 484,761 - BACOVA_03652 0.79 -0.8 484,765 - BACOVA_03652 0.79 +1.0 484,855 + BACOVA_03652 0.81 -2.1 484,970 - BACOVA_03652 0.84 -1.1 484,970 - BACOVA_03652 0.84 -0.6 485,138 + BACOVA_03652 0.87 -0.4 485,488 - -0.8 485,667 + -2.5 485,704 + +0.1 485,719 + +0.2 485,719 + -1.1 485,719 + -0.4 485,719 + +0.1 485,721 + -0.5 485,722 - -1.0 485,841 - -0.6 485,937 - +0.4 485,959 - BACOVA_03653 0.11 -0.1 485,961 - BACOVA_03653 0.11 -0.8 486,065 + BACOVA_03653 0.15 +0.6 486,066 - BACOVA_03653 0.15 -1.9 486,083 - BACOVA_03653 0.16 -1.1 486,120 + BACOVA_03653 0.18 +0.2 486,121 - BACOVA_03653 0.18 -0.6 486,175 + BACOVA_03653 0.20 +0.6 486,176 - BACOVA_03653 0.20 -1.0 486,270 + BACOVA_03653 0.24 -0.1 486,273 - BACOVA_03653 0.24 +0.4 486,420 - BACOVA_03653 0.30 -1.8 486,478 - BACOVA_03653 0.33 -1.1 486,560 - BACOVA_03653 0.36 -1.0 487,130 + BACOVA_03653 0.61 +0.7 487,279 + BACOVA_03653 0.67 -0.8 487,279 + BACOVA_03653 0.67 -0.4 487,282 - BACOVA_03653 0.67 -0.6 487,282 - BACOVA_03653 0.67 -0.1 487,283 + BACOVA_03653 0.67 +1.9 487,284 - BACOVA_03653 0.67 -1.0 487,322 + BACOVA_03653 0.69 -0.6 487,326 + BACOVA_03653 0.69 -0.1 487,327 - BACOVA_03653 0.69 -1.0 487,467 - BACOVA_03653 0.75 -0.6 487,487 + BACOVA_03653 0.76 -0.8 487,538 + BACOVA_03653 0.78 -0.8 487,659 - BACOVA_03653 0.83 +0.6 487,677 + BACOVA_03653 0.84 -0.1 487,704 + BACOVA_03653 0.85 -1.0 487,744 + BACOVA_03653 0.87 -0.8 487,744 + BACOVA_03653 0.87 -1.0 487,745 - BACOVA_03653 0.87 -1.3 487,911 - +0.0 487,911 - -0.4 487,986 + -2.1 488,049 + +0.0 488,049 + -0.4 488,049 + +1.0 488,049 + +0.6 488,080 + -0.3 488,090 + +0.6 488,090 + +0.6 488,091 - -0.6 488,112 + -0.5 488,113 - +1.3 488,113 - +1.1 488,156 + +0.9
Or see this region's nucleotide sequence