Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03446 and BACOVA_03447 are separated by 21 nucleotides BACOVA_03447 and BACOVA_03448 are separated by 361 nucleotides BACOVA_03448 and BACOVA_03449 are separated by 184 nucleotides
BACOVA_03446: BACOVA_03446 - hypothetical protein, at 186,358 to 188,361
_03446
BACOVA_03447: BACOVA_03447 - hypothetical protein, at 188,383 to 188,802
_03447
BACOVA_03448: BACOVA_03448 - hypothetical protein, at 189,164 to 189,289
_03448
BACOVA_03449: BACOVA_03449 - hypothetical protein, at 189,474 to 192,044
_03449
Position (kb) 188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.401 kb on + strand, within BACOVA_03446 at 187.401 kb on + strand, within BACOVA_03446 at 187.401 kb on + strand, within BACOVA_03446 at 187.401 kb on + strand, within BACOVA_03446 at 187.402 kb on - strand, within BACOVA_03446 at 187.402 kb on - strand, within BACOVA_03446 at 187.402 kb on - strand, within BACOVA_03446 at 187.402 kb on - strand, within BACOVA_03446 at 187.541 kb on + strand, within BACOVA_03446 at 187.541 kb on + strand, within BACOVA_03446 at 187.542 kb on - strand, within BACOVA_03446 at 187.542 kb on - strand, within BACOVA_03446 at 187.578 kb on + strand, within BACOVA_03446 at 187.579 kb on - strand, within BACOVA_03446 at 187.584 kb on + strand, within BACOVA_03446 at 187.633 kb on + strand, within BACOVA_03446 at 187.726 kb on + strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.727 kb on - strand, within BACOVA_03446 at 187.755 kb on + strand, within BACOVA_03446 at 187.755 kb on + strand, within BACOVA_03446 at 187.787 kb on - strand, within BACOVA_03446 at 187.803 kb on + strand, within BACOVA_03446 at 187.803 kb on + strand, within BACOVA_03446 at 187.803 kb on + strand, within BACOVA_03446 at 187.815 kb on + strand, within BACOVA_03446 at 187.816 kb on - strand, within BACOVA_03446 at 187.816 kb on - strand, within BACOVA_03446 at 187.858 kb on + strand, within BACOVA_03446 at 187.858 kb on + strand, within BACOVA_03446 at 187.918 kb on - strand, within BACOVA_03446 at 187.918 kb on - strand, within BACOVA_03446 at 187.937 kb on + strand, within BACOVA_03446 at 187.937 kb on + strand, within BACOVA_03446 at 187.945 kb on + strand, within BACOVA_03446 at 187.946 kb on - strand, within BACOVA_03446 at 187.947 kb on + strand, within BACOVA_03446 at 187.976 kb on + strand, within BACOVA_03446 at 187.987 kb on - strand, within BACOVA_03446 at 188.016 kb on + strand, within BACOVA_03446 at 188.016 kb on + strand, within BACOVA_03446 at 188.022 kb on + strand, within BACOVA_03446 at 188.082 kb on + strand, within BACOVA_03446 at 188.089 kb on - strand, within BACOVA_03446 at 188.118 kb on + strand, within BACOVA_03446 at 188.137 kb on + strand, within BACOVA_03446 at 188.165 kb on - strand at 188.165 kb on - strand at 188.170 kb on - strand at 188.170 kb on - strand at 188.184 kb on + strand at 188.259 kb on + strand at 188.360 kb on - strand at 188.368 kb on - strand at 188.368 kb on - strand at 188.378 kb on + strand at 188.378 kb on + strand at 188.379 kb on - strand at 188.379 kb on - strand at 188.382 kb on - strand at 188.470 kb on + strand, within BACOVA_03447 at 188.471 kb on - strand, within BACOVA_03447 at 188.512 kb on - strand, within BACOVA_03447 at 188.515 kb on + strand, within BACOVA_03447 at 188.527 kb on + strand, within BACOVA_03447 at 188.575 kb on + strand, within BACOVA_03447 at 188.576 kb on - strand, within BACOVA_03447 at 188.577 kb on + strand, within BACOVA_03447 at 188.583 kb on + strand, within BACOVA_03447 at 188.627 kb on - strand, within BACOVA_03447 at 188.661 kb on + strand, within BACOVA_03447 at 188.661 kb on + strand, within BACOVA_03447 at 188.661 kb on + strand, within BACOVA_03447 at 188.662 kb on - strand, within BACOVA_03447 at 188.672 kb on + strand, within BACOVA_03447 at 188.712 kb on + strand, within BACOVA_03447 at 188.714 kb on + strand, within BACOVA_03447 at 188.714 kb on + strand, within BACOVA_03447 at 188.714 kb on + strand, within BACOVA_03447 at 188.715 kb on - strand, within BACOVA_03447 at 188.715 kb on - strand, within BACOVA_03447 at 188.718 kb on + strand, within BACOVA_03447 at 188.718 kb on + strand, within BACOVA_03447 at 188.718 kb on + strand, within BACOVA_03447 at 188.719 kb on - strand, within BACOVA_03447 at 188.739 kb on - strand, within BACOVA_03447 at 188.743 kb on - strand, within BACOVA_03447 at 188.753 kb on + strand, within BACOVA_03447 at 188.754 kb on - strand, within BACOVA_03447 at 188.800 kb on + strand at 188.800 kb on + strand at 188.801 kb on - strand at 188.809 kb on - strand at 188.842 kb on - strand at 188.842 kb on - strand at 188.842 kb on - strand at 188.842 kb on - strand at 188.870 kb on + strand at 188.875 kb on + strand at 188.876 kb on - strand at 188.894 kb on - strand at 188.894 kb on - strand at 188.917 kb on - strand at 188.943 kb on + strand at 188.944 kb on - strand at 188.975 kb on + strand at 188.976 kb on - strand at 188.976 kb on - strand at 188.978 kb on - strand at 188.996 kb on - strand at 189.015 kb on + strand at 189.043 kb on + strand at 189.133 kb on + strand at 189.137 kb on + strand at 189.138 kb on - strand at 189.138 kb on - strand at 189.161 kb on + strand at 189.161 kb on + strand at 189.175 kb on + strand at 189.177 kb on + strand, within BACOVA_03448 at 189.177 kb on + strand, within BACOVA_03448 at 189.181 kb on + strand, within BACOVA_03448 at 189.192 kb on + strand, within BACOVA_03448 at 189.233 kb on - strand, within BACOVA_03448 at 189.276 kb on + strand, within BACOVA_03448 at 189.277 kb on - strand at 189.279 kb on + strand at 189.279 kb on + strand at 189.290 kb on + strand at 189.290 kb on + strand at 189.291 kb on - strand at 189.300 kb on - strand at 189.300 kb on - strand at 189.318 kb on + strand at 189.367 kb on + strand at 189.393 kb on + strand at 189.394 kb on - strand at 189.412 kb on - strand at 189.415 kb on + strand at 189.416 kb on - strand at 189.433 kb on + strand at 189.440 kb on + strand at 189.527 kb on + strand at 189.539 kb on - strand at 189.622 kb on - strand at 189.673 kb on + strand at 189.674 kb on - strand at 189.675 kb on + strand at 189.675 kb on + strand at 189.675 kb on + strand at 189.675 kb on + strand at 189.675 kb on + strand at 189.675 kb on + strand at 189.676 kb on - strand at 189.682 kb on + strand at 189.684 kb on + strand at 189.705 kb on + strand at 189.710 kb on + strand at 189.710 kb on + strand at 189.711 kb on - strand at 189.711 kb on - strand at 189.758 kb on + strand, within BACOVA_03449 at 189.758 kb on + strand, within BACOVA_03449 at 189.759 kb on - strand, within BACOVA_03449 at 189.759 kb on - strand, within BACOVA_03449 at 189.759 kb on - strand, within BACOVA_03449 at 189.802 kb on - strand, within BACOVA_03449
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 187,401 + BACOVA_03446 0.52 -1.6 187,401 + BACOVA_03446 0.52 -0.4 187,401 + BACOVA_03446 0.52 +1.1 187,401 + BACOVA_03446 0.52 +0.2 187,402 - BACOVA_03446 0.52 +0.4 187,402 - BACOVA_03446 0.52 -0.3 187,402 - BACOVA_03446 0.52 +0.6 187,402 - BACOVA_03446 0.52 -1.1 187,541 + BACOVA_03446 0.59 -0.8 187,541 + BACOVA_03446 0.59 +0.1 187,542 - BACOVA_03446 0.59 +1.2 187,542 - BACOVA_03446 0.59 +2.3 187,578 + BACOVA_03446 0.61 -0.1 187,579 - BACOVA_03446 0.61 -0.5 187,584 + BACOVA_03446 0.61 -1.0 187,633 + BACOVA_03446 0.64 +0.2 187,726 + BACOVA_03446 0.68 -0.5 187,727 - BACOVA_03446 0.68 -0.9 187,727 - BACOVA_03446 0.68 -0.0 187,727 - BACOVA_03446 0.68 -1.0 187,727 - BACOVA_03446 0.68 -1.4 187,727 - BACOVA_03446 0.68 +1.7 187,755 + BACOVA_03446 0.70 +0.9 187,755 + BACOVA_03446 0.70 +2.2 187,787 - BACOVA_03446 0.71 +2.1 187,803 + BACOVA_03446 0.72 +0.4 187,803 + BACOVA_03446 0.72 +0.3 187,803 + BACOVA_03446 0.72 +2.0 187,815 + BACOVA_03446 0.73 +0.9 187,816 - BACOVA_03446 0.73 +0.1 187,816 - BACOVA_03446 0.73 -1.3 187,858 + BACOVA_03446 0.75 +2.3 187,858 + BACOVA_03446 0.75 +1.5 187,918 - BACOVA_03446 0.78 -0.5 187,918 - BACOVA_03446 0.78 +0.6 187,937 + BACOVA_03446 0.79 +1.5 187,937 + BACOVA_03446 0.79 -1.1 187,945 + BACOVA_03446 0.79 +1.6 187,946 - BACOVA_03446 0.79 -0.3 187,947 + BACOVA_03446 0.79 +0.4 187,976 + BACOVA_03446 0.81 +2.4 187,987 - BACOVA_03446 0.81 -0.1 188,016 + BACOVA_03446 0.83 -0.5 188,016 + BACOVA_03446 0.83 +1.3 188,022 + BACOVA_03446 0.83 -0.1 188,082 + BACOVA_03446 0.86 -0.8 188,089 - BACOVA_03446 0.86 -0.4 188,118 + BACOVA_03446 0.88 +0.8 188,137 + BACOVA_03446 0.89 -1.3 188,165 - +0.4 188,165 - +0.3 188,170 - +0.1 188,170 - -0.4 188,184 + +0.9 188,259 + +1.3 188,360 - -1.0 188,368 - +1.2 188,368 - +0.6 188,378 + +1.6 188,378 + +0.3 188,379 - +1.8 188,379 - +1.7 188,382 - +1.8 188,470 + BACOVA_03447 0.21 -0.3 188,471 - BACOVA_03447 0.21 +0.2 188,512 - BACOVA_03447 0.31 -0.2 188,515 + BACOVA_03447 0.31 +0.4 188,527 + BACOVA_03447 0.34 -0.7 188,575 + BACOVA_03447 0.46 +0.4 188,576 - BACOVA_03447 0.46 -2.0 188,577 + BACOVA_03447 0.46 +0.3 188,583 + BACOVA_03447 0.48 -0.4 188,627 - BACOVA_03447 0.58 +0.4 188,661 + BACOVA_03447 0.66 -0.3 188,661 + BACOVA_03447 0.66 +0.3 188,661 + BACOVA_03447 0.66 +0.8 188,662 - BACOVA_03447 0.66 +0.2 188,672 + BACOVA_03447 0.69 +1.6 188,712 + BACOVA_03447 0.78 -1.4 188,714 + BACOVA_03447 0.79 -0.6 188,714 + BACOVA_03447 0.79 +1.3 188,714 + BACOVA_03447 0.79 +2.0 188,715 - BACOVA_03447 0.79 -2.0 188,715 - BACOVA_03447 0.79 -1.0 188,718 + BACOVA_03447 0.80 -0.3 188,718 + BACOVA_03447 0.80 +0.2 188,718 + BACOVA_03447 0.80 +2.2 188,719 - BACOVA_03447 0.80 +0.9 188,739 - BACOVA_03447 0.85 -0.6 188,743 - BACOVA_03447 0.86 +1.2 188,753 + BACOVA_03447 0.88 -1.2 188,754 - BACOVA_03447 0.88 +0.3 188,800 + +0.1 188,800 + -1.6 188,801 - -0.7 188,809 - -1.2 188,842 - -1.5 188,842 - -0.3 188,842 - +1.6 188,842 - +0.7 188,870 + +0.0 188,875 + +0.9 188,876 - +0.0 188,894 - -0.9 188,894 - -3.1 188,917 - +0.2 188,943 + +0.6 188,944 - -2.4 188,975 + +0.2 188,976 - -0.2 188,976 - -1.1 188,978 - -0.7 188,996 - +0.0 189,015 + +0.2 189,043 + +2.4 189,133 + -0.4 189,137 + -1.2 189,138 - -0.4 189,138 - -0.9 189,161 + -0.7 189,161 + +1.3 189,175 + -0.4 189,177 + BACOVA_03448 0.10 +0.0 189,177 + BACOVA_03448 0.10 +0.6 189,181 + BACOVA_03448 0.13 +0.0 189,192 + BACOVA_03448 0.22 +1.8 189,233 - BACOVA_03448 0.55 +0.7 189,276 + BACOVA_03448 0.89 +1.4 189,277 - -0.1 189,279 + +0.4 189,279 + -2.4 189,290 + -1.9 189,290 + +0.3 189,291 - -1.2 189,300 - -0.3 189,300 - +0.6 189,318 + +1.2 189,367 + -0.4 189,393 + +1.5 189,394 - -1.3 189,412 - -0.9 189,415 + +0.3 189,416 - +1.2 189,433 + +0.8 189,440 + -0.4 189,527 + -0.0 189,539 - +2.4 189,622 - +2.3 189,673 + +0.2 189,674 - +1.2 189,675 + -0.4 189,675 + +0.3 189,675 + +0.6 189,675 + -0.3 189,675 + -1.0 189,675 + -0.7 189,676 - -0.1 189,682 + +0.8 189,684 + +1.0 189,705 + -1.2 189,710 + +2.7 189,710 + +1.6 189,711 - +1.3 189,711 - -0.0 189,758 + BACOVA_03449 0.11 -0.2 189,758 + BACOVA_03449 0.11 +0.3 189,759 - BACOVA_03449 0.11 -0.3 189,759 - BACOVA_03449 0.11 -1.7 189,759 - BACOVA_03449 0.11 -2.1 189,802 - BACOVA_03449 0.13 +0.4
Or see this region's nucleotide sequence