Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03329 and BACOVA_03330 are separated by 34 nucleotides BACOVA_03330 and BACOVA_03331 are separated by 112 nucleotides BACOVA_03331 and BACOVA_03332 are separated by 302 nucleotides
BACOVA_03329: BACOVA_03329 - arylsulfatase, at 17,586 to 18,962
_03329
BACOVA_03330: BACOVA_03330 - arylsulfatase, at 18,997 to 20,376
_03330
BACOVA_03331: BACOVA_03331 - hypothetical protein, at 20,489 to 20,635
_03331
BACOVA_03332: BACOVA_03332 - arylsulfatase, at 20,938 to 22,455
_03332
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 18.027 kb on + strand, within BACOVA_03329 at 18.028 kb on - strand, within BACOVA_03329 at 18.028 kb on - strand, within BACOVA_03329 at 18.050 kb on - strand, within BACOVA_03329 at 18.124 kb on - strand, within BACOVA_03329 at 18.172 kb on - strand, within BACOVA_03329 at 18.172 kb on - strand, within BACOVA_03329 at 18.198 kb on + strand, within BACOVA_03329 at 18.198 kb on + strand, within BACOVA_03329 at 18.198 kb on + strand, within BACOVA_03329 at 18.198 kb on + strand, within BACOVA_03329 at 18.199 kb on - strand, within BACOVA_03329 at 18.208 kb on - strand, within BACOVA_03329 at 18.209 kb on + strand, within BACOVA_03329 at 18.209 kb on + strand, within BACOVA_03329 at 18.210 kb on - strand, within BACOVA_03329 at 18.221 kb on + strand, within BACOVA_03329 at 18.251 kb on - strand, within BACOVA_03329 at 18.251 kb on - strand, within BACOVA_03329 at 18.259 kb on - strand, within BACOVA_03329 at 18.264 kb on - strand, within BACOVA_03329 at 18.264 kb on - strand, within BACOVA_03329 at 18.310 kb on - strand, within BACOVA_03329 at 18.329 kb on + strand, within BACOVA_03329 at 18.351 kb on - strand, within BACOVA_03329 at 18.351 kb on - strand, within BACOVA_03329 at 18.356 kb on - strand, within BACOVA_03329 at 18.356 kb on - strand, within BACOVA_03329 at 18.490 kb on + strand, within BACOVA_03329 at 18.534 kb on + strand, within BACOVA_03329 at 18.536 kb on + strand, within BACOVA_03329 at 18.536 kb on + strand, within BACOVA_03329 at 18.628 kb on - strand, within BACOVA_03329 at 18.709 kb on + strand, within BACOVA_03329 at 18.710 kb on - strand, within BACOVA_03329 at 18.710 kb on - strand, within BACOVA_03329 at 18.717 kb on - strand, within BACOVA_03329 at 18.724 kb on - strand, within BACOVA_03329 at 18.724 kb on - strand, within BACOVA_03329 at 18.744 kb on - strand, within BACOVA_03329 at 18.786 kb on + strand, within BACOVA_03329 at 18.853 kb on - strand at 18.870 kb on + strand at 18.890 kb on + strand at 18.890 kb on + strand at 18.890 kb on + strand at 18.891 kb on - strand at 18.902 kb on - strand at 18.902 kb on - strand at 18.902 kb on - strand at 18.902 kb on - strand at 18.906 kb on + strand at 18.938 kb on + strand at 18.952 kb on + strand at 18.955 kb on + strand at 18.992 kb on - strand at 19.014 kb on + strand at 19.066 kb on - strand at 19.078 kb on - strand at 19.081 kb on - strand at 19.083 kb on - strand at 19.083 kb on - strand at 19.086 kb on - strand at 19.121 kb on + strand at 19.121 kb on + strand at 19.122 kb on - strand at 19.122 kb on - strand at 19.160 kb on + strand, within BACOVA_03330 at 19.160 kb on + strand, within BACOVA_03330 at 19.161 kb on - strand, within BACOVA_03330 at 19.161 kb on - strand, within BACOVA_03330 at 19.202 kb on - strand, within BACOVA_03330 at 19.202 kb on - strand, within BACOVA_03330 at 19.243 kb on + strand, within BACOVA_03330 at 19.251 kb on + strand, within BACOVA_03330 at 19.252 kb on - strand, within BACOVA_03330 at 19.252 kb on - strand, within BACOVA_03330 at 19.252 kb on - strand, within BACOVA_03330 at 19.255 kb on + strand, within BACOVA_03330 at 19.255 kb on + strand, within BACOVA_03330 at 19.287 kb on + strand, within BACOVA_03330 at 19.288 kb on - strand, within BACOVA_03330 at 19.324 kb on + strand, within BACOVA_03330 at 19.367 kb on + strand, within BACOVA_03330 at 19.371 kb on + strand, within BACOVA_03330 at 19.372 kb on - strand, within BACOVA_03330 at 19.387 kb on - strand, within BACOVA_03330 at 19.428 kb on + strand, within BACOVA_03330 at 19.448 kb on - strand, within BACOVA_03330 at 19.448 kb on - strand, within BACOVA_03330 at 19.448 kb on - strand, within BACOVA_03330 at 19.452 kb on + strand, within BACOVA_03330 at 19.453 kb on - strand, within BACOVA_03330 at 19.477 kb on + strand, within BACOVA_03330 at 19.518 kb on + strand, within BACOVA_03330 at 19.621 kb on + strand, within BACOVA_03330 at 19.621 kb on + strand, within BACOVA_03330 at 19.634 kb on - strand, within BACOVA_03330 at 19.634 kb on - strand, within BACOVA_03330 at 19.677 kb on + strand, within BACOVA_03330 at 19.677 kb on + strand, within BACOVA_03330 at 19.677 kb on + strand, within BACOVA_03330 at 19.678 kb on - strand, within BACOVA_03330 at 19.678 kb on - strand, within BACOVA_03330 at 19.849 kb on - strand, within BACOVA_03330 at 19.875 kb on + strand, within BACOVA_03330 at 19.881 kb on + strand, within BACOVA_03330 at 19.913 kb on + strand, within BACOVA_03330 at 19.934 kb on + strand, within BACOVA_03330 at 19.935 kb on - strand, within BACOVA_03330 at 19.940 kb on + strand, within BACOVA_03330 at 19.940 kb on + strand, within BACOVA_03330 at 19.968 kb on + strand, within BACOVA_03330 at 19.968 kb on + strand, within BACOVA_03330 at 19.968 kb on + strand, within BACOVA_03330 at 19.968 kb on + strand, within BACOVA_03330 at 19.968 kb on + strand, within BACOVA_03330 at 19.969 kb on - strand, within BACOVA_03330 at 19.969 kb on - strand, within BACOVA_03330 at 19.969 kb on - strand, within BACOVA_03330 at 19.969 kb on - strand, within BACOVA_03330 at 19.972 kb on + strand, within BACOVA_03330 at 19.972 kb on + strand, within BACOVA_03330 at 19.973 kb on - strand, within BACOVA_03330 at 19.978 kb on + strand, within BACOVA_03330 at 19.978 kb on + strand, within BACOVA_03330 at 20.080 kb on + strand, within BACOVA_03330 at 20.080 kb on + strand, within BACOVA_03330 at 20.080 kb on + strand, within BACOVA_03330 at 20.081 kb on - strand, within BACOVA_03330 at 20.094 kb on + strand, within BACOVA_03330 at 20.094 kb on + strand, within BACOVA_03330 at 20.095 kb on - strand, within BACOVA_03330 at 20.151 kb on + strand, within BACOVA_03330 at 20.169 kb on + strand, within BACOVA_03330 at 20.192 kb on + strand, within BACOVA_03330 at 20.195 kb on - strand, within BACOVA_03330 at 20.195 kb on - strand, within BACOVA_03330 at 20.227 kb on - strand, within BACOVA_03330 at 20.248 kb on + strand at 20.248 kb on + strand at 20.249 kb on - strand at 20.253 kb on + strand at 20.253 kb on + strand at 20.254 kb on - strand at 20.254 kb on - strand at 20.254 kb on - strand at 20.323 kb on - strand at 20.372 kb on + strand at 20.373 kb on - strand at 20.374 kb on + strand at 20.375 kb on - strand at 20.474 kb on + strand at 20.477 kb on - strand at 20.481 kb on + strand at 20.497 kb on + strand at 20.612 kb on - strand, within BACOVA_03331 at 20.633 kb on + strand at 20.653 kb on + strand at 20.653 kb on + strand at 20.654 kb on - strand at 20.654 kb on - strand at 20.679 kb on + strand at 20.680 kb on - strand at 20.680 kb on - strand at 20.684 kb on - strand at 20.684 kb on - strand at 20.741 kb on + strand at 20.741 kb on + strand at 20.742 kb on - strand at 20.742 kb on - strand at 20.794 kb on + strand at 20.795 kb on - strand at 20.795 kb on - strand at 20.859 kb on + strand at 20.859 kb on + strand at 20.894 kb on + strand at 20.895 kb on - strand at 20.899 kb on + strand at 20.900 kb on + strand at 20.900 kb on - strand at 20.901 kb on + strand at 20.902 kb on - strand at 20.902 kb on - strand at 20.916 kb on - strand at 20.923 kb on + strand at 20.927 kb on - strand at 20.935 kb on + strand at 20.935 kb on + strand at 20.935 kb on + strand at 20.936 kb on - strand at 20.938 kb on - strand at 20.948 kb on + strand at 20.974 kb on - strand at 21.011 kb on + strand at 21.012 kb on - strand at 21.012 kb on - strand at 21.015 kb on + strand at 21.017 kb on + strand at 21.085 kb on - strand at 21.121 kb on - strand, within BACOVA_03332 at 21.164 kb on - strand, within BACOVA_03332 at 21.184 kb on + strand, within BACOVA_03332 at 21.290 kb on - strand, within BACOVA_03332 at 21.304 kb on - strand, within BACOVA_03332 at 21.310 kb on - strand, within BACOVA_03332 at 21.339 kb on + strand, within BACOVA_03332 at 21.339 kb on + strand, within BACOVA_03332 at 21.340 kb on - strand, within BACOVA_03332 at 21.340 kb on - strand, within BACOVA_03332 at 21.340 kb on - strand, within BACOVA_03332 at 21.340 kb on - strand, within BACOVA_03332 at 21.340 kb on - strand, within BACOVA_03332
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 18,027 + BACOVA_03329 0.32 +1.2 18,028 - BACOVA_03329 0.32 +0.3 18,028 - BACOVA_03329 0.32 +0.3 18,050 - BACOVA_03329 0.34 -1.0 18,124 - BACOVA_03329 0.39 -0.4 18,172 - BACOVA_03329 0.43 -1.6 18,172 - BACOVA_03329 0.43 -0.6 18,198 + BACOVA_03329 0.44 +1.2 18,198 + BACOVA_03329 0.44 +1.9 18,198 + BACOVA_03329 0.44 +0.9 18,198 + BACOVA_03329 0.44 -0.7 18,199 - BACOVA_03329 0.45 +0.5 18,208 - BACOVA_03329 0.45 -0.9 18,209 + BACOVA_03329 0.45 +1.0 18,209 + BACOVA_03329 0.45 +0.3 18,210 - BACOVA_03329 0.45 -0.6 18,221 + BACOVA_03329 0.46 -0.7 18,251 - BACOVA_03329 0.48 -3.5 18,251 - BACOVA_03329 0.48 -0.1 18,259 - BACOVA_03329 0.49 -0.0 18,264 - BACOVA_03329 0.49 -0.5 18,264 - BACOVA_03329 0.49 -0.9 18,310 - BACOVA_03329 0.53 -0.3 18,329 + BACOVA_03329 0.54 +0.9 18,351 - BACOVA_03329 0.56 -0.0 18,351 - BACOVA_03329 0.56 +0.3 18,356 - BACOVA_03329 0.56 +0.6 18,356 - BACOVA_03329 0.56 -0.9 18,490 + BACOVA_03329 0.66 -0.6 18,534 + BACOVA_03329 0.69 -0.7 18,536 + BACOVA_03329 0.69 -0.8 18,536 + BACOVA_03329 0.69 -0.4 18,628 - BACOVA_03329 0.76 +0.3 18,709 + BACOVA_03329 0.82 -0.4 18,710 - BACOVA_03329 0.82 -1.0 18,710 - BACOVA_03329 0.82 +3.1 18,717 - BACOVA_03329 0.82 -0.4 18,724 - BACOVA_03329 0.83 +1.8 18,724 - BACOVA_03329 0.83 +0.1 18,744 - BACOVA_03329 0.84 -3.4 18,786 + BACOVA_03329 0.87 -0.1 18,853 - -0.6 18,870 + +0.1 18,890 + -0.1 18,890 + -1.8 18,890 + +1.4 18,891 - +0.3 18,902 - -1.5 18,902 - +0.4 18,902 - +1.6 18,902 - +0.6 18,906 + +0.3 18,938 + +1.8 18,952 + +1.0 18,955 + -0.9 18,992 - -1.6 19,014 + +0.7 19,066 - +0.2 19,078 - -1.0 19,081 - -0.6 19,083 - +2.1 19,083 - -0.5 19,086 - -0.1 19,121 + -0.7 19,121 + +1.9 19,122 - -1.2 19,122 - -0.7 19,160 + BACOVA_03330 0.12 -1.2 19,160 + BACOVA_03330 0.12 -1.8 19,161 - BACOVA_03330 0.12 +0.7 19,161 - BACOVA_03330 0.12 -1.7 19,202 - BACOVA_03330 0.15 -0.8 19,202 - BACOVA_03330 0.15 -0.6 19,243 + BACOVA_03330 0.18 -0.4 19,251 + BACOVA_03330 0.18 +0.5 19,252 - BACOVA_03330 0.18 +1.1 19,252 - BACOVA_03330 0.18 -0.3 19,252 - BACOVA_03330 0.18 +1.1 19,255 + BACOVA_03330 0.19 -1.7 19,255 + BACOVA_03330 0.19 -1.1 19,287 + BACOVA_03330 0.21 -0.5 19,288 - BACOVA_03330 0.21 -0.7 19,324 + BACOVA_03330 0.24 -0.3 19,367 + BACOVA_03330 0.27 -1.0 19,371 + BACOVA_03330 0.27 -0.4 19,372 - BACOVA_03330 0.27 +1.3 19,387 - BACOVA_03330 0.28 +0.8 19,428 + BACOVA_03330 0.31 -2.0 19,448 - BACOVA_03330 0.33 -1.3 19,448 - BACOVA_03330 0.33 -1.0 19,448 - BACOVA_03330 0.33 +0.2 19,452 + BACOVA_03330 0.33 -3.1 19,453 - BACOVA_03330 0.33 -1.1 19,477 + BACOVA_03330 0.35 -0.5 19,518 + BACOVA_03330 0.38 +1.2 19,621 + BACOVA_03330 0.45 +0.5 19,621 + BACOVA_03330 0.45 +1.9 19,634 - BACOVA_03330 0.46 -0.6 19,634 - BACOVA_03330 0.46 +0.9 19,677 + BACOVA_03330 0.49 +0.9 19,677 + BACOVA_03330 0.49 -0.1 19,677 + BACOVA_03330 0.49 -0.4 19,678 - BACOVA_03330 0.49 +2.1 19,678 - BACOVA_03330 0.49 +0.7 19,849 - BACOVA_03330 0.62 -1.0 19,875 + BACOVA_03330 0.64 +1.2 19,881 + BACOVA_03330 0.64 +1.3 19,913 + BACOVA_03330 0.66 -0.7 19,934 + BACOVA_03330 0.68 +1.7 19,935 - BACOVA_03330 0.68 +1.0 19,940 + BACOVA_03330 0.68 -0.1 19,940 + BACOVA_03330 0.68 -0.3 19,968 + BACOVA_03330 0.70 -1.7 19,968 + BACOVA_03330 0.70 -0.3 19,968 + BACOVA_03330 0.70 +0.8 19,968 + BACOVA_03330 0.70 -4.7 19,968 + BACOVA_03330 0.70 +0.2 19,969 - BACOVA_03330 0.70 -0.3 19,969 - BACOVA_03330 0.70 +0.1 19,969 - BACOVA_03330 0.70 -0.5 19,969 - BACOVA_03330 0.70 -0.4 19,972 + BACOVA_03330 0.71 -1.5 19,972 + BACOVA_03330 0.71 -0.7 19,973 - BACOVA_03330 0.71 +1.1 19,978 + BACOVA_03330 0.71 -0.3 19,978 + BACOVA_03330 0.71 -0.0 20,080 + BACOVA_03330 0.78 +2.1 20,080 + BACOVA_03330 0.78 +0.5 20,080 + BACOVA_03330 0.78 +0.0 20,081 - BACOVA_03330 0.79 +0.6 20,094 + BACOVA_03330 0.79 -1.5 20,094 + BACOVA_03330 0.79 +0.2 20,095 - BACOVA_03330 0.80 -0.3 20,151 + BACOVA_03330 0.84 +0.6 20,169 + BACOVA_03330 0.85 -3.1 20,192 + BACOVA_03330 0.87 +1.9 20,195 - BACOVA_03330 0.87 +0.2 20,195 - BACOVA_03330 0.87 -1.0 20,227 - BACOVA_03330 0.89 -1.3 20,248 + -0.1 20,248 + +0.5 20,249 - +0.4 20,253 + -0.3 20,253 + +2.3 20,254 - +0.6 20,254 - -0.8 20,254 - +0.4 20,323 - -1.0 20,372 + +2.2 20,373 - -0.8 20,374 + -0.6 20,375 - -0.8 20,474 + -0.4 20,477 - -0.4 20,481 + +1.2 20,497 + +0.8 20,612 - BACOVA_03331 0.84 +0.6 20,633 + -0.3 20,653 + +1.1 20,653 + -0.1 20,654 - -1.5 20,654 - +0.4 20,679 + -1.6 20,680 - +1.1 20,680 - -2.4 20,684 - -1.4 20,684 - -1.4 20,741 + +1.0 20,741 + +0.9 20,742 - +0.6 20,742 - +0.2 20,794 + +2.2 20,795 - +0.2 20,795 - +0.6 20,859 + -0.4 20,859 + -0.8 20,894 + -1.9 20,895 - -0.9 20,899 + +0.7 20,900 + -0.7 20,900 - +2.2 20,901 + +1.1 20,902 - -0.1 20,902 - -0.5 20,916 - +2.2 20,923 + -0.5 20,927 - -0.7 20,935 + -1.8 20,935 + -0.8 20,935 + +1.1 20,936 - -1.1 20,938 - -0.1 20,948 + +0.0 20,974 - +1.9 21,011 + +0.8 21,012 - -2.5 21,012 - -1.5 21,015 + -0.3 21,017 + -2.7 21,085 - -1.3 21,121 - BACOVA_03332 0.12 +1.1 21,164 - BACOVA_03332 0.15 -1.1 21,184 + BACOVA_03332 0.16 -1.4 21,290 - BACOVA_03332 0.23 -0.0 21,304 - BACOVA_03332 0.24 +0.2 21,310 - BACOVA_03332 0.25 -0.4 21,339 + BACOVA_03332 0.26 -0.2 21,339 + BACOVA_03332 0.26 +1.4 21,340 - BACOVA_03332 0.26 +0.2 21,340 - BACOVA_03332 0.26 -0.7 21,340 - BACOVA_03332 0.26 -0.5 21,340 - BACOVA_03332 0.26 -1.5 21,340 - BACOVA_03332 0.26 -0.8
Or see this region's nucleotide sequence