Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03240 and BACOVA_03241 are separated by 23 nucleotides BACOVA_03241 and BACOVA_03242 are separated by 142 nucleotides BACOVA_03242 and BACOVA_03243 are separated by 331 nucleotides BACOVA_03243 and BACOVA_03244 overlap by 4 nucleotides BACOVA_03244 and BACOVA_03245 are separated by 20 nucleotides BACOVA_03245 and BACOVA_03246 are separated by 35 nucleotides
BACOVA_03240: BACOVA_03240 - outer membrane efflux protein, at 332,733 to 334,103
_03240
BACOVA_03241: BACOVA_03241 - hypothetical protein, at 334,127 to 334,372
_03241
BACOVA_03242: BACOVA_03242 - putative DNA-binding protein, at 334,515 to 334,994
_03242
BACOVA_03243: BACOVA_03243 - hypothetical protein, at 335,326 to 335,592
_03243
BACOVA_03244: BACOVA_03244 - hypothetical protein, at 335,589 to 335,723
_03244
BACOVA_03245: BACOVA_03245 - hypothetical protein, at 335,744 to 335,947
_03245
BACOVA_03246: BACOVA_03246 - putative DNA-binding protein, at 335,983 to 336,582
_03246
Position (kb) 334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 333.554 kb on + strand, within BACOVA_03240 at 333.627 kb on - strand, within BACOVA_03240 at 333.634 kb on + strand, within BACOVA_03240 at 333.635 kb on - strand, within BACOVA_03240 at 333.659 kb on + strand, within BACOVA_03240 at 333.663 kb on + strand, within BACOVA_03240 at 333.664 kb on - strand, within BACOVA_03240 at 333.664 kb on - strand, within BACOVA_03240 at 333.664 kb on - strand, within BACOVA_03240 at 333.777 kb on - strand, within BACOVA_03240 at 333.781 kb on + strand, within BACOVA_03240 at 333.781 kb on + strand, within BACOVA_03240 at 333.873 kb on - strand, within BACOVA_03240 at 333.873 kb on - strand, within BACOVA_03240 at 333.990 kb on + strand at 333.991 kb on - strand at 334.023 kb on + strand at 334.056 kb on + strand at 334.056 kb on + strand at 334.057 kb on - strand at 334.065 kb on + strand at 334.066 kb on - strand at 334.066 kb on - strand at 334.074 kb on + strand at 334.075 kb on - strand at 334.105 kb on - strand at 334.160 kb on + strand, within BACOVA_03241 at 334.175 kb on - strand, within BACOVA_03241 at 334.187 kb on - strand, within BACOVA_03241 at 334.235 kb on + strand, within BACOVA_03241 at 334.257 kb on - strand, within BACOVA_03241 at 334.257 kb on - strand, within BACOVA_03241 at 334.279 kb on + strand, within BACOVA_03241 at 334.279 kb on + strand, within BACOVA_03241 at 334.279 kb on + strand, within BACOVA_03241 at 334.298 kb on - strand, within BACOVA_03241 at 334.379 kb on - strand at 334.384 kb on - strand at 334.401 kb on + strand at 334.402 kb on - strand at 334.408 kb on - strand at 334.439 kb on - strand at 334.497 kb on - strand at 334.516 kb on + strand at 334.517 kb on - strand at 334.637 kb on + strand, within BACOVA_03242 at 334.638 kb on - strand, within BACOVA_03242 at 334.641 kb on + strand, within BACOVA_03242 at 334.642 kb on - strand, within BACOVA_03242 at 334.703 kb on + strand, within BACOVA_03242 at 334.830 kb on + strand, within BACOVA_03242 at 334.869 kb on - strand, within BACOVA_03242 at 334.927 kb on - strand, within BACOVA_03242 at 334.931 kb on - strand, within BACOVA_03242 at 334.931 kb on - strand, within BACOVA_03242 at 334.982 kb on - strand at 334.985 kb on + strand at 334.986 kb on - strand at 335.028 kb on + strand at 335.061 kb on - strand at 335.063 kb on + strand at 335.064 kb on - strand at 335.098 kb on + strand at 335.098 kb on + strand at 335.098 kb on + strand at 335.105 kb on - strand at 335.109 kb on - strand at 335.162 kb on + strand at 335.163 kb on - strand at 335.164 kb on + strand at 335.193 kb on + strand at 335.193 kb on + strand at 335.194 kb on - strand at 335.244 kb on - strand at 335.279 kb on - strand at 335.288 kb on - strand at 335.293 kb on + strand at 335.294 kb on - strand at 335.294 kb on - strand at 335.298 kb on - strand at 335.300 kb on + strand at 335.310 kb on + strand at 335.314 kb on - strand at 335.314 kb on - strand at 335.314 kb on - strand at 335.320 kb on - strand at 335.321 kb on + strand at 335.321 kb on + strand at 335.326 kb on - strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.330 kb on + strand at 335.331 kb on - strand at 335.430 kb on + strand, within BACOVA_03243 at 335.431 kb on - strand, within BACOVA_03243 at 335.437 kb on + strand, within BACOVA_03243 at 335.440 kb on - strand, within BACOVA_03243 at 335.464 kb on - strand, within BACOVA_03243 at 335.480 kb on + strand, within BACOVA_03243 at 335.480 kb on + strand, within BACOVA_03243 at 335.480 kb on + strand, within BACOVA_03243 at 335.518 kb on + strand, within BACOVA_03243 at 335.518 kb on + strand, within BACOVA_03243 at 335.518 kb on + strand, within BACOVA_03243 at 335.530 kb on - strand, within BACOVA_03243 at 335.537 kb on + strand, within BACOVA_03243 at 335.538 kb on - strand, within BACOVA_03243 at 335.567 kb on - strand at 335.589 kb on - strand at 335.598 kb on + strand at 335.598 kb on + strand at 335.607 kb on - strand, within BACOVA_03244 at 335.607 kb on - strand, within BACOVA_03244 at 335.610 kb on - strand, within BACOVA_03244 at 335.620 kb on + strand, within BACOVA_03244 at 335.621 kb on - strand, within BACOVA_03244 at 335.717 kb on + strand at 335.718 kb on - strand at 335.721 kb on + strand at 335.722 kb on - strand at 335.722 kb on - strand at 335.722 kb on - strand at 335.744 kb on - strand at 335.748 kb on + strand at 335.749 kb on - strand at 335.754 kb on + strand at 335.755 kb on - strand at 335.755 kb on - strand at 335.755 kb on - strand at 335.755 kb on - strand at 335.758 kb on - strand at 335.758 kb on - strand at 335.760 kb on + strand at 335.771 kb on + strand, within BACOVA_03245 at 335.771 kb on + strand, within BACOVA_03245 at 335.810 kb on - strand, within BACOVA_03245 at 335.840 kb on + strand, within BACOVA_03245 at 335.840 kb on + strand, within BACOVA_03245 at 335.842 kb on + strand, within BACOVA_03245 at 335.843 kb on - strand, within BACOVA_03245 at 335.843 kb on - strand, within BACOVA_03245 at 335.845 kb on + strand, within BACOVA_03245 at 335.845 kb on + strand, within BACOVA_03245 at 335.845 kb on + strand, within BACOVA_03245 at 335.845 kb on + strand, within BACOVA_03245 at 335.846 kb on - strand, within BACOVA_03245 at 335.846 kb on - strand, within BACOVA_03245 at 335.848 kb on + strand, within BACOVA_03245 at 335.853 kb on + strand, within BACOVA_03245 at 335.853 kb on + strand, within BACOVA_03245 at 335.853 kb on + strand, within BACOVA_03245 at 335.854 kb on - strand, within BACOVA_03245 at 335.854 kb on - strand, within BACOVA_03245 at 335.855 kb on + strand, within BACOVA_03245 at 335.855 kb on + strand, within BACOVA_03245 at 335.856 kb on - strand, within BACOVA_03245 at 335.889 kb on + strand, within BACOVA_03245 at 335.906 kb on + strand, within BACOVA_03245 at 335.907 kb on - strand, within BACOVA_03245 at 335.945 kb on + strand at 335.946 kb on - strand at 335.963 kb on + strand at 335.964 kb on - strand at 335.985 kb on - strand at 335.986 kb on + strand at 335.987 kb on - strand at 335.987 kb on - strand at 335.992 kb on + strand at 335.992 kb on + strand at 335.994 kb on + strand at 335.994 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 333,554 + BACOVA_03240 0.60 -1.7 333,627 - BACOVA_03240 0.65 -0.1 333,634 + BACOVA_03240 0.66 +0.9 333,635 - BACOVA_03240 0.66 +2.0 333,659 + BACOVA_03240 0.68 +1.0 333,663 + BACOVA_03240 0.68 +0.7 333,664 - BACOVA_03240 0.68 -0.9 333,664 - BACOVA_03240 0.68 +0.5 333,664 - BACOVA_03240 0.68 +1.1 333,777 - BACOVA_03240 0.76 +2.0 333,781 + BACOVA_03240 0.76 +0.9 333,781 + BACOVA_03240 0.76 -0.9 333,873 - BACOVA_03240 0.83 +1.3 333,873 - BACOVA_03240 0.83 +0.2 333,990 + +1.4 333,991 - +0.9 334,023 + -2.9 334,056 + -0.5 334,056 + +1.7 334,057 - -0.1 334,065 + +0.3 334,066 - -0.6 334,066 - +1.9 334,074 + +0.1 334,075 - +1.8 334,105 - +0.9 334,160 + BACOVA_03241 0.13 +0.0 334,175 - BACOVA_03241 0.20 +0.7 334,187 - BACOVA_03241 0.24 -1.1 334,235 + BACOVA_03241 0.44 +2.0 334,257 - BACOVA_03241 0.53 -0.4 334,257 - BACOVA_03241 0.53 -0.6 334,279 + BACOVA_03241 0.62 +0.2 334,279 + BACOVA_03241 0.62 +1.3 334,279 + BACOVA_03241 0.62 -0.6 334,298 - BACOVA_03241 0.70 +2.6 334,379 - -0.9 334,384 - -0.7 334,401 + +0.2 334,402 - -0.1 334,408 - +0.2 334,439 - +0.7 334,497 - -0.4 334,516 + -0.7 334,517 - +0.5 334,637 + BACOVA_03242 0.25 +0.5 334,638 - BACOVA_03242 0.26 +0.2 334,641 + BACOVA_03242 0.26 +0.1 334,642 - BACOVA_03242 0.26 -1.7 334,703 + BACOVA_03242 0.39 -1.6 334,830 + BACOVA_03242 0.66 +1.2 334,869 - BACOVA_03242 0.74 +1.5 334,927 - BACOVA_03242 0.86 +0.7 334,931 - BACOVA_03242 0.87 +1.1 334,931 - BACOVA_03242 0.87 -0.7 334,982 - +2.0 334,985 + +0.1 334,986 - -0.6 335,028 + +0.5 335,061 - -1.5 335,063 + +1.0 335,064 - -0.9 335,098 + +0.4 335,098 + -0.9 335,098 + +0.0 335,105 - +1.2 335,109 - -3.3 335,162 + -0.5 335,163 - +1.3 335,164 + -0.0 335,193 + +1.1 335,193 + +2.4 335,194 - +0.4 335,244 - +0.7 335,279 - -1.2 335,288 - -0.1 335,293 + +0.2 335,294 - -1.0 335,294 - -1.5 335,298 - -0.7 335,300 + -2.5 335,310 + -0.6 335,314 - +0.4 335,314 - -1.5 335,314 - -0.5 335,320 - -1.6 335,321 + -0.1 335,321 + -0.8 335,326 - +1.1 335,330 + +0.6 335,330 + +0.5 335,330 + -1.3 335,330 + -0.5 335,330 + +0.4 335,330 + -1.2 335,331 - +0.3 335,430 + BACOVA_03243 0.39 +1.6 335,431 - BACOVA_03243 0.39 +1.7 335,437 + BACOVA_03243 0.42 +0.3 335,440 - BACOVA_03243 0.43 -0.4 335,464 - BACOVA_03243 0.52 -0.3 335,480 + BACOVA_03243 0.58 +0.2 335,480 + BACOVA_03243 0.58 -0.2 335,480 + BACOVA_03243 0.58 +0.3 335,518 + BACOVA_03243 0.72 +0.0 335,518 + BACOVA_03243 0.72 -0.3 335,518 + BACOVA_03243 0.72 -1.2 335,530 - BACOVA_03243 0.76 -1.2 335,537 + BACOVA_03243 0.79 -1.0 335,538 - BACOVA_03243 0.79 +0.2 335,567 - -0.6 335,589 - +0.7 335,598 + +0.0 335,598 + -2.4 335,607 - BACOVA_03244 0.13 -0.9 335,607 - BACOVA_03244 0.13 -3.0 335,610 - BACOVA_03244 0.16 -2.8 335,620 + BACOVA_03244 0.23 +0.9 335,621 - BACOVA_03244 0.24 +2.8 335,717 + -2.0 335,718 - +0.5 335,721 + -0.4 335,722 - -0.5 335,722 - +0.6 335,722 - -0.8 335,744 - +0.1 335,748 + -2.9 335,749 - +0.8 335,754 + -0.4 335,755 - -0.5 335,755 - -0.6 335,755 - -0.2 335,755 - -0.3 335,758 - +0.2 335,758 - -0.1 335,760 + +0.0 335,771 + BACOVA_03245 0.13 +0.6 335,771 + BACOVA_03245 0.13 -1.0 335,810 - BACOVA_03245 0.32 +1.1 335,840 + BACOVA_03245 0.47 -0.2 335,840 + BACOVA_03245 0.47 +1.0 335,842 + BACOVA_03245 0.48 +0.3 335,843 - BACOVA_03245 0.49 -2.3 335,843 - BACOVA_03245 0.49 -2.3 335,845 + BACOVA_03245 0.50 +0.3 335,845 + BACOVA_03245 0.50 +0.0 335,845 + BACOVA_03245 0.50 +0.7 335,845 + BACOVA_03245 0.50 +0.8 335,846 - BACOVA_03245 0.50 +1.5 335,846 - BACOVA_03245 0.50 -1.2 335,848 + BACOVA_03245 0.51 -1.0 335,853 + BACOVA_03245 0.53 +0.9 335,853 + BACOVA_03245 0.53 +0.2 335,853 + BACOVA_03245 0.53 +2.7 335,854 - BACOVA_03245 0.54 +1.0 335,854 - BACOVA_03245 0.54 +0.8 335,855 + BACOVA_03245 0.54 +0.1 335,855 + BACOVA_03245 0.54 +0.8 335,856 - BACOVA_03245 0.55 -0.0 335,889 + BACOVA_03245 0.71 +2.8 335,906 + BACOVA_03245 0.79 -0.9 335,907 - BACOVA_03245 0.80 -0.5 335,945 + -1.8 335,946 - -0.1 335,963 + +0.9 335,964 - +1.9 335,985 - -0.7 335,986 + -2.3 335,987 - +1.6 335,987 - +1.4 335,992 + -0.9 335,992 + -2.1 335,994 + -2.6 335,994 + +0.1
Or see this region's nucleotide sequence