Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03219 and BACOVA_03220 are separated by 42 nucleotides BACOVA_03220 and BACOVA_03222 are separated by 123 nucleotides
BACOVA_03219: BACOVA_03219 - VirE N-terminal domain protein, at 306,018 to 307,919
_03219
BACOVA_03220: BACOVA_03220 - hypothetical protein, at 307,962 to 308,825
_03220
BACOVA_03222: BACOVA_03222 - hypothetical protein, at 308,949 to 310,070
_03222
Position (kb) 307
308
309 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 306.973 kb on + strand, within BACOVA_03219 at 306.974 kb on - strand, within BACOVA_03219 at 307.032 kb on + strand, within BACOVA_03219 at 307.032 kb on + strand, within BACOVA_03219 at 307.097 kb on + strand, within BACOVA_03219 at 307.166 kb on + strand, within BACOVA_03219 at 307.166 kb on + strand, within BACOVA_03219 at 307.184 kb on + strand, within BACOVA_03219 at 307.185 kb on - strand, within BACOVA_03219 at 307.259 kb on - strand, within BACOVA_03219 at 307.266 kb on + strand, within BACOVA_03219 at 307.266 kb on + strand, within BACOVA_03219 at 307.267 kb on - strand, within BACOVA_03219 at 307.270 kb on - strand, within BACOVA_03219 at 307.270 kb on - strand, within BACOVA_03219 at 307.272 kb on - strand, within BACOVA_03219 at 307.315 kb on - strand, within BACOVA_03219 at 307.340 kb on + strand, within BACOVA_03219 at 307.341 kb on - strand, within BACOVA_03219 at 307.391 kb on + strand, within BACOVA_03219 at 307.392 kb on - strand, within BACOVA_03219 at 307.458 kb on + strand, within BACOVA_03219 at 307.533 kb on - strand, within BACOVA_03219 at 307.536 kb on + strand, within BACOVA_03219 at 307.537 kb on - strand, within BACOVA_03219 at 307.537 kb on - strand, within BACOVA_03219 at 307.551 kb on - strand, within BACOVA_03219 at 307.551 kb on - strand, within BACOVA_03219 at 307.552 kb on + strand, within BACOVA_03219 at 307.552 kb on + strand, within BACOVA_03219 at 307.553 kb on - strand, within BACOVA_03219 at 307.576 kb on - strand, within BACOVA_03219 at 307.709 kb on + strand, within BACOVA_03219 at 307.720 kb on - strand, within BACOVA_03219 at 307.720 kb on - strand, within BACOVA_03219 at 307.724 kb on + strand, within BACOVA_03219 at 307.770 kb on - strand at 307.883 kb on + strand at 307.884 kb on - strand at 307.884 kb on - strand at 307.888 kb on - strand at 307.888 kb on - strand at 307.891 kb on - strand at 307.901 kb on - strand at 307.913 kb on - strand at 307.950 kb on - strand at 307.952 kb on - strand at 307.953 kb on + strand at 307.955 kb on + strand at 307.956 kb on - strand at 307.956 kb on - strand at 307.962 kb on - strand at 307.962 kb on - strand at 307.982 kb on - strand at 308.069 kb on - strand, within BACOVA_03220 at 308.072 kb on - strand, within BACOVA_03220 at 308.194 kb on - strand, within BACOVA_03220 at 308.196 kb on - strand, within BACOVA_03220 at 308.196 kb on - strand, within BACOVA_03220 at 308.210 kb on + strand, within BACOVA_03220 at 308.234 kb on - strand, within BACOVA_03220 at 308.244 kb on - strand, within BACOVA_03220 at 308.244 kb on - strand, within BACOVA_03220 at 308.356 kb on - strand, within BACOVA_03220 at 308.388 kb on - strand, within BACOVA_03220 at 308.414 kb on - strand, within BACOVA_03220 at 308.414 kb on - strand, within BACOVA_03220 at 308.426 kb on - strand, within BACOVA_03220 at 308.488 kb on + strand, within BACOVA_03220 at 308.488 kb on + strand, within BACOVA_03220 at 308.489 kb on - strand, within BACOVA_03220 at 308.526 kb on + strand, within BACOVA_03220 at 308.527 kb on - strand, within BACOVA_03220 at 308.529 kb on - strand, within BACOVA_03220 at 308.570 kb on + strand, within BACOVA_03220 at 308.570 kb on + strand, within BACOVA_03220 at 308.597 kb on + strand, within BACOVA_03220 at 308.728 kb on + strand, within BACOVA_03220 at 308.729 kb on - strand, within BACOVA_03220 at 308.729 kb on - strand, within BACOVA_03220 at 308.741 kb on + strand at 308.741 kb on + strand at 308.741 kb on + strand at 308.742 kb on - strand at 308.742 kb on - strand at 308.743 kb on + strand at 308.753 kb on + strand at 308.832 kb on - strand at 308.832 kb on - strand at 308.836 kb on + strand at 308.837 kb on - strand at 308.837 kb on - strand at 308.837 kb on - strand at 308.837 kb on - strand at 308.840 kb on + strand at 308.840 kb on + strand at 308.841 kb on - strand at 308.859 kb on + strand at 308.859 kb on + strand at 308.860 kb on - strand at 308.868 kb on + strand at 308.868 kb on + strand at 308.884 kb on + strand at 308.914 kb on - strand at 308.943 kb on - strand at 308.947 kb on + strand at 308.948 kb on - strand at 308.948 kb on - strand at 308.966 kb on - strand at 308.996 kb on - strand at 309.003 kb on + strand at 309.066 kb on + strand, within BACOVA_03222 at 309.066 kb on + strand, within BACOVA_03222 at 309.158 kb on - strand, within BACOVA_03222 at 309.168 kb on - strand, within BACOVA_03222 at 309.178 kb on - strand, within BACOVA_03222 at 309.188 kb on + strand, within BACOVA_03222 at 309.209 kb on - strand, within BACOVA_03222 at 309.218 kb on + strand, within BACOVA_03222 at 309.294 kb on - strand, within BACOVA_03222 at 309.377 kb on - strand, within BACOVA_03222 at 309.377 kb on - strand, within BACOVA_03222 at 309.377 kb on - strand, within BACOVA_03222 at 309.434 kb on - strand, within BACOVA_03222 at 309.434 kb on - strand, within BACOVA_03222 at 309.545 kb on + strand, within BACOVA_03222 at 309.546 kb on - strand, within BACOVA_03222 at 309.571 kb on - strand, within BACOVA_03222 at 309.612 kb on - strand, within BACOVA_03222 at 309.645 kb on + strand, within BACOVA_03222 at 309.645 kb on + strand, within BACOVA_03222 at 309.646 kb on - strand, within BACOVA_03222 at 309.646 kb on - strand, within BACOVA_03222 at 309.646 kb on - strand, within BACOVA_03222 at 309.646 kb on - strand, within BACOVA_03222 at 309.648 kb on + strand, within BACOVA_03222 at 309.648 kb on + strand, within BACOVA_03222 at 309.648 kb on + strand, within BACOVA_03222 at 309.692 kb on - strand, within BACOVA_03222 at 309.694 kb on + strand, within BACOVA_03222 at 309.705 kb on + strand, within BACOVA_03222 at 309.705 kb on + strand, within BACOVA_03222 at 309.705 kb on + strand, within BACOVA_03222 at 309.705 kb on + strand, within BACOVA_03222 at 309.706 kb on - strand, within BACOVA_03222 at 309.706 kb on - strand, within BACOVA_03222 at 309.707 kb on + strand, within BACOVA_03222 at 309.707 kb on + strand, within BACOVA_03222 at 309.709 kb on + strand, within BACOVA_03222 at 309.709 kb on + strand, within BACOVA_03222 at 309.710 kb on - strand, within BACOVA_03222 at 309.713 kb on + strand, within BACOVA_03222 at 309.714 kb on - strand, within BACOVA_03222 at 309.747 kb on + strand, within BACOVA_03222 at 309.810 kb on + strand, within BACOVA_03222 at 309.811 kb on - strand, within BACOVA_03222 at 309.811 kb on - strand, within BACOVA_03222 at 309.815 kb on + strand, within BACOVA_03222
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 306,973 + BACOVA_03219 0.50 -0.5 306,974 - BACOVA_03219 0.50 +0.1 307,032 + BACOVA_03219 0.53 -0.2 307,032 + BACOVA_03219 0.53 -0.7 307,097 + BACOVA_03219 0.57 -0.2 307,166 + BACOVA_03219 0.60 +3.1 307,166 + BACOVA_03219 0.60 -1.3 307,184 + BACOVA_03219 0.61 -0.9 307,185 - BACOVA_03219 0.61 +0.4 307,259 - BACOVA_03219 0.65 +1.9 307,266 + BACOVA_03219 0.66 -1.1 307,266 + BACOVA_03219 0.66 -0.5 307,267 - BACOVA_03219 0.66 -0.1 307,270 - BACOVA_03219 0.66 -1.2 307,270 - BACOVA_03219 0.66 +0.9 307,272 - BACOVA_03219 0.66 +1.2 307,315 - BACOVA_03219 0.68 -2.6 307,340 + BACOVA_03219 0.70 +0.1 307,341 - BACOVA_03219 0.70 +0.3 307,391 + BACOVA_03219 0.72 +0.3 307,392 - BACOVA_03219 0.72 +2.4 307,458 + BACOVA_03219 0.76 -0.0 307,533 - BACOVA_03219 0.80 +1.5 307,536 + BACOVA_03219 0.80 +0.2 307,537 - BACOVA_03219 0.80 +0.4 307,537 - BACOVA_03219 0.80 -0.7 307,551 - BACOVA_03219 0.81 +0.6 307,551 - BACOVA_03219 0.81 -0.4 307,552 + BACOVA_03219 0.81 +1.5 307,552 + BACOVA_03219 0.81 -1.6 307,553 - BACOVA_03219 0.81 +0.1 307,576 - BACOVA_03219 0.82 +1.1 307,709 + BACOVA_03219 0.89 +0.4 307,720 - BACOVA_03219 0.89 +4.2 307,720 - BACOVA_03219 0.89 -2.9 307,724 + BACOVA_03219 0.90 +0.4 307,770 - -0.7 307,883 + +0.0 307,884 - -0.1 307,884 - +0.4 307,888 - -1.2 307,888 - +1.0 307,891 - -0.9 307,901 - +0.6 307,913 - -0.0 307,950 - +0.5 307,952 - -0.6 307,953 + +1.2 307,955 + +1.5 307,956 - -0.3 307,956 - -2.1 307,962 - +0.0 307,962 - -0.2 307,982 - -1.8 308,069 - BACOVA_03220 0.12 -0.3 308,072 - BACOVA_03220 0.13 -1.4 308,194 - BACOVA_03220 0.27 -1.3 308,196 - BACOVA_03220 0.27 -0.4 308,196 - BACOVA_03220 0.27 -0.3 308,210 + BACOVA_03220 0.29 -0.2 308,234 - BACOVA_03220 0.31 +1.3 308,244 - BACOVA_03220 0.33 -0.3 308,244 - BACOVA_03220 0.33 -0.5 308,356 - BACOVA_03220 0.46 +1.9 308,388 - BACOVA_03220 0.49 -1.1 308,414 - BACOVA_03220 0.52 -0.9 308,414 - BACOVA_03220 0.52 -0.2 308,426 - BACOVA_03220 0.54 +1.0 308,488 + BACOVA_03220 0.61 +0.1 308,488 + BACOVA_03220 0.61 -0.4 308,489 - BACOVA_03220 0.61 -0.6 308,526 + BACOVA_03220 0.65 +0.9 308,527 - BACOVA_03220 0.65 +0.6 308,529 - BACOVA_03220 0.66 +1.0 308,570 + BACOVA_03220 0.70 -0.4 308,570 + BACOVA_03220 0.70 -0.7 308,597 + BACOVA_03220 0.73 +2.0 308,728 + BACOVA_03220 0.89 +0.2 308,729 - BACOVA_03220 0.89 +0.4 308,729 - BACOVA_03220 0.89 -2.5 308,741 + +0.9 308,741 + -0.7 308,741 + -1.0 308,742 - -1.4 308,742 - -0.9 308,743 + -1.4 308,753 + +0.3 308,832 - +1.2 308,832 - -1.0 308,836 + -2.9 308,837 - +2.7 308,837 - -1.3 308,837 - -2.4 308,837 - +0.7 308,840 + -0.1 308,840 + +1.6 308,841 - +0.3 308,859 + -0.2 308,859 + +0.2 308,860 - -0.7 308,868 + -2.6 308,868 + -1.4 308,884 + -1.7 308,914 - +2.1 308,943 - -0.8 308,947 + +0.1 308,948 - -3.6 308,948 - -2.2 308,966 - +2.9 308,996 - +0.9 309,003 + -1.4 309,066 + BACOVA_03222 0.10 +0.1 309,066 + BACOVA_03222 0.10 -0.7 309,158 - BACOVA_03222 0.19 +0.0 309,168 - BACOVA_03222 0.20 +0.2 309,178 - BACOVA_03222 0.20 -1.1 309,188 + BACOVA_03222 0.21 -0.3 309,209 - BACOVA_03222 0.23 -0.2 309,218 + BACOVA_03222 0.24 -1.4 309,294 - BACOVA_03222 0.31 +1.0 309,377 - BACOVA_03222 0.38 +0.1 309,377 - BACOVA_03222 0.38 +1.1 309,377 - BACOVA_03222 0.38 -0.5 309,434 - BACOVA_03222 0.43 -0.9 309,434 - BACOVA_03222 0.43 +0.1 309,545 + BACOVA_03222 0.53 +0.5 309,546 - BACOVA_03222 0.53 +0.7 309,571 - BACOVA_03222 0.55 +0.3 309,612 - BACOVA_03222 0.59 -1.9 309,645 + BACOVA_03222 0.62 -2.3 309,645 + BACOVA_03222 0.62 -0.2 309,646 - BACOVA_03222 0.62 -0.4 309,646 - BACOVA_03222 0.62 -1.0 309,646 - BACOVA_03222 0.62 +0.4 309,646 - BACOVA_03222 0.62 -1.5 309,648 + BACOVA_03222 0.62 +3.1 309,648 + BACOVA_03222 0.62 +1.4 309,648 + BACOVA_03222 0.62 -0.2 309,692 - BACOVA_03222 0.66 -0.5 309,694 + BACOVA_03222 0.66 +0.5 309,705 + BACOVA_03222 0.67 +0.7 309,705 + BACOVA_03222 0.67 -0.5 309,705 + BACOVA_03222 0.67 -0.5 309,705 + BACOVA_03222 0.67 -0.9 309,706 - BACOVA_03222 0.67 -0.3 309,706 - BACOVA_03222 0.67 +0.7 309,707 + BACOVA_03222 0.68 -0.1 309,707 + BACOVA_03222 0.68 +0.8 309,709 + BACOVA_03222 0.68 -1.6 309,709 + BACOVA_03222 0.68 -1.0 309,710 - BACOVA_03222 0.68 -0.6 309,713 + BACOVA_03222 0.68 -2.1 309,714 - BACOVA_03222 0.68 -0.2 309,747 + BACOVA_03222 0.71 -0.8 309,810 + BACOVA_03222 0.77 +0.0 309,811 - BACOVA_03222 0.77 -0.1 309,811 - BACOVA_03222 0.77 -1.0 309,815 + BACOVA_03222 0.77 -1.5
Or see this region's nucleotide sequence