Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02748 and BACOVA_02749 are separated by 90 nucleotides BACOVA_02749 and BACOVA_02750 are separated by 12 nucleotides BACOVA_02750 and BACOVA_02751 are separated by 15 nucleotides
BACOVA_02748: BACOVA_02748 - hypothetical protein, at 188,931 to 190,328
_02748
BACOVA_02749: BACOVA_02749 - hypothetical protein, at 190,419 to 191,111
_02749
BACOVA_02750: BACOVA_02750 - hypothetical protein, at 191,124 to 192,314
_02750
BACOVA_02751: BACOVA_02751 - SusD family protein, at 192,330 to 194,267
_02751
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 190.132 kb on - strand, within BACOVA_02748 at 190.132 kb on - strand, within BACOVA_02748 at 190.142 kb on + strand, within BACOVA_02748 at 190.142 kb on + strand, within BACOVA_02748 at 190.144 kb on + strand, within BACOVA_02748 at 190.175 kb on + strand, within BACOVA_02748 at 190.212 kb on + strand at 190.233 kb on + strand at 190.238 kb on + strand at 190.239 kb on - strand at 190.250 kb on + strand at 190.250 kb on + strand at 190.250 kb on + strand at 190.254 kb on - strand at 190.290 kb on - strand at 190.290 kb on - strand at 190.311 kb on + strand at 190.315 kb on - strand at 190.330 kb on + strand at 190.404 kb on + strand at 190.404 kb on + strand at 190.405 kb on - strand at 190.405 kb on - strand at 190.420 kb on + strand at 190.421 kb on - strand at 190.423 kb on - strand at 190.423 kb on - strand at 190.458 kb on + strand at 190.459 kb on - strand at 190.459 kb on - strand at 190.481 kb on - strand at 190.488 kb on - strand at 190.488 kb on - strand at 190.492 kb on + strand, within BACOVA_02749 at 190.493 kb on - strand, within BACOVA_02749 at 190.493 kb on - strand, within BACOVA_02749 at 190.517 kb on + strand, within BACOVA_02749 at 190.518 kb on - strand, within BACOVA_02749 at 190.553 kb on + strand, within BACOVA_02749 at 190.560 kb on - strand, within BACOVA_02749 at 190.592 kb on + strand, within BACOVA_02749 at 190.625 kb on + strand, within BACOVA_02749 at 190.628 kb on + strand, within BACOVA_02749 at 190.629 kb on - strand, within BACOVA_02749 at 190.659 kb on - strand, within BACOVA_02749 at 190.659 kb on - strand, within BACOVA_02749 at 190.660 kb on - strand, within BACOVA_02749 at 190.670 kb on + strand, within BACOVA_02749 at 190.708 kb on + strand, within BACOVA_02749 at 190.708 kb on + strand, within BACOVA_02749 at 190.720 kb on + strand, within BACOVA_02749 at 190.742 kb on - strand, within BACOVA_02749 at 190.763 kb on + strand, within BACOVA_02749 at 190.784 kb on + strand, within BACOVA_02749 at 190.791 kb on - strand, within BACOVA_02749 at 190.791 kb on - strand, within BACOVA_02749 at 190.808 kb on + strand, within BACOVA_02749 at 190.833 kb on + strand, within BACOVA_02749 at 190.848 kb on + strand, within BACOVA_02749 at 190.869 kb on - strand, within BACOVA_02749 at 190.905 kb on + strand, within BACOVA_02749 at 190.983 kb on - strand, within BACOVA_02749 at 191.002 kb on + strand, within BACOVA_02749 at 191.028 kb on + strand, within BACOVA_02749 at 191.028 kb on + strand, within BACOVA_02749 at 191.029 kb on - strand, within BACOVA_02749 at 191.030 kb on + strand, within BACOVA_02749 at 191.030 kb on + strand, within BACOVA_02749 at 191.031 kb on - strand, within BACOVA_02749 at 191.031 kb on - strand, within BACOVA_02749 at 191.031 kb on - strand, within BACOVA_02749 at 191.038 kb on - strand, within BACOVA_02749 at 191.081 kb on + strand at 191.130 kb on - strand at 191.174 kb on + strand at 191.175 kb on - strand at 191.194 kb on - strand at 191.194 kb on - strand at 191.261 kb on + strand, within BACOVA_02750 at 191.261 kb on + strand, within BACOVA_02750 at 191.262 kb on - strand, within BACOVA_02750 at 191.262 kb on - strand, within BACOVA_02750 at 191.292 kb on + strand, within BACOVA_02750 at 191.299 kb on - strand, within BACOVA_02750 at 191.426 kb on + strand, within BACOVA_02750 at 191.426 kb on + strand, within BACOVA_02750 at 191.426 kb on + strand, within BACOVA_02750 at 191.429 kb on - strand, within BACOVA_02750 at 191.432 kb on + strand, within BACOVA_02750 at 191.433 kb on - strand, within BACOVA_02750 at 191.434 kb on + strand, within BACOVA_02750 at 191.434 kb on + strand, within BACOVA_02750 at 191.434 kb on + strand, within BACOVA_02750 at 191.435 kb on - strand, within BACOVA_02750 at 191.435 kb on - strand, within BACOVA_02750 at 191.435 kb on - strand, within BACOVA_02750 at 191.471 kb on + strand, within BACOVA_02750 at 191.471 kb on + strand, within BACOVA_02750 at 191.472 kb on - strand, within BACOVA_02750 at 191.500 kb on + strand, within BACOVA_02750 at 191.500 kb on + strand, within BACOVA_02750 at 191.501 kb on - strand, within BACOVA_02750 at 191.530 kb on + strand, within BACOVA_02750 at 191.530 kb on + strand, within BACOVA_02750 at 191.601 kb on - strand, within BACOVA_02750 at 191.696 kb on + strand, within BACOVA_02750 at 191.702 kb on + strand, within BACOVA_02750 at 191.702 kb on + strand, within BACOVA_02750 at 191.707 kb on + strand, within BACOVA_02750 at 191.707 kb on + strand, within BACOVA_02750 at 191.762 kb on + strand, within BACOVA_02750 at 191.768 kb on + strand, within BACOVA_02750 at 191.769 kb on - strand, within BACOVA_02750 at 191.791 kb on + strand, within BACOVA_02750 at 191.795 kb on + strand, within BACOVA_02750 at 191.961 kb on + strand, within BACOVA_02750 at 191.965 kb on - strand, within BACOVA_02750 at 191.986 kb on + strand, within BACOVA_02750 at 191.986 kb on + strand, within BACOVA_02750 at 191.986 kb on + strand, within BACOVA_02750 at 191.986 kb on + strand, within BACOVA_02750 at 191.993 kb on + strand, within BACOVA_02750 at 191.994 kb on - strand, within BACOVA_02750 at 192.045 kb on + strand, within BACOVA_02750 at 192.109 kb on + strand, within BACOVA_02750 at 192.120 kb on - strand, within BACOVA_02750 at 192.180 kb on + strand, within BACOVA_02750 at 192.244 kb on + strand at 192.244 kb on + strand at 192.244 kb on + strand at 192.245 kb on - strand at 192.245 kb on - strand at 192.254 kb on + strand at 192.255 kb on - strand at 192.255 kb on - strand at 192.255 kb on - strand at 192.299 kb on + strand at 192.300 kb on - strand at 192.300 kb on - strand at 192.315 kb on - strand at 192.331 kb on + strand at 192.401 kb on - strand at 192.420 kb on + strand at 192.445 kb on + strand at 192.446 kb on - strand at 192.446 kb on - strand at 192.472 kb on - strand at 192.497 kb on + strand at 192.499 kb on + strand at 192.506 kb on + strand at 192.506 kb on + strand at 192.507 kb on - strand at 192.507 kb on - strand at 192.528 kb on + strand, within BACOVA_02751 at 192.529 kb on - strand, within BACOVA_02751 at 192.529 kb on - strand, within BACOVA_02751 at 192.529 kb on - strand, within BACOVA_02751 at 192.563 kb on - strand, within BACOVA_02751 at 192.596 kb on + strand, within BACOVA_02751 at 192.596 kb on + strand, within BACOVA_02751 at 192.596 kb on + strand, within BACOVA_02751 at 192.597 kb on - strand, within BACOVA_02751 at 192.600 kb on + strand, within BACOVA_02751 at 192.600 kb on + strand, within BACOVA_02751 at 192.601 kb on - strand, within BACOVA_02751 at 192.635 kb on - strand, within BACOVA_02751 at 192.678 kb on - strand, within BACOVA_02751 at 192.694 kb on + strand, within BACOVA_02751 at 192.698 kb on - strand, within BACOVA_02751 at 192.698 kb on - strand, within BACOVA_02751 at 192.700 kb on + strand, within BACOVA_02751 at 192.700 kb on + strand, within BACOVA_02751 at 192.700 kb on + strand, within BACOVA_02751 at 192.702 kb on + strand, within BACOVA_02751 at 192.702 kb on + strand, within BACOVA_02751 at 192.757 kb on + strand, within BACOVA_02751 at 192.758 kb on - strand, within BACOVA_02751 at 192.788 kb on + strand, within BACOVA_02751 at 192.788 kb on + strand, within BACOVA_02751 at 192.789 kb on - strand, within BACOVA_02751 at 192.789 kb on - strand, within BACOVA_02751 at 192.789 kb on - strand, within BACOVA_02751 at 192.791 kb on + strand, within BACOVA_02751 at 192.799 kb on + strand, within BACOVA_02751 at 192.799 kb on + strand, within BACOVA_02751 at 192.800 kb on - strand, within BACOVA_02751 at 192.800 kb on - strand, within BACOVA_02751 at 192.804 kb on - strand, within BACOVA_02751 at 192.971 kb on + strand, within BACOVA_02751 at 192.971 kb on + strand, within BACOVA_02751 at 192.971 kb on + strand, within BACOVA_02751 at 193.046 kb on - strand, within BACOVA_02751 at 193.072 kb on + strand, within BACOVA_02751 at 193.072 kb on + strand, within BACOVA_02751 at 193.073 kb on - strand, within BACOVA_02751 at 193.075 kb on + strand, within BACOVA_02751 at 193.075 kb on + strand, within BACOVA_02751 at 193.101 kb on + strand, within BACOVA_02751 at 193.127 kb on - strand, within BACOVA_02751 at 193.145 kb on + strand, within BACOVA_02751 at 193.150 kb on - strand, within BACOVA_02751 at 193.195 kb on + strand, within BACOVA_02751 at 193.241 kb on + strand, within BACOVA_02751 at 193.255 kb on - strand, within BACOVA_02751
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 190,132 - BACOVA_02748 0.86 -1.4 190,132 - BACOVA_02748 0.86 -0.6 190,142 + BACOVA_02748 0.87 +0.4 190,142 + BACOVA_02748 0.87 -0.5 190,144 + BACOVA_02748 0.87 -0.1 190,175 + BACOVA_02748 0.89 +1.3 190,212 + -2.2 190,233 + -0.3 190,238 + +0.7 190,239 - +0.8 190,250 + -0.9 190,250 + +0.1 190,250 + -0.6 190,254 - +0.1 190,290 - -0.6 190,290 - -0.7 190,311 + +0.9 190,315 - +0.7 190,330 + -0.6 190,404 + +0.9 190,404 + +0.7 190,405 - +0.6 190,405 - -0.6 190,420 + -0.3 190,421 - -3.2 190,423 - -2.0 190,423 - +0.1 190,458 + -1.3 190,459 - +0.2 190,459 - -3.3 190,481 - -0.2 190,488 - -0.8 190,488 - -0.4 190,492 + BACOVA_02749 0.11 -0.4 190,493 - BACOVA_02749 0.11 -0.9 190,493 - BACOVA_02749 0.11 +0.2 190,517 + BACOVA_02749 0.14 -0.0 190,518 - BACOVA_02749 0.14 +1.1 190,553 + BACOVA_02749 0.19 +0.2 190,560 - BACOVA_02749 0.20 -0.9 190,592 + BACOVA_02749 0.25 -0.5 190,625 + BACOVA_02749 0.30 +0.9 190,628 + BACOVA_02749 0.30 -1.2 190,629 - BACOVA_02749 0.30 -2.4 190,659 - BACOVA_02749 0.35 -1.0 190,659 - BACOVA_02749 0.35 -0.1 190,660 - BACOVA_02749 0.35 -0.3 190,670 + BACOVA_02749 0.36 -2.2 190,708 + BACOVA_02749 0.42 -0.6 190,708 + BACOVA_02749 0.42 -0.3 190,720 + BACOVA_02749 0.43 -1.3 190,742 - BACOVA_02749 0.47 -1.3 190,763 + BACOVA_02749 0.50 -3.1 190,784 + BACOVA_02749 0.53 +0.1 190,791 - BACOVA_02749 0.54 -1.8 190,791 - BACOVA_02749 0.54 -1.7 190,808 + BACOVA_02749 0.56 +0.5 190,833 + BACOVA_02749 0.60 -0.6 190,848 + BACOVA_02749 0.62 -3.0 190,869 - BACOVA_02749 0.65 -1.7 190,905 + BACOVA_02749 0.70 +0.3 190,983 - BACOVA_02749 0.81 -0.3 191,002 + BACOVA_02749 0.84 +0.5 191,028 + BACOVA_02749 0.88 -0.5 191,028 + BACOVA_02749 0.88 +0.5 191,029 - BACOVA_02749 0.88 -0.2 191,030 + BACOVA_02749 0.88 -0.2 191,030 + BACOVA_02749 0.88 +0.3 191,031 - BACOVA_02749 0.88 -1.7 191,031 - BACOVA_02749 0.88 -1.5 191,031 - BACOVA_02749 0.88 +0.0 191,038 - BACOVA_02749 0.89 -0.6 191,081 + -0.5 191,130 - -0.7 191,174 + -0.2 191,175 - -0.9 191,194 - -0.5 191,194 - +0.2 191,261 + BACOVA_02750 0.12 +1.2 191,261 + BACOVA_02750 0.12 -1.6 191,262 - BACOVA_02750 0.12 -1.9 191,262 - BACOVA_02750 0.12 -2.3 191,292 + BACOVA_02750 0.14 -0.1 191,299 - BACOVA_02750 0.15 -0.8 191,426 + BACOVA_02750 0.25 +0.9 191,426 + BACOVA_02750 0.25 -1.2 191,426 + BACOVA_02750 0.25 -1.6 191,429 - BACOVA_02750 0.26 +0.1 191,432 + BACOVA_02750 0.26 +0.7 191,433 - BACOVA_02750 0.26 -0.8 191,434 + BACOVA_02750 0.26 -0.9 191,434 + BACOVA_02750 0.26 -1.4 191,434 + BACOVA_02750 0.26 +0.7 191,435 - BACOVA_02750 0.26 -1.0 191,435 - BACOVA_02750 0.26 -0.4 191,435 - BACOVA_02750 0.26 -0.6 191,471 + BACOVA_02750 0.29 +2.0 191,471 + BACOVA_02750 0.29 +0.0 191,472 - BACOVA_02750 0.29 -1.7 191,500 + BACOVA_02750 0.32 -0.2 191,500 + BACOVA_02750 0.32 +0.5 191,501 - BACOVA_02750 0.32 +3.3 191,530 + BACOVA_02750 0.34 -0.3 191,530 + BACOVA_02750 0.34 -1.1 191,601 - BACOVA_02750 0.40 -0.9 191,696 + BACOVA_02750 0.48 -0.2 191,702 + BACOVA_02750 0.49 -0.0 191,702 + BACOVA_02750 0.49 +0.8 191,707 + BACOVA_02750 0.49 -0.2 191,707 + BACOVA_02750 0.49 -0.3 191,762 + BACOVA_02750 0.54 +0.9 191,768 + BACOVA_02750 0.54 -1.1 191,769 - BACOVA_02750 0.54 -1.6 191,791 + BACOVA_02750 0.56 +0.0 191,795 + BACOVA_02750 0.56 +0.4 191,961 + BACOVA_02750 0.70 +0.4 191,965 - BACOVA_02750 0.71 -0.9 191,986 + BACOVA_02750 0.72 -0.4 191,986 + BACOVA_02750 0.72 +0.1 191,986 + BACOVA_02750 0.72 -1.8 191,986 + BACOVA_02750 0.72 +0.2 191,993 + BACOVA_02750 0.73 +0.9 191,994 - BACOVA_02750 0.73 -2.6 192,045 + BACOVA_02750 0.77 -0.1 192,109 + BACOVA_02750 0.83 -1.3 192,120 - BACOVA_02750 0.84 +0.3 192,180 + BACOVA_02750 0.89 +0.5 192,244 + +1.5 192,244 + +0.5 192,244 + +0.7 192,245 - +1.3 192,245 - -0.2 192,254 + -0.5 192,255 - -1.7 192,255 - -1.9 192,255 - -2.0 192,299 + -1.2 192,300 - -1.6 192,300 - +1.1 192,315 - -0.2 192,331 + +0.8 192,401 - -0.2 192,420 + -0.8 192,445 + -0.7 192,446 - -0.1 192,446 - -3.2 192,472 - -2.4 192,497 + -1.5 192,499 + -2.8 192,506 + -0.9 192,506 + -1.5 192,507 - +0.7 192,507 - -0.8 192,528 + BACOVA_02751 0.10 -0.4 192,529 - BACOVA_02751 0.10 -2.0 192,529 - BACOVA_02751 0.10 +0.5 192,529 - BACOVA_02751 0.10 -2.9 192,563 - BACOVA_02751 0.12 -0.2 192,596 + BACOVA_02751 0.14 +1.7 192,596 + BACOVA_02751 0.14 -0.5 192,596 + BACOVA_02751 0.14 -2.3 192,597 - BACOVA_02751 0.14 -1.1 192,600 + BACOVA_02751 0.14 -0.3 192,600 + BACOVA_02751 0.14 -0.4 192,601 - BACOVA_02751 0.14 +1.2 192,635 - BACOVA_02751 0.16 -0.9 192,678 - BACOVA_02751 0.18 +1.5 192,694 + BACOVA_02751 0.19 -0.2 192,698 - BACOVA_02751 0.19 -0.8 192,698 - BACOVA_02751 0.19 -1.3 192,700 + BACOVA_02751 0.19 +1.8 192,700 + BACOVA_02751 0.19 -1.2 192,700 + BACOVA_02751 0.19 +0.8 192,702 + BACOVA_02751 0.19 -0.2 192,702 + BACOVA_02751 0.19 -0.3 192,757 + BACOVA_02751 0.22 -0.1 192,758 - BACOVA_02751 0.22 -0.2 192,788 + BACOVA_02751 0.24 -0.7 192,788 + BACOVA_02751 0.24 +0.1 192,789 - BACOVA_02751 0.24 -1.4 192,789 - BACOVA_02751 0.24 -0.7 192,789 - BACOVA_02751 0.24 +1.8 192,791 + BACOVA_02751 0.24 +0.2 192,799 + BACOVA_02751 0.24 -1.9 192,799 + BACOVA_02751 0.24 +0.5 192,800 - BACOVA_02751 0.24 -1.1 192,800 - BACOVA_02751 0.24 -0.6 192,804 - BACOVA_02751 0.24 -1.3 192,971 + BACOVA_02751 0.33 -1.1 192,971 + BACOVA_02751 0.33 +0.4 192,971 + BACOVA_02751 0.33 +0.7 193,046 - BACOVA_02751 0.37 +0.4 193,072 + BACOVA_02751 0.38 -2.1 193,072 + BACOVA_02751 0.38 -0.7 193,073 - BACOVA_02751 0.38 -2.3 193,075 + BACOVA_02751 0.38 -0.9 193,075 + BACOVA_02751 0.38 -0.2 193,101 + BACOVA_02751 0.40 -0.1 193,127 - BACOVA_02751 0.41 -0.8 193,145 + BACOVA_02751 0.42 -1.6 193,150 - BACOVA_02751 0.42 -0.5 193,195 + BACOVA_02751 0.45 +0.0 193,241 + BACOVA_02751 0.47 -0.4 193,255 - BACOVA_02751 0.48 -1.3
Or see this region's nucleotide sequence