Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02724

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02723 and BACOVA_02724 are separated by 124 nucleotidesBACOVA_02724 and BACOVA_02725 are separated by 89 nucleotides BACOVA_02723: BACOVA_02723 - peptidase, U32 family, at 150,973 to 152,262 _02723 BACOVA_02724: BACOVA_02724 - TIM-barrel protein, nifR3 family, at 152,387 to 153,382 _02724 BACOVA_02725: BACOVA_02725 - PAP2 family protein, at 153,472 to 154,437 _02725 Position (kb) 152 153 154Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 151.424 kb on + strand, within BACOVA_02723at 151.445 kb on + strand, within BACOVA_02723at 151.445 kb on + strand, within BACOVA_02723at 151.461 kb on + strand, within BACOVA_02723at 151.461 kb on + strand, within BACOVA_02723at 151.462 kb on - strand, within BACOVA_02723at 151.466 kb on - strand, within BACOVA_02723at 151.466 kb on - strand, within BACOVA_02723at 151.466 kb on - strand, within BACOVA_02723at 151.466 kb on - strand, within BACOVA_02723at 151.469 kb on + strand, within BACOVA_02723at 151.470 kb on - strand, within BACOVA_02723at 151.470 kb on - strand, within BACOVA_02723at 151.504 kb on + strand, within BACOVA_02723at 151.510 kb on + strand, within BACOVA_02723at 151.573 kb on - strand, within BACOVA_02723at 151.626 kb on - strand, within BACOVA_02723at 151.640 kb on - strand, within BACOVA_02723at 151.640 kb on - strand, within BACOVA_02723at 151.647 kb on + strand, within BACOVA_02723at 151.647 kb on + strand, within BACOVA_02723at 151.648 kb on - strand, within BACOVA_02723at 151.716 kb on + strand, within BACOVA_02723at 151.776 kb on + strand, within BACOVA_02723at 151.776 kb on + strand, within BACOVA_02723at 151.776 kb on + strand, within BACOVA_02723at 151.777 kb on - strand, within BACOVA_02723at 151.843 kb on + strand, within BACOVA_02723at 151.844 kb on - strand, within BACOVA_02723at 151.941 kb on - strand, within BACOVA_02723at 152.007 kb on + strand, within BACOVA_02723at 152.008 kb on - strand, within BACOVA_02723at 152.008 kb on - strand, within BACOVA_02723at 152.008 kb on - strand, within BACOVA_02723at 152.010 kb on + strand, within BACOVA_02723at 152.010 kb on + strand, within BACOVA_02723at 152.040 kb on + strand, within BACOVA_02723at 152.088 kb on + strand, within BACOVA_02723at 152.124 kb on + strand, within BACOVA_02723at 152.124 kb on + strand, within BACOVA_02723at 152.146 kb on - strandat 152.146 kb on - strandat 152.169 kb on - strandat 152.173 kb on - strandat 152.263 kb on - strandat 152.263 kb on - strandat 152.267 kb on + strandat 152.268 kb on - strandat 152.268 kb on - strandat 152.270 kb on - strandat 152.271 kb on + strandat 152.272 kb on - strandat 152.275 kb on + strandat 152.288 kb on + strandat 152.313 kb on - strandat 152.352 kb on - strandat 152.362 kb on + strandat 152.370 kb on - strandat 152.384 kb on + strandat 152.384 kb on + strandat 152.384 kb on + strandat 152.385 kb on - strandat 152.394 kb on + strandat 152.394 kb on + strandat 152.409 kb on + strandat 152.410 kb on - strandat 152.417 kb on + strandat 152.418 kb on - strandat 152.418 kb on - strandat 152.428 kb on - strandat 152.449 kb on - strandat 152.500 kb on - strand, within BACOVA_02724at 152.500 kb on - strand, within BACOVA_02724at 152.501 kb on + strand, within BACOVA_02724at 152.502 kb on - strand, within BACOVA_02724at 152.502 kb on - strand, within BACOVA_02724at 152.502 kb on - strand, within BACOVA_02724at 152.502 kb on - strand, within BACOVA_02724at 152.532 kb on + strand, within BACOVA_02724at 152.533 kb on - strand, within BACOVA_02724at 152.533 kb on - strand, within BACOVA_02724at 152.562 kb on + strand, within BACOVA_02724at 152.563 kb on - strand, within BACOVA_02724at 152.563 kb on - strand, within BACOVA_02724at 152.602 kb on - strand, within BACOVA_02724at 152.646 kb on + strand, within BACOVA_02724at 152.647 kb on - strand, within BACOVA_02724at 152.703 kb on + strand, within BACOVA_02724at 152.729 kb on - strand, within BACOVA_02724at 152.733 kb on + strand, within BACOVA_02724at 152.733 kb on + strand, within BACOVA_02724at 152.775 kb on + strand, within BACOVA_02724at 152.775 kb on + strand, within BACOVA_02724at 152.775 kb on + strand, within BACOVA_02724at 152.776 kb on - strand, within BACOVA_02724at 152.776 kb on - strand, within BACOVA_02724at 152.833 kb on + strand, within BACOVA_02724at 152.838 kb on + strand, within BACOVA_02724at 152.839 kb on - strand, within BACOVA_02724at 152.839 kb on - strand, within BACOVA_02724at 152.877 kb on + strand, within BACOVA_02724at 152.892 kb on + strand, within BACOVA_02724at 152.893 kb on - strand, within BACOVA_02724at 152.918 kb on + strand, within BACOVA_02724at 152.919 kb on - strand, within BACOVA_02724at 152.919 kb on - strand, within BACOVA_02724at 152.947 kb on - strand, within BACOVA_02724at 152.947 kb on - strand, within BACOVA_02724at 152.978 kb on - strand, within BACOVA_02724at 152.978 kb on - strand, within BACOVA_02724at 153.022 kb on + strand, within BACOVA_02724at 153.113 kb on + strand, within BACOVA_02724at 153.114 kb on - strand, within BACOVA_02724at 153.117 kb on + strand, within BACOVA_02724at 153.118 kb on - strand, within BACOVA_02724at 153.145 kb on + strand, within BACOVA_02724at 153.161 kb on - strand, within BACOVA_02724at 153.161 kb on - strand, within BACOVA_02724at 153.161 kb on - strand, within BACOVA_02724at 153.168 kb on + strand, within BACOVA_02724at 153.169 kb on - strand, within BACOVA_02724at 153.169 kb on - strand, within BACOVA_02724at 153.169 kb on - strand, within BACOVA_02724at 153.232 kb on - strand, within BACOVA_02724at 153.232 kb on - strand, within BACOVA_02724at 153.232 kb on - strand, within BACOVA_02724at 153.274 kb on + strand, within BACOVA_02724at 153.292 kb on + strandat 153.292 kb on + strandat 153.293 kb on - strandat 153.392 kb on + strandat 153.393 kb on - strandat 153.395 kb on + strandat 153.396 kb on - strandat 153.397 kb on + strandat 153.397 kb on + strandat 153.398 kb on - strandat 153.398 kb on - strandat 153.398 kb on - strandat 153.402 kb on - strandat 153.418 kb on + strandat 153.445 kb on + strandat 153.445 kb on + strandat 153.457 kb on + strandat 153.474 kb on - strandat 153.474 kb on - strandat 153.527 kb on + strandat 153.532 kb on + strandat 153.572 kb on + strand, within BACOVA_02725at 153.572 kb on + strand, within BACOVA_02725at 153.585 kb on + strand, within BACOVA_02725at 153.585 kb on + strand, within BACOVA_02725at 153.587 kb on + strand, within BACOVA_02725at 153.588 kb on - strand, within BACOVA_02725at 153.589 kb on + strand, within BACOVA_02725at 153.589 kb on + strand, within BACOVA_02725at 153.590 kb on - strand, within BACOVA_02725at 153.590 kb on - strand, within BACOVA_02725at 153.590 kb on - strand, within BACOVA_02725at 153.591 kb on - strand, within BACOVA_02725at 153.613 kb on - strand, within BACOVA_02725at 153.613 kb on - strand, within BACOVA_02725at 153.613 kb on - strand, within BACOVA_02725at 153.613 kb on - strand, within BACOVA_02725at 153.613 kb on - strand, within BACOVA_02725at 153.615 kb on - strand, within BACOVA_02725at 153.622 kb on + strand, within BACOVA_02725at 153.624 kb on + strand, within BACOVA_02725at 153.664 kb on - strand, within BACOVA_02725at 153.678 kb on + strand, within BACOVA_02725at 153.688 kb on + strand, within BACOVA_02725at 153.688 kb on + strand, within BACOVA_02725at 153.757 kb on + strand, within BACOVA_02725at 153.802 kb on - strand, within BACOVA_02725at 153.840 kb on + strand, within BACOVA_02725at 153.840 kb on + strand, within BACOVA_02725at 153.840 kb on + strand, within BACOVA_02725at 153.845 kb on - strand, within BACOVA_02725at 153.845 kb on - strand, within BACOVA_02725at 153.849 kb on + strand, within BACOVA_02725at 153.904 kb on - strand, within BACOVA_02725at 153.905 kb on + strand, within BACOVA_02725at 154.021 kb on + strand, within BACOVA_02725at 154.068 kb on + strand, within BACOVA_02725at 154.068 kb on + strand, within BACOVA_02725at 154.105 kb on - strand, within BACOVA_02725at 154.126 kb on + strand, within BACOVA_02725at 154.126 kb on + strand, within BACOVA_02725at 154.182 kb on - strand, within BACOVA_02725at 154.254 kb on - strand, within BACOVA_02725at 154.254 kb on - strand, within BACOVA_02725at 154.255 kb on - strand, within BACOVA_02725at 154.258 kb on + strand, within BACOVA_02725at 154.284 kb on + strand, within BACOVA_02725at 154.284 kb on + strand, within BACOVA_02725at 154.363 kb on - strandat 154.365 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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151,424 + BACOVA_02723 0.35 -1.8
151,445 + BACOVA_02723 0.37 -0.2
151,445 + BACOVA_02723 0.37 -2.9
151,461 + BACOVA_02723 0.38 -2.6
151,461 + BACOVA_02723 0.38 -1.0
151,462 - BACOVA_02723 0.38 -1.0
151,466 - BACOVA_02723 0.38 +1.1
151,466 - BACOVA_02723 0.38 -1.3
151,466 - BACOVA_02723 0.38 -1.3
151,466 - BACOVA_02723 0.38 +0.8
151,469 + BACOVA_02723 0.38 -1.8
151,470 - BACOVA_02723 0.39 -0.2
151,470 - BACOVA_02723 0.39 +2.5
151,504 + BACOVA_02723 0.41 -0.4
151,510 + BACOVA_02723 0.42 +0.8
151,573 - BACOVA_02723 0.47 +0.1
151,626 - BACOVA_02723 0.51 -2.2
151,640 - BACOVA_02723 0.52 -1.0
151,640 - BACOVA_02723 0.52 -1.2
151,647 + BACOVA_02723 0.52 +0.9
151,647 + BACOVA_02723 0.52 +1.9
151,648 - BACOVA_02723 0.52 -0.7
151,716 + BACOVA_02723 0.58 -1.6
151,776 + BACOVA_02723 0.62 -1.2
151,776 + BACOVA_02723 0.62 -1.3
151,776 + BACOVA_02723 0.62 +1.1
151,777 - BACOVA_02723 0.62 -1.0
151,843 + BACOVA_02723 0.67 -2.7
151,844 - BACOVA_02723 0.68 -0.2
151,941 - BACOVA_02723 0.75 -0.1
152,007 + BACOVA_02723 0.80 +1.8
152,008 - BACOVA_02723 0.80 -1.8
152,008 - BACOVA_02723 0.80 -1.0
152,008 - BACOVA_02723 0.80 -2.1
152,010 + BACOVA_02723 0.80 +0.8
152,010 + BACOVA_02723 0.80 +2.6
152,040 + BACOVA_02723 0.83 -0.7
152,088 + BACOVA_02723 0.86 +1.5
152,124 + BACOVA_02723 0.89 -0.2
152,124 + BACOVA_02723 0.89 -2.6
152,146 - -1.0
152,146 - -0.0
152,169 - +0.7
152,173 - -3.7
152,263 - -0.3
152,263 - -1.5
152,267 + -0.2
152,268 - +0.2
152,268 - -0.5
152,270 - +0.9
152,271 + -1.2
152,272 - +0.8
152,275 + -0.5
152,288 + +0.4
152,313 - +0.1
152,352 - -1.3
152,362 + -0.5
152,370 - +0.1
152,384 + +1.4
152,384 + -0.3
152,384 + +0.1
152,385 - -0.2
152,394 + -1.2
152,394 + -0.3
152,409 + -0.5
152,410 - -0.5
152,417 + +1.5
152,418 - -0.5
152,418 - +1.5
152,428 - -2.8
152,449 - +0.3
152,500 - BACOVA_02724 0.11 -0.9
152,500 - BACOVA_02724 0.11 +0.3
152,501 + BACOVA_02724 0.11 -0.2
152,502 - BACOVA_02724 0.12 -1.7
152,502 - BACOVA_02724 0.12 -1.9
152,502 - BACOVA_02724 0.12 +2.7
152,502 - BACOVA_02724 0.12 -0.9
152,532 + BACOVA_02724 0.15 -1.5
152,533 - BACOVA_02724 0.15 -1.0
152,533 - BACOVA_02724 0.15 -1.2
152,562 + BACOVA_02724 0.18 -0.1
152,563 - BACOVA_02724 0.18 +0.3
152,563 - BACOVA_02724 0.18 -0.5
152,602 - BACOVA_02724 0.22 -0.9
152,646 + BACOVA_02724 0.26 -0.6
152,647 - BACOVA_02724 0.26 -0.4
152,703 + BACOVA_02724 0.32 +1.0
152,729 - BACOVA_02724 0.34 -0.7
152,733 + BACOVA_02724 0.35 +0.1
152,733 + BACOVA_02724 0.35 -1.2
152,775 + BACOVA_02724 0.39 +1.0
152,775 + BACOVA_02724 0.39 +0.1
152,775 + BACOVA_02724 0.39 -1.2
152,776 - BACOVA_02724 0.39 +0.1
152,776 - BACOVA_02724 0.39 -3.0
152,833 + BACOVA_02724 0.45 +1.0
152,838 + BACOVA_02724 0.45 -0.2
152,839 - BACOVA_02724 0.45 -1.2
152,839 - BACOVA_02724 0.45 +0.3
152,877 + BACOVA_02724 0.49 +0.0
152,892 + BACOVA_02724 0.51 -2.7
152,893 - BACOVA_02724 0.51 -0.5
152,918 + BACOVA_02724 0.53 +0.5
152,919 - BACOVA_02724 0.53 +0.8
152,919 - BACOVA_02724 0.53 -0.9
152,947 - BACOVA_02724 0.56 -1.5
152,947 - BACOVA_02724 0.56 +0.5
152,978 - BACOVA_02724 0.59 -0.8
152,978 - BACOVA_02724 0.59 +1.1
153,022 + BACOVA_02724 0.64 +0.5
153,113 + BACOVA_02724 0.73 -0.5
153,114 - BACOVA_02724 0.73 -1.8
153,117 + BACOVA_02724 0.73 +0.5
153,118 - BACOVA_02724 0.73 +0.3
153,145 + BACOVA_02724 0.76 -3.8
153,161 - BACOVA_02724 0.78 -0.7
153,161 - BACOVA_02724 0.78 -1.4
153,161 - BACOVA_02724 0.78 -1.2
153,168 + BACOVA_02724 0.78 +0.7
153,169 - BACOVA_02724 0.79 -1.0
153,169 - BACOVA_02724 0.79 +0.1
153,169 - BACOVA_02724 0.79 -0.2
153,232 - BACOVA_02724 0.85 +2.1
153,232 - BACOVA_02724 0.85 -1.4
153,232 - BACOVA_02724 0.85 +1.6
153,274 + BACOVA_02724 0.89 -0.2
153,292 + -0.6
153,292 + -1.2
153,293 - +0.5
153,392 + +1.6
153,393 - +0.4
153,395 + -0.6
153,396 - -0.1
153,397 + +0.5
153,397 + -0.1
153,398 - +0.1
153,398 - +0.4
153,398 - +0.3
153,402 - +0.8
153,418 + -0.5
153,445 + +1.6
153,445 + -4.4
153,457 + -0.6
153,474 - -0.1
153,474 - +0.8
153,527 + -3.2
153,532 + -1.5
153,572 + BACOVA_02725 0.10 -0.7
153,572 + BACOVA_02725 0.10 -2.0
153,585 + BACOVA_02725 0.12 -1.0
153,585 + BACOVA_02725 0.12 -0.3
153,587 + BACOVA_02725 0.12 -2.8
153,588 - BACOVA_02725 0.12 -1.0
153,589 + BACOVA_02725 0.12 -0.5
153,589 + BACOVA_02725 0.12 -0.9
153,590 - BACOVA_02725 0.12 -1.2
153,590 - BACOVA_02725 0.12 -0.7
153,590 - BACOVA_02725 0.12 -1.9
153,591 - BACOVA_02725 0.12 -2.0
153,613 - BACOVA_02725 0.15 -1.3
153,613 - BACOVA_02725 0.15 -1.0
153,613 - BACOVA_02725 0.15 -2.5
153,613 - BACOVA_02725 0.15 -0.9
153,613 - BACOVA_02725 0.15 -0.9
153,615 - BACOVA_02725 0.15 -3.6
153,622 + BACOVA_02725 0.16 +1.1
153,624 + BACOVA_02725 0.16 -0.7
153,664 - BACOVA_02725 0.20 -0.9
153,678 + BACOVA_02725 0.21 -0.9
153,688 + BACOVA_02725 0.22 -2.0
153,688 + BACOVA_02725 0.22 -0.5
153,757 + BACOVA_02725 0.30 -3.2
153,802 - BACOVA_02725 0.34 -2.5
153,840 + BACOVA_02725 0.38 +2.3
153,840 + BACOVA_02725 0.38 -1.8
153,840 + BACOVA_02725 0.38 -1.3
153,845 - BACOVA_02725 0.39 -2.9
153,845 - BACOVA_02725 0.39 -3.0
153,849 + BACOVA_02725 0.39 -2.2
153,904 - BACOVA_02725 0.45 -1.5
153,905 + BACOVA_02725 0.45 -2.3
154,021 + BACOVA_02725 0.57 -1.0
154,068 + BACOVA_02725 0.62 -1.1
154,068 + BACOVA_02725 0.62 -2.8
154,105 - BACOVA_02725 0.66 -3.2
154,126 + BACOVA_02725 0.68 -2.1
154,126 + BACOVA_02725 0.68 -0.2
154,182 - BACOVA_02725 0.73 -1.3
154,254 - BACOVA_02725 0.81 -1.9
154,254 - BACOVA_02725 0.81 -0.7
154,255 - BACOVA_02725 0.81 -1.9
154,258 + BACOVA_02725 0.81 -0.6
154,284 + BACOVA_02725 0.84 -1.0
154,284 + BACOVA_02725 0.84 -2.6
154,363 - -1.6
154,365 - -1.6

Or see this region's nucleotide sequence