Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02572 and BACOVA_02573 are separated by 282 nucleotides BACOVA_02573 and BACOVA_02574 are separated by 13 nucleotides BACOVA_02574 and BACOVA_02575 are separated by 226 nucleotides BACOVA_02575 and BACOVA_02576 are separated by 35 nucleotides BACOVA_02576 and BACOVA_02577 are separated by 143 nucleotides
BACOVA_02572: BACOVA_02572 - methyltransferase domain protein, at 340,989 to 341,699
_02572
BACOVA_02573: BACOVA_02573 - hypothetical protein, at 341,982 to 342,491
_02573
BACOVA_02574: BACOVA_02574 - hypothetical protein, at 342,505 to 342,801
_02574
BACOVA_02575: BACOVA_02575 - tRNA-Pro, at 343,028 to 343,102
_02575
BACOVA_02576: BACOVA_02576 - tRNA-Pro, at 343,138 to 343,212
_02576
BACOVA_02577: BACOVA_02577 - hypothetical protein, at 343,356 to 343,523
_02577
Position (kb)
341
342
343 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 340.985 kb on + strand at 341.021 kb on + strand at 341.185 kb on + strand, within BACOVA_02572 at 341.186 kb on - strand, within BACOVA_02572 at 341.197 kb on + strand, within BACOVA_02572 at 341.261 kb on - strand, within BACOVA_02572 at 341.283 kb on - strand, within BACOVA_02572 at 341.314 kb on + strand, within BACOVA_02572 at 341.315 kb on - strand, within BACOVA_02572 at 341.324 kb on + strand, within BACOVA_02572 at 341.335 kb on - strand, within BACOVA_02572 at 341.500 kb on + strand, within BACOVA_02572 at 341.507 kb on + strand, within BACOVA_02572 at 341.508 kb on - strand, within BACOVA_02572 at 341.510 kb on - strand, within BACOVA_02572 at 341.518 kb on + strand, within BACOVA_02572 at 341.542 kb on + strand, within BACOVA_02572 at 341.543 kb on - strand, within BACOVA_02572 at 341.615 kb on - strand, within BACOVA_02572 at 341.649 kb on + strand at 341.649 kb on + strand at 341.649 kb on + strand at 341.652 kb on - strand at 341.661 kb on + strand at 341.662 kb on - strand at 341.662 kb on - strand at 341.683 kb on - strand at 341.686 kb on - strand at 341.736 kb on - strand at 341.767 kb on - strand at 341.767 kb on - strand at 341.768 kb on + strand at 341.832 kb on - strand at 341.839 kb on - strand at 341.961 kb on + strand at 341.961 kb on + strand at 341.962 kb on - strand at 341.962 kb on - strand at 341.962 kb on - strand at 341.966 kb on - strand at 341.967 kb on + strand at 341.994 kb on + strand at 341.995 kb on - strand at 342.064 kb on + strand, within BACOVA_02573 at 342.068 kb on + strand, within BACOVA_02573 at 342.073 kb on - strand, within BACOVA_02573 at 342.084 kb on - strand, within BACOVA_02573 at 342.105 kb on + strand, within BACOVA_02573 at 342.117 kb on - strand, within BACOVA_02573 at 342.124 kb on + strand, within BACOVA_02573 at 342.126 kb on + strand, within BACOVA_02573 at 342.127 kb on - strand, within BACOVA_02573 at 342.132 kb on + strand, within BACOVA_02573 at 342.133 kb on - strand, within BACOVA_02573 at 342.143 kb on + strand, within BACOVA_02573 at 342.144 kb on - strand, within BACOVA_02573 at 342.145 kb on + strand, within BACOVA_02573 at 342.145 kb on + strand, within BACOVA_02573 at 342.145 kb on + strand, within BACOVA_02573 at 342.190 kb on - strand, within BACOVA_02573 at 342.191 kb on + strand, within BACOVA_02573 at 342.191 kb on + strand, within BACOVA_02573 at 342.230 kb on - strand, within BACOVA_02573 at 342.230 kb on - strand, within BACOVA_02573 at 342.230 kb on - strand, within BACOVA_02573 at 342.233 kb on + strand, within BACOVA_02573 at 342.234 kb on - strand, within BACOVA_02573 at 342.292 kb on + strand, within BACOVA_02573 at 342.293 kb on - strand, within BACOVA_02573 at 342.335 kb on + strand, within BACOVA_02573 at 342.336 kb on - strand, within BACOVA_02573 at 342.344 kb on - strand, within BACOVA_02573 at 342.355 kb on - strand, within BACOVA_02573 at 342.355 kb on - strand, within BACOVA_02573 at 342.367 kb on - strand, within BACOVA_02573 at 342.389 kb on + strand, within BACOVA_02573 at 342.390 kb on - strand, within BACOVA_02573 at 342.414 kb on + strand, within BACOVA_02573 at 342.417 kb on - strand, within BACOVA_02573 at 342.419 kb on - strand, within BACOVA_02573 at 342.419 kb on - strand, within BACOVA_02573 at 342.450 kb on + strand at 342.456 kb on + strand at 342.489 kb on - strand at 342.491 kb on + strand at 342.492 kb on - strand at 342.537 kb on - strand, within BACOVA_02574 at 342.539 kb on + strand, within BACOVA_02574 at 342.548 kb on - strand, within BACOVA_02574 at 342.572 kb on - strand, within BACOVA_02574 at 342.625 kb on - strand, within BACOVA_02574 at 342.678 kb on - strand, within BACOVA_02574 at 342.730 kb on - strand, within BACOVA_02574 at 342.730 kb on - strand, within BACOVA_02574 at 342.772 kb on + strand at 342.784 kb on - strand at 342.849 kb on + strand at 342.877 kb on + strand at 342.877 kb on + strand at 342.877 kb on + strand at 342.884 kb on - strand at 342.884 kb on - strand at 342.924 kb on - strand at 342.948 kb on - strand at 342.954 kb on - strand at 342.959 kb on - strand at 342.962 kb on + strand at 342.963 kb on - strand at 342.980 kb on - strand at 342.982 kb on + strand at 342.988 kb on + strand at 342.989 kb on - strand at 342.989 kb on - strand at 343.118 kb on - strand at 343.120 kb on + strand at 343.120 kb on + strand at 343.439 kb on + strand, within BACOVA_02577
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 340,985 + -0.0 341,021 + -1.0 341,185 + BACOVA_02572 0.28 -1.3 341,186 - BACOVA_02572 0.28 -0.7 341,197 + BACOVA_02572 0.29 +1.0 341,261 - BACOVA_02572 0.38 -0.8 341,283 - BACOVA_02572 0.41 +1.1 341,314 + BACOVA_02572 0.46 -0.8 341,315 - BACOVA_02572 0.46 -0.8 341,324 + BACOVA_02572 0.47 -1.2 341,335 - BACOVA_02572 0.49 -0.0 341,500 + BACOVA_02572 0.72 -0.4 341,507 + BACOVA_02572 0.73 -0.2 341,508 - BACOVA_02572 0.73 +0.9 341,510 - BACOVA_02572 0.73 +1.1 341,518 + BACOVA_02572 0.74 -1.4 341,542 + BACOVA_02572 0.78 +0.0 341,543 - BACOVA_02572 0.78 +0.3 341,615 - BACOVA_02572 0.88 +1.1 341,649 + -1.6 341,649 + -0.6 341,649 + -0.9 341,652 - +1.3 341,661 + +1.4 341,662 - +2.2 341,662 - +1.8 341,683 - +0.5 341,686 - -0.9 341,736 - +1.2 341,767 - -1.8 341,767 - -1.7 341,768 + -1.4 341,832 - +0.4 341,839 - +0.4 341,961 + +0.0 341,961 + -0.4 341,962 - +0.2 341,962 - -1.3 341,962 - +0.6 341,966 - -0.5 341,967 + -0.8 341,994 + -1.9 341,995 - +0.0 342,064 + BACOVA_02573 0.16 -1.7 342,068 + BACOVA_02573 0.17 -2.1 342,073 - BACOVA_02573 0.18 +0.1 342,084 - BACOVA_02573 0.20 +1.0 342,105 + BACOVA_02573 0.24 -1.2 342,117 - BACOVA_02573 0.26 +2.4 342,124 + BACOVA_02573 0.28 -1.7 342,126 + BACOVA_02573 0.28 +0.0 342,127 - BACOVA_02573 0.28 -0.3 342,132 + BACOVA_02573 0.29 -0.4 342,133 - BACOVA_02573 0.30 +1.3 342,143 + BACOVA_02573 0.32 -1.3 342,144 - BACOVA_02573 0.32 +0.0 342,145 + BACOVA_02573 0.32 +0.1 342,145 + BACOVA_02573 0.32 -1.0 342,145 + BACOVA_02573 0.32 -0.5 342,190 - BACOVA_02573 0.41 +1.0 342,191 + BACOVA_02573 0.41 -1.1 342,191 + BACOVA_02573 0.41 -0.2 342,230 - BACOVA_02573 0.49 -1.9 342,230 - BACOVA_02573 0.49 +1.8 342,230 - BACOVA_02573 0.49 +0.9 342,233 + BACOVA_02573 0.49 -0.4 342,234 - BACOVA_02573 0.49 +3.2 342,292 + BACOVA_02573 0.61 -1.6 342,293 - BACOVA_02573 0.61 -0.3 342,335 + BACOVA_02573 0.69 +0.4 342,336 - BACOVA_02573 0.69 +0.4 342,344 - BACOVA_02573 0.71 -1.9 342,355 - BACOVA_02573 0.73 +2.4 342,355 - BACOVA_02573 0.73 +1.6 342,367 - BACOVA_02573 0.75 +1.0 342,389 + BACOVA_02573 0.80 -0.9 342,390 - BACOVA_02573 0.80 +0.0 342,414 + BACOVA_02573 0.85 +1.6 342,417 - BACOVA_02573 0.85 +0.6 342,419 - BACOVA_02573 0.86 -2.1 342,419 - BACOVA_02573 0.86 +0.2 342,450 + +0.1 342,456 + -0.3 342,489 - -0.2 342,491 + -2.9 342,492 - +1.7 342,537 - BACOVA_02574 0.11 +3.0 342,539 + BACOVA_02574 0.11 -1.3 342,548 - BACOVA_02574 0.14 +0.1 342,572 - BACOVA_02574 0.23 +1.6 342,625 - BACOVA_02574 0.40 +3.2 342,678 - BACOVA_02574 0.58 -0.3 342,730 - BACOVA_02574 0.76 +0.2 342,730 - BACOVA_02574 0.76 -0.2 342,772 + +0.9 342,784 - +1.5 342,849 + -0.1 342,877 + +1.0 342,877 + -0.4 342,877 + +1.0 342,884 - -1.1 342,884 - +0.2 342,924 - -1.2 342,948 - -0.6 342,954 - -0.6 342,959 - +0.1 342,962 + +1.4 342,963 - -1.7 342,980 - -0.2 342,982 + +0.4 342,988 + -1.0 342,989 - +1.8 342,989 - -0.7 343,118 - -0.4 343,120 + -2.0 343,120 + -1.4 343,439 + BACOVA_02577 0.49 +0.0
Or see this region's nucleotide sequence