Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02529

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02527 and BACOVA_02528 overlap by 14 nucleotidesBACOVA_02528 and BACOVA_02529 are separated by 105 nucleotidesBACOVA_02529 and BACOVA_02530 are separated by 50 nucleotidesBACOVA_02530 and BACOVA_02531 are separated by 10 nucleotides BACOVA_02527: BACOVA_02527 - succinate-CoA ligase, beta subunit, at 295,082 to 296,212 _02527 BACOVA_02528: BACOVA_02528 - hypothetical protein, at 296,199 to 296,306 _02528 BACOVA_02529: BACOVA_02529 - [acyl-carrier-protein] S-malonyltransferase, at 296,412 to 297,299 _02529 BACOVA_02530: BACOVA_02530 - phosphomethylpyrimidine kinase, at 297,350 to 298,186 _02530 BACOVA_02531: BACOVA_02531 - hypothetical protein, at 298,197 to 298,328 _02531 Position (kb) 296 297 298Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 295.417 kb on + strand, within BACOVA_02527at 295.418 kb on - strand, within BACOVA_02527at 295.446 kb on - strand, within BACOVA_02527at 295.450 kb on + strand, within BACOVA_02527at 295.462 kb on + strand, within BACOVA_02527at 295.480 kb on - strand, within BACOVA_02527at 295.493 kb on - strand, within BACOVA_02527at 295.493 kb on - strand, within BACOVA_02527at 295.512 kb on - strand, within BACOVA_02527at 295.539 kb on - strand, within BACOVA_02527at 295.547 kb on + strand, within BACOVA_02527at 295.547 kb on + strand, within BACOVA_02527at 295.601 kb on - strand, within BACOVA_02527at 295.641 kb on - strand, within BACOVA_02527at 295.650 kb on - strand, within BACOVA_02527at 295.650 kb on - strand, within BACOVA_02527at 295.678 kb on + strand, within BACOVA_02527at 295.679 kb on - strand, within BACOVA_02527at 295.680 kb on + strand, within BACOVA_02527at 295.761 kb on + strand, within BACOVA_02527at 295.826 kb on + strand, within BACOVA_02527at 295.838 kb on - strand, within BACOVA_02527at 295.900 kb on - strand, within BACOVA_02527at 295.909 kb on - strand, within BACOVA_02527at 295.925 kb on - strand, within BACOVA_02527at 295.925 kb on - strand, within BACOVA_02527at 295.928 kb on + strand, within BACOVA_02527at 295.972 kb on + strand, within BACOVA_02527at 296.067 kb on - strand, within BACOVA_02527at 296.078 kb on + strand, within BACOVA_02527at 296.079 kb on - strand, within BACOVA_02527at 296.141 kb on + strandat 296.141 kb on + strandat 296.197 kb on - strandat 296.204 kb on + strandat 296.242 kb on + strand, within BACOVA_02528at 296.303 kb on - strandat 296.303 kb on - strandat 296.331 kb on - strandat 296.361 kb on - strandat 296.365 kb on - strandat 296.380 kb on - strandat 296.391 kb on + strandat 296.391 kb on + strandat 296.392 kb on - strandat 297.356 kb on + strandat 297.356 kb on + strandat 297.357 kb on - strandat 297.357 kb on - strandat 297.374 kb on - strandat 297.467 kb on - strand, within BACOVA_02530at 297.469 kb on - strand, within BACOVA_02530at 297.519 kb on + strand, within BACOVA_02530at 297.520 kb on - strand, within BACOVA_02530at 297.520 kb on - strand, within BACOVA_02530at 297.523 kb on + strand, within BACOVA_02530at 297.544 kb on + strand, within BACOVA_02530at 297.576 kb on - strand, within BACOVA_02530at 297.591 kb on + strand, within BACOVA_02530at 297.592 kb on - strand, within BACOVA_02530at 297.594 kb on - strand, within BACOVA_02530at 297.594 kb on - strand, within BACOVA_02530at 297.595 kb on + strand, within BACOVA_02530at 297.595 kb on + strand, within BACOVA_02530at 297.595 kb on + strand, within BACOVA_02530at 297.601 kb on - strand, within BACOVA_02530at 297.601 kb on - strand, within BACOVA_02530at 297.604 kb on + strand, within BACOVA_02530at 297.634 kb on + strand, within BACOVA_02530at 297.635 kb on - strand, within BACOVA_02530at 297.635 kb on - strand, within BACOVA_02530at 297.673 kb on + strand, within BACOVA_02530at 297.673 kb on + strand, within BACOVA_02530at 297.682 kb on - strand, within BACOVA_02530at 297.779 kb on + strand, within BACOVA_02530at 297.779 kb on + strand, within BACOVA_02530at 297.779 kb on + strand, within BACOVA_02530at 297.780 kb on - strand, within BACOVA_02530at 297.874 kb on - strand, within BACOVA_02530at 297.882 kb on + strand, within BACOVA_02530at 297.882 kb on + strand, within BACOVA_02530at 297.882 kb on + strand, within BACOVA_02530at 297.883 kb on - strand, within BACOVA_02530at 297.941 kb on + strand, within BACOVA_02530at 297.942 kb on - strand, within BACOVA_02530at 297.951 kb on - strand, within BACOVA_02530at 297.951 kb on - strand, within BACOVA_02530at 297.993 kb on - strand, within BACOVA_02530at 298.037 kb on + strand, within BACOVA_02530at 298.037 kb on + strand, within BACOVA_02530at 298.038 kb on - strand, within BACOVA_02530at 298.087 kb on - strand, within BACOVA_02530at 298.094 kb on + strand, within BACOVA_02530at 298.164 kb on - strandat 298.262 kb on + strand, within BACOVA_02531

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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295,417 + BACOVA_02527 0.30 -2.0
295,418 - BACOVA_02527 0.30 -1.1
295,446 - BACOVA_02527 0.32 +0.7
295,450 + BACOVA_02527 0.33 -1.4
295,462 + BACOVA_02527 0.34 -1.6
295,480 - BACOVA_02527 0.35 -0.6
295,493 - BACOVA_02527 0.36 -1.2
295,493 - BACOVA_02527 0.36 -0.7
295,512 - BACOVA_02527 0.38 -2.5
295,539 - BACOVA_02527 0.40 -1.2
295,547 + BACOVA_02527 0.41 -4.5
295,547 + BACOVA_02527 0.41 +0.2
295,601 - BACOVA_02527 0.46 +1.6
295,641 - BACOVA_02527 0.49 -2.8
295,650 - BACOVA_02527 0.50 -0.6
295,650 - BACOVA_02527 0.50 -0.3
295,678 + BACOVA_02527 0.53 -0.3
295,679 - BACOVA_02527 0.53 -1.5
295,680 + BACOVA_02527 0.53 -2.3
295,761 + BACOVA_02527 0.60 -0.8
295,826 + BACOVA_02527 0.66 -2.1
295,838 - BACOVA_02527 0.67 -2.2
295,900 - BACOVA_02527 0.72 -1.6
295,909 - BACOVA_02527 0.73 -0.1
295,925 - BACOVA_02527 0.75 +1.3
295,925 - BACOVA_02527 0.75 -2.2
295,928 + BACOVA_02527 0.75 -3.2
295,972 + BACOVA_02527 0.79 -1.5
296,067 - BACOVA_02527 0.87 -3.2
296,078 + BACOVA_02527 0.88 -1.2
296,079 - BACOVA_02527 0.88 -0.8
296,141 + -1.7
296,141 + -0.9
296,197 - -1.5
296,204 + -1.5
296,242 + BACOVA_02528 0.40 -3.4
296,303 - -2.8
296,303 - +0.0
296,331 - -1.9
296,361 - -2.6
296,365 - -0.5
296,380 - -1.2
296,391 + -1.3
296,391 + -0.8
296,392 - +0.1
297,356 + +1.4
297,356 + +1.0
297,357 - -0.8
297,357 - -1.3
297,374 - -2.6
297,467 - BACOVA_02530 0.14 -2.7
297,469 - BACOVA_02530 0.14 -1.3
297,519 + BACOVA_02530 0.20 +1.1
297,520 - BACOVA_02530 0.20 +0.3
297,520 - BACOVA_02530 0.20 -0.3
297,523 + BACOVA_02530 0.21 +0.9
297,544 + BACOVA_02530 0.23 -0.3
297,576 - BACOVA_02530 0.27 +0.3
297,591 + BACOVA_02530 0.29 -0.3
297,592 - BACOVA_02530 0.29 -0.3
297,594 - BACOVA_02530 0.29 -0.0
297,594 - BACOVA_02530 0.29 +1.1
297,595 + BACOVA_02530 0.29 +0.7
297,595 + BACOVA_02530 0.29 -1.1
297,595 + BACOVA_02530 0.29 -0.5
297,601 - BACOVA_02530 0.30 +0.3
297,601 - BACOVA_02530 0.30 -0.4
297,604 + BACOVA_02530 0.30 +2.0
297,634 + BACOVA_02530 0.34 -1.4
297,635 - BACOVA_02530 0.34 +1.4
297,635 - BACOVA_02530 0.34 -0.0
297,673 + BACOVA_02530 0.39 -0.3
297,673 + BACOVA_02530 0.39 -0.9
297,682 - BACOVA_02530 0.40 +0.2
297,779 + BACOVA_02530 0.51 -0.7
297,779 + BACOVA_02530 0.51 -0.2
297,779 + BACOVA_02530 0.51 -0.6
297,780 - BACOVA_02530 0.51 +0.1
297,874 - BACOVA_02530 0.63 +0.7
297,882 + BACOVA_02530 0.64 -1.0
297,882 + BACOVA_02530 0.64 +0.8
297,882 + BACOVA_02530 0.64 +0.2
297,883 - BACOVA_02530 0.64 -0.7
297,941 + BACOVA_02530 0.71 -0.7
297,942 - BACOVA_02530 0.71 +0.2
297,951 - BACOVA_02530 0.72 -0.0
297,951 - BACOVA_02530 0.72 +0.7
297,993 - BACOVA_02530 0.77 +0.9
298,037 + BACOVA_02530 0.82 +0.4
298,037 + BACOVA_02530 0.82 +0.7
298,038 - BACOVA_02530 0.82 +0.5
298,087 - BACOVA_02530 0.88 -1.6
298,094 + BACOVA_02530 0.89 +0.3
298,164 - +2.0
298,262 + BACOVA_02531 0.49 -0.0

Or see this region's nucleotide sequence