Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02279 and BACOVA_02280 are separated by 8 nucleotides BACOVA_02280 and BACOVA_02282 are separated by 13 nucleotides BACOVA_02282 and BACOVA_02281 overlap by 47 nucleotides BACOVA_02281 and BACOVA_02283 are separated by 17 nucleotides BACOVA_02283 and BACOVA_02284 are separated by 11 nucleotides
BACOVA_02279: BACOVA_02279 - hypothetical protein, at 53,538 to 54,134
_02279
BACOVA_02280: BACOVA_02280 - hypothetical protein, at 54,143 to 54,571
_02280
BACOVA_02282: BACOVA_02282 - hypothetical protein, at 54,585 to 54,701
_02282
BACOVA_02281: BACOVA_02281 - hypothetical protein, at 54,655 to 55,011
_02281
BACOVA_02283: BACOVA_02283 - hypothetical protein, at 55,029 to 55,319
_02283
BACOVA_02284: BACOVA_02284 - hypothetical protein, at 55,331 to 56,683
_02284
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 53.723 kb on + strand, within BACOVA_02279 at 53.779 kb on + strand, within BACOVA_02279 at 53.779 kb on + strand, within BACOVA_02279 at 53.779 kb on + strand, within BACOVA_02279 at 53.816 kb on - strand, within BACOVA_02279 at 53.844 kb on + strand, within BACOVA_02279 at 53.956 kb on + strand, within BACOVA_02279 at 53.991 kb on - strand, within BACOVA_02279 at 53.995 kb on + strand, within BACOVA_02279 at 54.009 kb on - strand, within BACOVA_02279 at 54.018 kb on + strand, within BACOVA_02279 at 54.019 kb on - strand, within BACOVA_02279 at 54.024 kb on - strand, within BACOVA_02279 at 54.115 kb on + strand at 54.127 kb on + strand at 54.163 kb on - strand at 54.191 kb on + strand, within BACOVA_02280 at 54.192 kb on - strand, within BACOVA_02280 at 54.195 kb on - strand, within BACOVA_02280 at 54.219 kb on + strand, within BACOVA_02280 at 54.220 kb on - strand, within BACOVA_02280 at 54.276 kb on + strand, within BACOVA_02280 at 54.282 kb on + strand, within BACOVA_02280 at 54.569 kb on + strand at 54.569 kb on + strand at 54.569 kb on + strand at 54.569 kb on + strand at 54.570 kb on - strand at 54.570 kb on - strand at 54.572 kb on + strand at 54.573 kb on - strand at 54.573 kb on - strand at 54.576 kb on + strand at 54.576 kb on + strand at 54.576 kb on + strand at 54.577 kb on - strand at 54.577 kb on - strand at 54.577 kb on - strand at 54.577 kb on - strand at 54.579 kb on - strand at 54.587 kb on - strand at 54.665 kb on + strand at 54.799 kb on - strand, within BACOVA_02281 at 54.964 kb on - strand, within BACOVA_02281 at 55.009 kb on + strand at 55.216 kb on + strand, within BACOVA_02283 at 55.216 kb on + strand, within BACOVA_02283 at 55.236 kb on + strand, within BACOVA_02283 at 55.237 kb on - strand, within BACOVA_02283 at 55.285 kb on + strand, within BACOVA_02283 at 55.293 kb on + strand at 55.311 kb on - strand at 55.435 kb on - strand at 55.659 kb on + strand, within BACOVA_02284 at 55.659 kb on + strand, within BACOVA_02284 at 55.660 kb on - strand, within BACOVA_02284 at 55.712 kb on + strand, within BACOVA_02284 at 55.785 kb on + strand, within BACOVA_02284 at 55.786 kb on - strand, within BACOVA_02284 at 55.786 kb on - strand, within BACOVA_02284 at 55.899 kb on - strand, within BACOVA_02284 at 55.947 kb on + strand, within BACOVA_02284 at 55.957 kb on + strand, within BACOVA_02284 at 55.982 kb on + strand, within BACOVA_02284
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 53,723 + BACOVA_02279 0.31 +1.1 53,779 + BACOVA_02279 0.40 +0.4 53,779 + BACOVA_02279 0.40 -0.2 53,779 + BACOVA_02279 0.40 +0.4 53,816 - BACOVA_02279 0.47 +1.1 53,844 + BACOVA_02279 0.51 -2.3 53,956 + BACOVA_02279 0.70 -1.7 53,991 - BACOVA_02279 0.76 +1.5 53,995 + BACOVA_02279 0.77 -0.6 54,009 - BACOVA_02279 0.79 -1.0 54,018 + BACOVA_02279 0.80 -0.0 54,019 - BACOVA_02279 0.81 -0.3 54,024 - BACOVA_02279 0.81 +0.1 54,115 + -0.1 54,127 + -0.0 54,163 - -1.9 54,191 + BACOVA_02280 0.11 -1.7 54,192 - BACOVA_02280 0.11 -1.3 54,195 - BACOVA_02280 0.12 -0.8 54,219 + BACOVA_02280 0.18 +0.4 54,220 - BACOVA_02280 0.18 -2.0 54,276 + BACOVA_02280 0.31 -0.0 54,282 + BACOVA_02280 0.32 -1.4 54,569 + -1.1 54,569 + -0.2 54,569 + +0.1 54,569 + -1.3 54,570 - -2.6 54,570 - +1.0 54,572 + -1.9 54,573 - +0.8 54,573 - -0.6 54,576 + -0.4 54,576 + -1.0 54,576 + +1.3 54,577 - -0.5 54,577 - -1.2 54,577 - +1.9 54,577 - +0.6 54,579 - -1.1 54,587 - +0.0 54,665 + +0.1 54,799 - BACOVA_02281 0.40 +0.3 54,964 - BACOVA_02281 0.87 -1.1 55,009 + -0.6 55,216 + BACOVA_02283 0.64 -1.0 55,216 + BACOVA_02283 0.64 -2.0 55,236 + BACOVA_02283 0.71 -1.0 55,237 - BACOVA_02283 0.71 -1.4 55,285 + BACOVA_02283 0.88 -1.3 55,293 + -2.4 55,311 - +0.5 55,435 - -0.2 55,659 + BACOVA_02284 0.24 +0.1 55,659 + BACOVA_02284 0.24 +1.3 55,660 - BACOVA_02284 0.24 +2.4 55,712 + BACOVA_02284 0.28 -0.3 55,785 + BACOVA_02284 0.34 +0.2 55,786 - BACOVA_02284 0.34 -2.1 55,786 - BACOVA_02284 0.34 +1.0 55,899 - BACOVA_02284 0.42 +0.9 55,947 + BACOVA_02284 0.46 +0.1 55,957 + BACOVA_02284 0.46 -1.5 55,982 + BACOVA_02284 0.48 -0.3
Or see this region's nucleotide sequence