Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02065 and BACOVA_02066 are separated by 187 nucleotides BACOVA_02066 and BACOVA_02067 are separated by 250 nucleotides
BACOVA_02065: BACOVA_02065 - response regulator receiver domain protein, at 381,936 to 385,883
_02065
BACOVA_02066: BACOVA_02066 - hypothetical protein, at 386,071 to 386,778
_02066
BACOVA_02067: BACOVA_02067 - alkyl hydroperoxide reductase, F subunit, at 387,029 to 388,579
_02067
Position (kb) 386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 385.097 kb on - strand, within BACOVA_02065 at 385.121 kb on - strand, within BACOVA_02065 at 385.121 kb on - strand, within BACOVA_02065 at 385.163 kb on + strand, within BACOVA_02065 at 385.185 kb on + strand, within BACOVA_02065 at 385.186 kb on - strand, within BACOVA_02065 at 385.186 kb on - strand, within BACOVA_02065 at 385.208 kb on - strand, within BACOVA_02065 at 385.220 kb on + strand, within BACOVA_02065 at 385.223 kb on + strand, within BACOVA_02065 at 385.244 kb on + strand, within BACOVA_02065 at 385.246 kb on + strand, within BACOVA_02065 at 385.250 kb on - strand, within BACOVA_02065 at 385.250 kb on - strand, within BACOVA_02065 at 385.259 kb on - strand, within BACOVA_02065 at 385.282 kb on - strand, within BACOVA_02065 at 385.288 kb on + strand, within BACOVA_02065 at 385.316 kb on + strand, within BACOVA_02065 at 385.325 kb on + strand, within BACOVA_02065 at 385.375 kb on + strand, within BACOVA_02065 at 385.376 kb on - strand, within BACOVA_02065 at 385.376 kb on - strand, within BACOVA_02065 at 385.402 kb on - strand, within BACOVA_02065 at 385.471 kb on - strand, within BACOVA_02065 at 385.551 kb on - strand at 385.620 kb on - strand at 385.648 kb on + strand at 385.648 kb on + strand at 385.648 kb on + strand at 385.649 kb on - strand at 385.649 kb on - strand at 385.649 kb on - strand at 385.649 kb on - strand at 385.650 kb on + strand at 385.650 kb on + strand at 385.651 kb on - strand at 385.652 kb on + strand at 385.653 kb on - strand at 385.656 kb on - strand at 385.656 kb on - strand at 385.693 kb on - strand at 385.695 kb on - strand at 385.733 kb on - strand at 385.785 kb on + strand at 385.785 kb on + strand at 385.807 kb on + strand at 385.812 kb on - strand at 385.895 kb on + strand at 385.895 kb on + strand at 385.907 kb on + strand at 385.909 kb on + strand at 385.912 kb on - strand at 385.919 kb on - strand at 386.000 kb on + strand at 386.001 kb on - strand at 386.058 kb on - strand at 386.067 kb on + strand at 386.067 kb on + strand at 386.080 kb on + strand at 386.087 kb on + strand at 386.087 kb on + strand at 386.087 kb on + strand at 386.096 kb on + strand at 386.099 kb on + strand at 386.099 kb on + strand at 386.099 kb on + strand at 386.244 kb on - strand, within BACOVA_02066 at 386.246 kb on + strand, within BACOVA_02066 at 386.246 kb on + strand, within BACOVA_02066 at 386.257 kb on + strand, within BACOVA_02066 at 386.312 kb on + strand, within BACOVA_02066 at 386.313 kb on - strand, within BACOVA_02066 at 386.325 kb on + strand, within BACOVA_02066 at 386.326 kb on - strand, within BACOVA_02066 at 386.338 kb on + strand, within BACOVA_02066 at 386.339 kb on - strand, within BACOVA_02066 at 386.339 kb on - strand, within BACOVA_02066 at 386.339 kb on - strand, within BACOVA_02066 at 386.339 kb on - strand, within BACOVA_02066 at 386.340 kb on + strand, within BACOVA_02066 at 386.385 kb on + strand, within BACOVA_02066 at 386.405 kb on - strand, within BACOVA_02066 at 386.448 kb on + strand, within BACOVA_02066 at 386.501 kb on - strand, within BACOVA_02066 at 386.501 kb on - strand, within BACOVA_02066 at 386.501 kb on - strand, within BACOVA_02066 at 386.503 kb on - strand, within BACOVA_02066 at 386.518 kb on + strand, within BACOVA_02066 at 386.518 kb on + strand, within BACOVA_02066 at 386.586 kb on - strand, within BACOVA_02066 at 386.600 kb on + strand, within BACOVA_02066 at 386.600 kb on - strand, within BACOVA_02066 at 386.603 kb on - strand, within BACOVA_02066 at 386.603 kb on - strand, within BACOVA_02066 at 386.618 kb on + strand, within BACOVA_02066 at 386.619 kb on - strand, within BACOVA_02066 at 386.691 kb on - strand, within BACOVA_02066 at 386.762 kb on - strand at 386.762 kb on - strand at 386.763 kb on + strand at 386.763 kb on + strand at 386.763 kb on + strand at 386.763 kb on + strand at 386.763 kb on + strand at 386.764 kb on - strand at 386.767 kb on + strand at 386.767 kb on + strand at 386.767 kb on + strand at 386.768 kb on - strand at 386.768 kb on - strand at 386.768 kb on - strand at 386.780 kb on + strand at 386.804 kb on + strand at 386.805 kb on - strand at 386.821 kb on - strand at 386.821 kb on - strand at 386.917 kb on + strand at 386.921 kb on + strand at 386.929 kb on - strand at 386.949 kb on - strand at 386.957 kb on + strand at 386.974 kb on - strand at 386.974 kb on - strand at 386.974 kb on - strand at 386.988 kb on + strand at 387.000 kb on + strand at 387.001 kb on - strand at 387.014 kb on - strand at 387.021 kb on + strand at 387.035 kb on - strand at 387.092 kb on - strand at 387.097 kb on + strand at 387.097 kb on + strand at 387.109 kb on + strand at 387.110 kb on - strand at 387.111 kb on + strand at 387.111 kb on + strand at 387.111 kb on + strand at 387.112 kb on - strand at 387.112 kb on - strand at 387.112 kb on - strand at 387.112 kb on - strand at 387.121 kb on + strand at 387.141 kb on + strand at 387.141 kb on + strand at 387.141 kb on + strand at 387.146 kb on - strand at 387.221 kb on + strand, within BACOVA_02067 at 387.229 kb on + strand, within BACOVA_02067 at 387.257 kb on + strand, within BACOVA_02067 at 387.257 kb on + strand, within BACOVA_02067 at 387.258 kb on - strand, within BACOVA_02067 at 387.258 kb on - strand, within BACOVA_02067 at 387.326 kb on - strand, within BACOVA_02067 at 387.326 kb on - strand, within BACOVA_02067 at 387.338 kb on + strand, within BACOVA_02067 at 387.338 kb on + strand, within BACOVA_02067 at 387.463 kb on + strand, within BACOVA_02067 at 387.509 kb on + strand, within BACOVA_02067 at 387.510 kb on - strand, within BACOVA_02067 at 387.510 kb on - strand, within BACOVA_02067 at 387.518 kb on + strand, within BACOVA_02067 at 387.519 kb on - strand, within BACOVA_02067 at 387.519 kb on - strand, within BACOVA_02067 at 387.581 kb on - strand, within BACOVA_02067 at 387.605 kb on - strand, within BACOVA_02067 at 387.674 kb on - strand, within BACOVA_02067 at 387.674 kb on - strand, within BACOVA_02067 at 387.714 kb on - strand, within BACOVA_02067 at 387.718 kb on + strand, within BACOVA_02067 at 387.719 kb on - strand, within BACOVA_02067
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 385,097 - BACOVA_02065 0.80 +0.5 385,121 - BACOVA_02065 0.81 -0.5 385,121 - BACOVA_02065 0.81 +0.6 385,163 + BACOVA_02065 0.82 +0.8 385,185 + BACOVA_02065 0.82 -1.7 385,186 - BACOVA_02065 0.82 -0.1 385,186 - BACOVA_02065 0.82 -0.2 385,208 - BACOVA_02065 0.83 +1.1 385,220 + BACOVA_02065 0.83 -0.6 385,223 + BACOVA_02065 0.83 +0.4 385,244 + BACOVA_02065 0.84 -1.9 385,246 + BACOVA_02065 0.84 +1.3 385,250 - BACOVA_02065 0.84 -0.5 385,250 - BACOVA_02065 0.84 +0.1 385,259 - BACOVA_02065 0.84 -0.4 385,282 - BACOVA_02065 0.85 -0.4 385,288 + BACOVA_02065 0.85 +0.4 385,316 + BACOVA_02065 0.86 -0.2 385,325 + BACOVA_02065 0.86 +1.0 385,375 + BACOVA_02065 0.87 +0.9 385,376 - BACOVA_02065 0.87 +0.1 385,376 - BACOVA_02065 0.87 -0.6 385,402 - BACOVA_02065 0.88 +0.5 385,471 - BACOVA_02065 0.90 +1.6 385,551 - -0.2 385,620 - -0.4 385,648 + -1.0 385,648 + +0.2 385,648 + +0.5 385,649 - +1.3 385,649 - -1.6 385,649 - +0.4 385,649 - -0.5 385,650 + +1.0 385,650 + -1.6 385,651 - -1.2 385,652 + -1.1 385,653 - -0.3 385,656 - -0.3 385,656 - +1.6 385,693 - -0.2 385,695 - -0.9 385,733 - -0.0 385,785 + -0.7 385,785 + +0.1 385,807 + +0.6 385,812 - +1.7 385,895 + -0.6 385,895 + -0.4 385,907 + -1.9 385,909 + -0.2 385,912 - -1.4 385,919 - -1.6 386,000 + -0.7 386,001 - +0.2 386,058 - -0.4 386,067 + +0.8 386,067 + +0.0 386,080 + -2.7 386,087 + -0.4 386,087 + -0.8 386,087 + -0.8 386,096 + -1.2 386,099 + -1.2 386,099 + +0.0 386,099 + +2.2 386,244 - BACOVA_02066 0.24 +0.9 386,246 + BACOVA_02066 0.25 +1.9 386,246 + BACOVA_02066 0.25 +0.1 386,257 + BACOVA_02066 0.26 -2.2 386,312 + BACOVA_02066 0.34 -0.1 386,313 - BACOVA_02066 0.34 +1.7 386,325 + BACOVA_02066 0.36 -0.1 386,326 - BACOVA_02066 0.36 +0.0 386,338 + BACOVA_02066 0.38 -0.8 386,339 - BACOVA_02066 0.38 +0.0 386,339 - BACOVA_02066 0.38 +0.1 386,339 - BACOVA_02066 0.38 -2.0 386,339 - BACOVA_02066 0.38 -0.4 386,340 + BACOVA_02066 0.38 -1.8 386,385 + BACOVA_02066 0.44 -1.0 386,405 - BACOVA_02066 0.47 +1.1 386,448 + BACOVA_02066 0.53 -0.3 386,501 - BACOVA_02066 0.61 -0.1 386,501 - BACOVA_02066 0.61 +1.3 386,501 - BACOVA_02066 0.61 +2.5 386,503 - BACOVA_02066 0.61 -0.2 386,518 + BACOVA_02066 0.63 -1.1 386,518 + BACOVA_02066 0.63 +0.2 386,586 - BACOVA_02066 0.73 +1.7 386,600 + BACOVA_02066 0.75 +0.1 386,600 - BACOVA_02066 0.75 -0.4 386,603 - BACOVA_02066 0.75 +0.8 386,603 - BACOVA_02066 0.75 -0.3 386,618 + BACOVA_02066 0.77 +2.2 386,619 - BACOVA_02066 0.77 +1.3 386,691 - BACOVA_02066 0.88 -0.7 386,762 - -0.3 386,762 - -0.2 386,763 + +0.9 386,763 + +0.8 386,763 + -0.8 386,763 + -0.4 386,763 + -3.0 386,764 - +0.3 386,767 + +1.5 386,767 + +1.5 386,767 + +0.6 386,768 - -1.9 386,768 - -0.8 386,768 - +1.8 386,780 + -0.2 386,804 + +0.1 386,805 - -0.1 386,821 - +0.0 386,821 - +1.0 386,917 + +0.2 386,921 + -0.4 386,929 - +1.5 386,949 - +2.0 386,957 + +0.5 386,974 - -1.5 386,974 - +0.1 386,974 - +0.5 386,988 + -1.1 387,000 + +0.2 387,001 - -1.4 387,014 - -0.7 387,021 + +0.7 387,035 - +0.9 387,092 - +1.2 387,097 + -1.7 387,097 + -0.8 387,109 + +0.6 387,110 - -1.3 387,111 + +0.4 387,111 + -0.9 387,111 + +0.5 387,112 - -0.6 387,112 - +0.1 387,112 - +0.5 387,112 - +1.8 387,121 + -0.4 387,141 + +1.7 387,141 + -1.3 387,141 + -1.7 387,146 - -1.3 387,221 + BACOVA_02067 0.12 +0.7 387,229 + BACOVA_02067 0.13 +0.6 387,257 + BACOVA_02067 0.15 -0.0 387,257 + BACOVA_02067 0.15 -1.3 387,258 - BACOVA_02067 0.15 +0.1 387,258 - BACOVA_02067 0.15 -1.4 387,326 - BACOVA_02067 0.19 +0.9 387,326 - BACOVA_02067 0.19 +0.2 387,338 + BACOVA_02067 0.20 -1.5 387,338 + BACOVA_02067 0.20 -1.0 387,463 + BACOVA_02067 0.28 +1.0 387,509 + BACOVA_02067 0.31 -0.5 387,510 - BACOVA_02067 0.31 +0.1 387,510 - BACOVA_02067 0.31 +0.4 387,518 + BACOVA_02067 0.32 +0.2 387,519 - BACOVA_02067 0.32 -0.2 387,519 - BACOVA_02067 0.32 -0.9 387,581 - BACOVA_02067 0.36 +0.9 387,605 - BACOVA_02067 0.37 -0.5 387,674 - BACOVA_02067 0.42 +0.7 387,674 - BACOVA_02067 0.42 -0.4 387,714 - BACOVA_02067 0.44 -0.3 387,718 + BACOVA_02067 0.44 -0.1 387,719 - BACOVA_02067 0.44 +0.8
Or see this region's nucleotide sequence