Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02031 and BACOVA_02032 are separated by 7 nucleotides BACOVA_02032 and BACOVA_02033 are separated by 92 nucleotides BACOVA_02033 and BACOVA_02034 are separated by 13 nucleotides BACOVA_02034 and BACOVA_02035 are separated by 7 nucleotides
BACOVA_02031: BACOVA_02031 - inositol monophosphatase family protein, at 334,453 to 335,256
_02031
BACOVA_02032: BACOVA_02032 - hypothetical protein, at 335,264 to 335,404
_02032
BACOVA_02033: BACOVA_02033 - hypothetical protein, at 335,497 to 337,026
_02033
BACOVA_02034: BACOVA_02034 - hypothetical protein, at 337,040 to 337,819
_02034
BACOVA_02035: BACOVA_02035 - endonuclease/exonuclease/phosphatase family protein, at 337,827 to 338,600
_02035
Position (kb) 335
336
337
338 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 334.527 kb on + strand at 334.528 kb on - strand at 334.528 kb on - strand at 334.528 kb on - strand at 334.670 kb on + strand, within BACOVA_02031 at 334.671 kb on - strand, within BACOVA_02031 at 334.708 kb on - strand, within BACOVA_02031 at 334.725 kb on - strand, within BACOVA_02031 at 334.760 kb on + strand, within BACOVA_02031 at 334.775 kb on + strand, within BACOVA_02031 at 334.882 kb on + strand, within BACOVA_02031 at 334.901 kb on + strand, within BACOVA_02031 at 334.901 kb on + strand, within BACOVA_02031 at 334.936 kb on + strand, within BACOVA_02031 at 334.937 kb on - strand, within BACOVA_02031 at 334.975 kb on - strand, within BACOVA_02031 at 334.975 kb on - strand, within BACOVA_02031 at 334.976 kb on + strand, within BACOVA_02031 at 334.976 kb on + strand, within BACOVA_02031 at 334.977 kb on - strand, within BACOVA_02031 at 335.015 kb on + strand, within BACOVA_02031 at 335.030 kb on + strand, within BACOVA_02031 at 335.083 kb on - strand, within BACOVA_02031 at 335.083 kb on - strand, within BACOVA_02031 at 335.124 kb on - strand, within BACOVA_02031 at 335.124 kb on - strand, within BACOVA_02031 at 335.132 kb on + strand, within BACOVA_02031 at 335.132 kb on + strand, within BACOVA_02031 at 335.133 kb on - strand, within BACOVA_02031 at 335.133 kb on - strand, within BACOVA_02031 at 335.224 kb on + strand at 335.235 kb on + strand at 335.235 kb on + strand at 335.236 kb on - strand at 335.259 kb on - strand at 335.356 kb on + strand, within BACOVA_02032 at 335.380 kb on + strand, within BACOVA_02032 at 335.380 kb on + strand, within BACOVA_02032 at 335.381 kb on - strand, within BACOVA_02032 at 335.381 kb on - strand, within BACOVA_02032 at 335.384 kb on + strand, within BACOVA_02032 at 335.385 kb on + strand, within BACOVA_02032 at 335.396 kb on + strand at 335.423 kb on + strand at 335.458 kb on - strand at 335.482 kb on + strand at 335.483 kb on - strand at 335.489 kb on + strand at 335.492 kb on + strand at 335.492 kb on + strand at 335.493 kb on - strand at 335.529 kb on + strand at 335.530 kb on - strand at 335.530 kb on - strand at 335.537 kb on + strand at 335.609 kb on - strand at 335.620 kb on - strand at 335.625 kb on + strand at 335.626 kb on - strand at 335.629 kb on + strand at 335.630 kb on - strand at 335.634 kb on + strand at 335.634 kb on + strand at 335.650 kb on + strand, within BACOVA_02033 at 335.651 kb on - strand, within BACOVA_02033 at 335.677 kb on - strand, within BACOVA_02033 at 335.697 kb on - strand, within BACOVA_02033 at 335.712 kb on + strand, within BACOVA_02033 at 335.724 kb on + strand, within BACOVA_02033 at 335.725 kb on - strand, within BACOVA_02033 at 335.725 kb on - strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.727 kb on - strand, within BACOVA_02033 at 335.727 kb on - strand, within BACOVA_02033 at 335.727 kb on - strand, within BACOVA_02033 at 335.740 kb on + strand, within BACOVA_02033 at 335.802 kb on + strand, within BACOVA_02033 at 335.817 kb on + strand, within BACOVA_02033 at 335.817 kb on + strand, within BACOVA_02033 at 335.818 kb on - strand, within BACOVA_02033 at 335.821 kb on + strand, within BACOVA_02033 at 335.834 kb on - strand, within BACOVA_02033 at 335.892 kb on + strand, within BACOVA_02033 at 335.892 kb on + strand, within BACOVA_02033 at 335.905 kb on - strand, within BACOVA_02033 at 335.921 kb on - strand, within BACOVA_02033 at 335.923 kb on - strand, within BACOVA_02033 at 335.946 kb on + strand, within BACOVA_02033 at 335.946 kb on + strand, within BACOVA_02033 at 335.985 kb on - strand, within BACOVA_02033 at 336.078 kb on + strand, within BACOVA_02033 at 336.078 kb on + strand, within BACOVA_02033 at 336.079 kb on - strand, within BACOVA_02033 at 336.079 kb on - strand, within BACOVA_02033 at 336.098 kb on - strand, within BACOVA_02033 at 336.143 kb on - strand, within BACOVA_02033 at 336.145 kb on + strand, within BACOVA_02033 at 336.145 kb on + strand, within BACOVA_02033 at 336.146 kb on - strand, within BACOVA_02033 at 336.146 kb on - strand, within BACOVA_02033 at 336.166 kb on + strand, within BACOVA_02033 at 336.167 kb on - strand, within BACOVA_02033 at 336.181 kb on + strand, within BACOVA_02033 at 336.192 kb on + strand, within BACOVA_02033 at 336.192 kb on + strand, within BACOVA_02033 at 336.192 kb on + strand, within BACOVA_02033 at 336.294 kb on + strand, within BACOVA_02033 at 336.327 kb on + strand, within BACOVA_02033 at 336.327 kb on + strand, within BACOVA_02033 at 336.327 kb on + strand, within BACOVA_02033 at 336.327 kb on + strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.363 kb on + strand, within BACOVA_02033 at 336.429 kb on + strand, within BACOVA_02033 at 336.429 kb on + strand, within BACOVA_02033 at 336.429 kb on + strand, within BACOVA_02033 at 336.430 kb on - strand, within BACOVA_02033 at 336.430 kb on - strand, within BACOVA_02033 at 336.431 kb on + strand, within BACOVA_02033 at 336.451 kb on + strand, within BACOVA_02033 at 336.456 kb on + strand, within BACOVA_02033 at 336.468 kb on + strand, within BACOVA_02033 at 336.468 kb on + strand, within BACOVA_02033 at 336.468 kb on + strand, within BACOVA_02033 at 336.478 kb on - strand, within BACOVA_02033 at 336.483 kb on + strand, within BACOVA_02033 at 336.484 kb on - strand, within BACOVA_02033 at 336.484 kb on - strand, within BACOVA_02033 at 336.484 kb on - strand, within BACOVA_02033 at 336.508 kb on + strand, within BACOVA_02033 at 336.539 kb on - strand, within BACOVA_02033 at 336.600 kb on + strand, within BACOVA_02033 at 336.601 kb on - strand, within BACOVA_02033 at 336.604 kb on + strand, within BACOVA_02033 at 336.604 kb on + strand, within BACOVA_02033 at 336.605 kb on - strand, within BACOVA_02033 at 336.605 kb on - strand, within BACOVA_02033 at 336.709 kb on - strand, within BACOVA_02033 at 336.723 kb on + strand, within BACOVA_02033 at 336.724 kb on - strand, within BACOVA_02033 at 336.727 kb on + strand, within BACOVA_02033 at 336.727 kb on + strand, within BACOVA_02033 at 336.727 kb on + strand, within BACOVA_02033 at 336.799 kb on - strand, within BACOVA_02033 at 336.799 kb on - strand, within BACOVA_02033 at 336.800 kb on - strand, within BACOVA_02033 at 336.803 kb on + strand, within BACOVA_02033 at 336.803 kb on + strand, within BACOVA_02033 at 336.803 kb on + strand, within BACOVA_02033 at 336.804 kb on - strand, within BACOVA_02033 at 336.804 kb on - strand, within BACOVA_02033 at 336.804 kb on - strand, within BACOVA_02033 at 336.804 kb on - strand, within BACOVA_02033 at 336.806 kb on - strand, within BACOVA_02033 at 336.806 kb on - strand, within BACOVA_02033 at 336.806 kb on - strand, within BACOVA_02033 at 336.806 kb on - strand, within BACOVA_02033 at 336.807 kb on + strand, within BACOVA_02033 at 336.807 kb on + strand, within BACOVA_02033 at 336.807 kb on + strand, within BACOVA_02033 at 336.807 kb on + strand, within BACOVA_02033 at 336.808 kb on - strand, within BACOVA_02033 at 336.815 kb on - strand, within BACOVA_02033 at 336.815 kb on - strand, within BACOVA_02033 at 336.844 kb on + strand, within BACOVA_02033 at 336.844 kb on + strand, within BACOVA_02033 at 336.844 kb on + strand, within BACOVA_02033 at 336.864 kb on - strand, within BACOVA_02033 at 336.877 kb on + strand at 336.877 kb on + strand at 336.902 kb on - strand at 336.906 kb on + strand at 336.917 kb on + strand at 336.992 kb on - strand at 337.015 kb on - strand at 337.015 kb on - strand at 337.015 kb on - strand at 337.076 kb on + strand at 337.077 kb on - strand at 337.124 kb on - strand, within BACOVA_02034 at 337.144 kb on + strand, within BACOVA_02034 at 337.144 kb on + strand, within BACOVA_02034 at 337.145 kb on - strand, within BACOVA_02034 at 337.216 kb on + strand, within BACOVA_02034 at 337.217 kb on - strand, within BACOVA_02034 at 337.234 kb on + strand, within BACOVA_02034 at 337.242 kb on - strand, within BACOVA_02034 at 337.316 kb on + strand, within BACOVA_02034 at 337.317 kb on - strand, within BACOVA_02034 at 337.334 kb on + strand, within BACOVA_02034 at 337.358 kb on - strand, within BACOVA_02034 at 337.358 kb on - strand, within BACOVA_02034 at 337.362 kb on - strand, within BACOVA_02034 at 337.419 kb on + strand, within BACOVA_02034 at 337.420 kb on - strand, within BACOVA_02034 at 337.439 kb on - strand, within BACOVA_02034 at 337.489 kb on + strand, within BACOVA_02034 at 337.490 kb on - strand, within BACOVA_02034 at 337.531 kb on + strand, within BACOVA_02034 at 337.553 kb on + strand, within BACOVA_02034 at 337.554 kb on - strand, within BACOVA_02034 at 337.643 kb on - strand, within BACOVA_02034 at 337.649 kb on - strand, within BACOVA_02034 at 337.658 kb on - strand, within BACOVA_02034 at 337.691 kb on + strand, within BACOVA_02034 at 337.700 kb on - strand, within BACOVA_02034 at 337.744 kb on + strand at 337.756 kb on + strand at 337.787 kb on + strand at 337.789 kb on + strand at 337.789 kb on + strand at 337.790 kb on - strand at 337.803 kb on - strand at 337.820 kb on - strand at 337.916 kb on + strand, within BACOVA_02035 at 337.916 kb on + strand, within BACOVA_02035 at 337.935 kb on + strand, within BACOVA_02035 at 337.937 kb on + strand, within BACOVA_02035 at 337.937 kb on + strand, within BACOVA_02035 at 337.982 kb on + strand, within BACOVA_02035 at 337.982 kb on + strand, within BACOVA_02035 at 337.983 kb on - strand, within BACOVA_02035
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 334,527 + -0.1 334,528 - +1.2 334,528 - +0.3 334,528 - -0.1 334,670 + BACOVA_02031 0.27 +0.8 334,671 - BACOVA_02031 0.27 -0.5 334,708 - BACOVA_02031 0.32 -0.4 334,725 - BACOVA_02031 0.34 -0.4 334,760 + BACOVA_02031 0.38 +0.5 334,775 + BACOVA_02031 0.40 -0.4 334,882 + BACOVA_02031 0.53 -0.2 334,901 + BACOVA_02031 0.56 -0.0 334,901 + BACOVA_02031 0.56 +1.5 334,936 + BACOVA_02031 0.60 -0.2 334,937 - BACOVA_02031 0.60 +0.5 334,975 - BACOVA_02031 0.65 +0.9 334,975 - BACOVA_02031 0.65 +2.0 334,976 + BACOVA_02031 0.65 +0.4 334,976 + BACOVA_02031 0.65 -0.1 334,977 - BACOVA_02031 0.65 +0.5 335,015 + BACOVA_02031 0.70 +0.7 335,030 + BACOVA_02031 0.72 +0.1 335,083 - BACOVA_02031 0.78 +0.1 335,083 - BACOVA_02031 0.78 -0.2 335,124 - BACOVA_02031 0.83 +1.7 335,124 - BACOVA_02031 0.83 -0.9 335,132 + BACOVA_02031 0.84 -0.2 335,132 + BACOVA_02031 0.84 -1.1 335,133 - BACOVA_02031 0.85 +0.4 335,133 - BACOVA_02031 0.85 -3.1 335,224 + +1.1 335,235 + -0.2 335,235 + -0.9 335,236 - +0.7 335,259 - +2.8 335,356 + BACOVA_02032 0.65 +0.6 335,380 + BACOVA_02032 0.82 -1.1 335,380 + BACOVA_02032 0.82 +0.2 335,381 - BACOVA_02032 0.83 -0.9 335,381 - BACOVA_02032 0.83 -0.7 335,384 + BACOVA_02032 0.85 -0.2 335,385 + BACOVA_02032 0.86 +1.2 335,396 + +2.2 335,423 + +1.3 335,458 - -2.2 335,482 + +0.2 335,483 - +0.5 335,489 + +0.4 335,492 + +0.2 335,492 + +0.6 335,493 - -1.1 335,529 + +1.5 335,530 - -1.5 335,530 - -0.6 335,537 + +0.5 335,609 - -1.1 335,620 - +0.4 335,625 + +0.8 335,626 - +0.5 335,629 + -0.5 335,630 - +1.0 335,634 + -1.7 335,634 + +1.8 335,650 + BACOVA_02033 0.10 -0.8 335,651 - BACOVA_02033 0.10 +1.5 335,677 - BACOVA_02033 0.12 -0.0 335,697 - BACOVA_02033 0.13 -1.3 335,712 + BACOVA_02033 0.14 -1.8 335,724 + BACOVA_02033 0.15 -0.9 335,725 - BACOVA_02033 0.15 -0.9 335,725 - BACOVA_02033 0.15 +0.3 335,726 + BACOVA_02033 0.15 -0.9 335,726 + BACOVA_02033 0.15 +1.0 335,726 + BACOVA_02033 0.15 +0.8 335,726 + BACOVA_02033 0.15 -0.0 335,727 - BACOVA_02033 0.15 -0.4 335,727 - BACOVA_02033 0.15 -0.8 335,727 - BACOVA_02033 0.15 -0.1 335,740 + BACOVA_02033 0.16 +0.7 335,802 + BACOVA_02033 0.20 -0.2 335,817 + BACOVA_02033 0.21 +0.5 335,817 + BACOVA_02033 0.21 +0.3 335,818 - BACOVA_02033 0.21 +1.9 335,821 + BACOVA_02033 0.21 +0.1 335,834 - BACOVA_02033 0.22 -0.1 335,892 + BACOVA_02033 0.26 -1.9 335,892 + BACOVA_02033 0.26 -1.3 335,905 - BACOVA_02033 0.27 +0.1 335,921 - BACOVA_02033 0.28 -0.3 335,923 - BACOVA_02033 0.28 +0.7 335,946 + BACOVA_02033 0.29 +0.0 335,946 + BACOVA_02033 0.29 -0.4 335,985 - BACOVA_02033 0.32 +1.2 336,078 + BACOVA_02033 0.38 +0.2 336,078 + BACOVA_02033 0.38 +1.7 336,079 - BACOVA_02033 0.38 +0.6 336,079 - BACOVA_02033 0.38 -0.0 336,098 - BACOVA_02033 0.39 +0.4 336,143 - BACOVA_02033 0.42 +0.2 336,145 + BACOVA_02033 0.42 +0.9 336,145 + BACOVA_02033 0.42 +0.9 336,146 - BACOVA_02033 0.42 -1.2 336,146 - BACOVA_02033 0.42 +0.6 336,166 + BACOVA_02033 0.44 +3.3 336,167 - BACOVA_02033 0.44 -0.2 336,181 + BACOVA_02033 0.45 +0.9 336,192 + BACOVA_02033 0.45 -0.2 336,192 + BACOVA_02033 0.45 +0.7 336,192 + BACOVA_02033 0.45 +0.7 336,294 + BACOVA_02033 0.52 -0.9 336,327 + BACOVA_02033 0.54 +0.7 336,327 + BACOVA_02033 0.54 -1.1 336,327 + BACOVA_02033 0.54 +2.1 336,327 + BACOVA_02033 0.54 -0.6 336,328 - BACOVA_02033 0.54 +1.1 336,328 - BACOVA_02033 0.54 -0.3 336,328 - BACOVA_02033 0.54 -0.9 336,328 - BACOVA_02033 0.54 +0.5 336,328 - BACOVA_02033 0.54 +1.6 336,363 + BACOVA_02033 0.57 -2.0 336,429 + BACOVA_02033 0.61 -0.3 336,429 + BACOVA_02033 0.61 -1.6 336,429 + BACOVA_02033 0.61 -0.1 336,430 - BACOVA_02033 0.61 -0.5 336,430 - BACOVA_02033 0.61 -3.4 336,431 + BACOVA_02033 0.61 -0.6 336,451 + BACOVA_02033 0.62 -0.4 336,456 + BACOVA_02033 0.63 +1.0 336,468 + BACOVA_02033 0.63 -0.1 336,468 + BACOVA_02033 0.63 -0.6 336,468 + BACOVA_02033 0.63 -0.3 336,478 - BACOVA_02033 0.64 -0.1 336,483 + BACOVA_02033 0.64 +0.7 336,484 - BACOVA_02033 0.65 +0.7 336,484 - BACOVA_02033 0.65 +1.6 336,484 - BACOVA_02033 0.65 +0.6 336,508 + BACOVA_02033 0.66 -0.3 336,539 - BACOVA_02033 0.68 +0.3 336,600 + BACOVA_02033 0.72 +0.1 336,601 - BACOVA_02033 0.72 +0.8 336,604 + BACOVA_02033 0.72 -0.9 336,604 + BACOVA_02033 0.72 -0.1 336,605 - BACOVA_02033 0.72 +0.5 336,605 - BACOVA_02033 0.72 -1.5 336,709 - BACOVA_02033 0.79 +0.2 336,723 + BACOVA_02033 0.80 -1.3 336,724 - BACOVA_02033 0.80 -0.2 336,727 + BACOVA_02033 0.80 +0.7 336,727 + BACOVA_02033 0.80 -0.8 336,727 + BACOVA_02033 0.80 -0.4 336,799 - BACOVA_02033 0.85 +0.2 336,799 - BACOVA_02033 0.85 -0.2 336,800 - BACOVA_02033 0.85 -0.8 336,803 + BACOVA_02033 0.85 -0.3 336,803 + BACOVA_02033 0.85 +0.3 336,803 + BACOVA_02033 0.85 -1.6 336,804 - BACOVA_02033 0.85 +1.6 336,804 - BACOVA_02033 0.85 +0.7 336,804 - BACOVA_02033 0.85 -0.6 336,804 - BACOVA_02033 0.85 +0.4 336,806 - BACOVA_02033 0.86 +0.9 336,806 - BACOVA_02033 0.86 -0.2 336,806 - BACOVA_02033 0.86 -0.3 336,806 - BACOVA_02033 0.86 -0.4 336,807 + BACOVA_02033 0.86 +0.3 336,807 + BACOVA_02033 0.86 -0.3 336,807 + BACOVA_02033 0.86 +0.4 336,807 + BACOVA_02033 0.86 -0.7 336,808 - BACOVA_02033 0.86 -0.1 336,815 - BACOVA_02033 0.86 +2.7 336,815 - BACOVA_02033 0.86 +0.1 336,844 + BACOVA_02033 0.88 +1.0 336,844 + BACOVA_02033 0.88 -0.9 336,844 + BACOVA_02033 0.88 +0.1 336,864 - BACOVA_02033 0.89 -1.0 336,877 + +0.2 336,877 + +0.6 336,902 - -0.9 336,906 + -0.2 336,917 + +0.6 336,992 - -1.7 337,015 - +2.0 337,015 - -0.3 337,015 - -1.0 337,076 + -0.6 337,077 - -0.3 337,124 - BACOVA_02034 0.11 +0.4 337,144 + BACOVA_02034 0.13 -1.0 337,144 + BACOVA_02034 0.13 -0.1 337,145 - BACOVA_02034 0.13 +2.2 337,216 + BACOVA_02034 0.23 +0.9 337,217 - BACOVA_02034 0.23 -0.1 337,234 + BACOVA_02034 0.25 -0.6 337,242 - BACOVA_02034 0.26 +0.9 337,316 + BACOVA_02034 0.35 +0.6 337,317 - BACOVA_02034 0.36 -1.0 337,334 + BACOVA_02034 0.38 +1.8 337,358 - BACOVA_02034 0.41 -0.4 337,358 - BACOVA_02034 0.41 -0.8 337,362 - BACOVA_02034 0.41 -3.5 337,419 + BACOVA_02034 0.49 +0.9 337,420 - BACOVA_02034 0.49 +0.6 337,439 - BACOVA_02034 0.51 -0.0 337,489 + BACOVA_02034 0.58 -3.9 337,490 - BACOVA_02034 0.58 +1.2 337,531 + BACOVA_02034 0.63 +0.3 337,553 + BACOVA_02034 0.66 +1.2 337,554 - BACOVA_02034 0.66 +0.0 337,643 - BACOVA_02034 0.77 +0.8 337,649 - BACOVA_02034 0.78 +1.3 337,658 - BACOVA_02034 0.79 +0.3 337,691 + BACOVA_02034 0.83 +0.7 337,700 - BACOVA_02034 0.85 -0.1 337,744 + +1.2 337,756 + -0.7 337,787 + +0.1 337,789 + +0.8 337,789 + +1.6 337,790 - -1.1 337,803 - -1.6 337,820 - +1.2 337,916 + BACOVA_02035 0.11 +0.4 337,916 + BACOVA_02035 0.11 -0.9 337,935 + BACOVA_02035 0.14 +0.8 337,937 + BACOVA_02035 0.14 -0.3 337,937 + BACOVA_02035 0.14 +0.1 337,982 + BACOVA_02035 0.20 +1.0 337,982 + BACOVA_02035 0.20 -1.5 337,983 - BACOVA_02035 0.20 +0.8
Or see this region's nucleotide sequence