Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02030 and BACOVA_02031 are separated by 30 nucleotides BACOVA_02031 and BACOVA_02032 are separated by 7 nucleotides BACOVA_02032 and BACOVA_02033 are separated by 92 nucleotides
BACOVA_02030: BACOVA_02030 - comF family protein, at 333,718 to 334,422
_02030
BACOVA_02031: BACOVA_02031 - inositol monophosphatase family protein, at 334,453 to 335,256
_02031
BACOVA_02032: BACOVA_02032 - hypothetical protein, at 335,264 to 335,404
_02032
BACOVA_02033: BACOVA_02033 - hypothetical protein, at 335,497 to 337,026
_02033
Position (kb) 335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 334.275 kb on - strand, within BACOVA_02030 at 334.297 kb on - strand, within BACOVA_02030 at 334.297 kb on - strand, within BACOVA_02030 at 334.299 kb on + strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.300 kb on - strand, within BACOVA_02030 at 334.308 kb on + strand, within BACOVA_02030 at 334.314 kb on + strand, within BACOVA_02030 at 334.315 kb on - strand, within BACOVA_02030 at 334.315 kb on - strand, within BACOVA_02030 at 334.334 kb on - strand, within BACOVA_02030 at 334.378 kb on + strand at 334.379 kb on - strand at 334.379 kb on - strand at 334.389 kb on + strand at 334.389 kb on + strand at 334.390 kb on - strand at 334.390 kb on - strand at 334.422 kb on + strand at 334.425 kb on + strand at 334.426 kb on - strand at 334.428 kb on + strand at 334.429 kb on - strand at 334.443 kb on - strand at 334.448 kb on - strand at 334.454 kb on + strand at 334.454 kb on + strand at 334.458 kb on + strand at 334.527 kb on + strand at 334.528 kb on - strand at 334.528 kb on - strand at 334.528 kb on - strand at 334.670 kb on + strand, within BACOVA_02031 at 334.671 kb on - strand, within BACOVA_02031 at 334.708 kb on - strand, within BACOVA_02031 at 334.725 kb on - strand, within BACOVA_02031 at 334.760 kb on + strand, within BACOVA_02031 at 334.775 kb on + strand, within BACOVA_02031 at 334.882 kb on + strand, within BACOVA_02031 at 334.901 kb on + strand, within BACOVA_02031 at 334.901 kb on + strand, within BACOVA_02031 at 334.936 kb on + strand, within BACOVA_02031 at 334.937 kb on - strand, within BACOVA_02031 at 334.975 kb on - strand, within BACOVA_02031 at 334.975 kb on - strand, within BACOVA_02031 at 334.976 kb on + strand, within BACOVA_02031 at 334.976 kb on + strand, within BACOVA_02031 at 334.977 kb on - strand, within BACOVA_02031 at 335.015 kb on + strand, within BACOVA_02031 at 335.030 kb on + strand, within BACOVA_02031 at 335.083 kb on - strand, within BACOVA_02031 at 335.083 kb on - strand, within BACOVA_02031 at 335.124 kb on - strand, within BACOVA_02031 at 335.124 kb on - strand, within BACOVA_02031 at 335.132 kb on + strand, within BACOVA_02031 at 335.132 kb on + strand, within BACOVA_02031 at 335.133 kb on - strand, within BACOVA_02031 at 335.133 kb on - strand, within BACOVA_02031 at 335.224 kb on + strand at 335.235 kb on + strand at 335.235 kb on + strand at 335.236 kb on - strand at 335.259 kb on - strand at 335.356 kb on + strand, within BACOVA_02032 at 335.380 kb on + strand, within BACOVA_02032 at 335.380 kb on + strand, within BACOVA_02032 at 335.381 kb on - strand, within BACOVA_02032 at 335.381 kb on - strand, within BACOVA_02032 at 335.384 kb on + strand, within BACOVA_02032 at 335.385 kb on + strand, within BACOVA_02032 at 335.396 kb on + strand at 335.423 kb on + strand at 335.458 kb on - strand at 335.482 kb on + strand at 335.483 kb on - strand at 335.489 kb on + strand at 335.492 kb on + strand at 335.492 kb on + strand at 335.493 kb on - strand at 335.529 kb on + strand at 335.530 kb on - strand at 335.530 kb on - strand at 335.537 kb on + strand at 335.609 kb on - strand at 335.620 kb on - strand at 335.625 kb on + strand at 335.626 kb on - strand at 335.629 kb on + strand at 335.630 kb on - strand at 335.634 kb on + strand at 335.634 kb on + strand at 335.650 kb on + strand, within BACOVA_02033 at 335.651 kb on - strand, within BACOVA_02033 at 335.677 kb on - strand, within BACOVA_02033 at 335.697 kb on - strand, within BACOVA_02033 at 335.712 kb on + strand, within BACOVA_02033 at 335.724 kb on + strand, within BACOVA_02033 at 335.725 kb on - strand, within BACOVA_02033 at 335.725 kb on - strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.726 kb on + strand, within BACOVA_02033 at 335.727 kb on - strand, within BACOVA_02033 at 335.727 kb on - strand, within BACOVA_02033 at 335.727 kb on - strand, within BACOVA_02033 at 335.740 kb on + strand, within BACOVA_02033 at 335.802 kb on + strand, within BACOVA_02033 at 335.817 kb on + strand, within BACOVA_02033 at 335.817 kb on + strand, within BACOVA_02033 at 335.818 kb on - strand, within BACOVA_02033 at 335.821 kb on + strand, within BACOVA_02033 at 335.834 kb on - strand, within BACOVA_02033 at 335.892 kb on + strand, within BACOVA_02033 at 335.892 kb on + strand, within BACOVA_02033 at 335.905 kb on - strand, within BACOVA_02033 at 335.921 kb on - strand, within BACOVA_02033 at 335.923 kb on - strand, within BACOVA_02033 at 335.946 kb on + strand, within BACOVA_02033 at 335.946 kb on + strand, within BACOVA_02033 at 335.985 kb on - strand, within BACOVA_02033 at 336.078 kb on + strand, within BACOVA_02033 at 336.078 kb on + strand, within BACOVA_02033 at 336.079 kb on - strand, within BACOVA_02033 at 336.079 kb on - strand, within BACOVA_02033 at 336.098 kb on - strand, within BACOVA_02033 at 336.143 kb on - strand, within BACOVA_02033 at 336.145 kb on + strand, within BACOVA_02033 at 336.145 kb on + strand, within BACOVA_02033 at 336.146 kb on - strand, within BACOVA_02033 at 336.146 kb on - strand, within BACOVA_02033 at 336.166 kb on + strand, within BACOVA_02033 at 336.167 kb on - strand, within BACOVA_02033 at 336.181 kb on + strand, within BACOVA_02033 at 336.192 kb on + strand, within BACOVA_02033 at 336.192 kb on + strand, within BACOVA_02033 at 336.192 kb on + strand, within BACOVA_02033 at 336.294 kb on + strand, within BACOVA_02033 at 336.327 kb on + strand, within BACOVA_02033 at 336.327 kb on + strand, within BACOVA_02033 at 336.327 kb on + strand, within BACOVA_02033 at 336.327 kb on + strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.328 kb on - strand, within BACOVA_02033 at 336.363 kb on + strand, within BACOVA_02033
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 334,275 - BACOVA_02030 0.79 -0.6 334,297 - BACOVA_02030 0.82 -0.1 334,297 - BACOVA_02030 0.82 -0.3 334,299 + BACOVA_02030 0.82 -0.7 334,300 - BACOVA_02030 0.83 -0.1 334,300 - BACOVA_02030 0.83 -1.1 334,300 - BACOVA_02030 0.83 -2.1 334,300 - BACOVA_02030 0.83 -0.1 334,300 - BACOVA_02030 0.83 +0.6 334,308 + BACOVA_02030 0.84 -2.8 334,314 + BACOVA_02030 0.85 +0.2 334,315 - BACOVA_02030 0.85 +1.2 334,315 - BACOVA_02030 0.85 +0.9 334,334 - BACOVA_02030 0.87 -0.0 334,378 + -0.9 334,379 - -1.1 334,379 - +0.2 334,389 + +0.1 334,389 + +0.5 334,390 - -0.0 334,390 - +0.5 334,422 + -0.1 334,425 + -1.4 334,426 - +0.5 334,428 + -0.4 334,429 - +1.5 334,443 - +0.3 334,448 - +2.9 334,454 + +0.6 334,454 + -0.2 334,458 + +0.5 334,527 + -0.1 334,528 - +1.2 334,528 - +0.3 334,528 - -0.1 334,670 + BACOVA_02031 0.27 +0.8 334,671 - BACOVA_02031 0.27 -0.5 334,708 - BACOVA_02031 0.32 -0.4 334,725 - BACOVA_02031 0.34 -0.4 334,760 + BACOVA_02031 0.38 +0.5 334,775 + BACOVA_02031 0.40 -0.4 334,882 + BACOVA_02031 0.53 -0.2 334,901 + BACOVA_02031 0.56 -0.0 334,901 + BACOVA_02031 0.56 +1.5 334,936 + BACOVA_02031 0.60 -0.2 334,937 - BACOVA_02031 0.60 +0.5 334,975 - BACOVA_02031 0.65 +0.9 334,975 - BACOVA_02031 0.65 +2.0 334,976 + BACOVA_02031 0.65 +0.4 334,976 + BACOVA_02031 0.65 -0.1 334,977 - BACOVA_02031 0.65 +0.5 335,015 + BACOVA_02031 0.70 +0.7 335,030 + BACOVA_02031 0.72 +0.1 335,083 - BACOVA_02031 0.78 +0.1 335,083 - BACOVA_02031 0.78 -0.2 335,124 - BACOVA_02031 0.83 +1.7 335,124 - BACOVA_02031 0.83 -0.9 335,132 + BACOVA_02031 0.84 -0.2 335,132 + BACOVA_02031 0.84 -1.1 335,133 - BACOVA_02031 0.85 +0.4 335,133 - BACOVA_02031 0.85 -3.1 335,224 + +1.1 335,235 + -0.2 335,235 + -0.9 335,236 - +0.7 335,259 - +2.8 335,356 + BACOVA_02032 0.65 +0.6 335,380 + BACOVA_02032 0.82 -1.1 335,380 + BACOVA_02032 0.82 +0.2 335,381 - BACOVA_02032 0.83 -0.9 335,381 - BACOVA_02032 0.83 -0.7 335,384 + BACOVA_02032 0.85 -0.2 335,385 + BACOVA_02032 0.86 +1.2 335,396 + +2.2 335,423 + +1.3 335,458 - -2.2 335,482 + +0.2 335,483 - +0.5 335,489 + +0.4 335,492 + +0.2 335,492 + +0.6 335,493 - -1.1 335,529 + +1.5 335,530 - -1.5 335,530 - -0.6 335,537 + +0.5 335,609 - -1.1 335,620 - +0.4 335,625 + +0.8 335,626 - +0.5 335,629 + -0.5 335,630 - +1.0 335,634 + -1.7 335,634 + +1.8 335,650 + BACOVA_02033 0.10 -0.8 335,651 - BACOVA_02033 0.10 +1.5 335,677 - BACOVA_02033 0.12 -0.0 335,697 - BACOVA_02033 0.13 -1.3 335,712 + BACOVA_02033 0.14 -1.8 335,724 + BACOVA_02033 0.15 -0.9 335,725 - BACOVA_02033 0.15 -0.9 335,725 - BACOVA_02033 0.15 +0.3 335,726 + BACOVA_02033 0.15 -0.9 335,726 + BACOVA_02033 0.15 +1.0 335,726 + BACOVA_02033 0.15 +0.8 335,726 + BACOVA_02033 0.15 -0.0 335,727 - BACOVA_02033 0.15 -0.4 335,727 - BACOVA_02033 0.15 -0.8 335,727 - BACOVA_02033 0.15 -0.1 335,740 + BACOVA_02033 0.16 +0.7 335,802 + BACOVA_02033 0.20 -0.2 335,817 + BACOVA_02033 0.21 +0.5 335,817 + BACOVA_02033 0.21 +0.3 335,818 - BACOVA_02033 0.21 +1.9 335,821 + BACOVA_02033 0.21 +0.1 335,834 - BACOVA_02033 0.22 -0.1 335,892 + BACOVA_02033 0.26 -1.9 335,892 + BACOVA_02033 0.26 -1.3 335,905 - BACOVA_02033 0.27 +0.1 335,921 - BACOVA_02033 0.28 -0.3 335,923 - BACOVA_02033 0.28 +0.7 335,946 + BACOVA_02033 0.29 +0.0 335,946 + BACOVA_02033 0.29 -0.4 335,985 - BACOVA_02033 0.32 +1.2 336,078 + BACOVA_02033 0.38 +0.2 336,078 + BACOVA_02033 0.38 +1.7 336,079 - BACOVA_02033 0.38 +0.6 336,079 - BACOVA_02033 0.38 -0.0 336,098 - BACOVA_02033 0.39 +0.4 336,143 - BACOVA_02033 0.42 +0.2 336,145 + BACOVA_02033 0.42 +0.9 336,145 + BACOVA_02033 0.42 +0.9 336,146 - BACOVA_02033 0.42 -1.2 336,146 - BACOVA_02033 0.42 +0.6 336,166 + BACOVA_02033 0.44 +3.3 336,167 - BACOVA_02033 0.44 -0.2 336,181 + BACOVA_02033 0.45 +0.9 336,192 + BACOVA_02033 0.45 -0.2 336,192 + BACOVA_02033 0.45 +0.7 336,192 + BACOVA_02033 0.45 +0.7 336,294 + BACOVA_02033 0.52 -0.9 336,327 + BACOVA_02033 0.54 +0.7 336,327 + BACOVA_02033 0.54 -1.1 336,327 + BACOVA_02033 0.54 +2.1 336,327 + BACOVA_02033 0.54 -0.6 336,328 - BACOVA_02033 0.54 +1.1 336,328 - BACOVA_02033 0.54 -0.3 336,328 - BACOVA_02033 0.54 -0.9 336,328 - BACOVA_02033 0.54 +0.5 336,328 - BACOVA_02033 0.54 +1.6 336,363 + BACOVA_02033 0.57 -2.0
Or see this region's nucleotide sequence