Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01917

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01915 and BACOVA_01916 are separated by 115 nucleotidesBACOVA_01916 and BACOVA_01917 are separated by 140 nucleotidesBACOVA_01917 and BACOVA_01918 overlap by 37 nucleotides BACOVA_01915: BACOVA_01915 - shikimate kinase, at 125,078 to 125,605 _01915 BACOVA_01916: BACOVA_01916 - hypothetical protein, at 125,721 to 126,323 _01916 BACOVA_01917: BACOVA_01917 - hypothetical protein, at 126,464 to 127,099 _01917 BACOVA_01918: BACOVA_01918 - putative dolichyl-phosphate-mannose-protein mannosyltransferase, at 127,063 to 128,901 _01918 Position (kb) 126 127 128Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 125.501 kb on - strand, within BACOVA_01915at 125.596 kb on + strandat 125.597 kb on - strandat 125.605 kb on + strandat 125.640 kb on - strandat 125.664 kb on - strandat 125.680 kb on + strandat 125.681 kb on - strandat 125.681 kb on - strandat 125.870 kb on + strand, within BACOVA_01916at 125.871 kb on - strand, within BACOVA_01916at 125.871 kb on - strand, within BACOVA_01916at 125.871 kb on - strand, within BACOVA_01916at 125.872 kb on + strand, within BACOVA_01916at 125.872 kb on + strand, within BACOVA_01916at 125.872 kb on + strand, within BACOVA_01916at 125.873 kb on - strand, within BACOVA_01916at 125.873 kb on - strand, within BACOVA_01916at 125.873 kb on - strand, within BACOVA_01916at 125.898 kb on + strand, within BACOVA_01916at 125.922 kb on - strand, within BACOVA_01916at 125.925 kb on + strand, within BACOVA_01916at 125.926 kb on - strand, within BACOVA_01916at 126.066 kb on + strand, within BACOVA_01916at 126.066 kb on + strand, within BACOVA_01916at 126.067 kb on - strand, within BACOVA_01916at 126.067 kb on - strand, within BACOVA_01916at 126.162 kb on + strand, within BACOVA_01916at 126.162 kb on + strand, within BACOVA_01916at 126.179 kb on + strand, within BACOVA_01916at 126.254 kb on + strand, within BACOVA_01916at 126.255 kb on - strand, within BACOVA_01916at 126.255 kb on - strand, within BACOVA_01916at 126.281 kb on - strandat 126.308 kb on + strandat 126.323 kb on + strandat 126.339 kb on - strandat 126.343 kb on + strandat 126.344 kb on - strandat 126.344 kb on - strandat 126.408 kb on + strandat 127.124 kb on + strandat 127.166 kb on + strandat 127.169 kb on + strandat 127.169 kb on + strandat 127.185 kb on + strandat 127.185 kb on + strandat 127.186 kb on - strandat 127.188 kb on + strandat 127.189 kb on - strandat 127.216 kb on + strandat 127.216 kb on + strandat 127.246 kb on - strandat 127.315 kb on + strand, within BACOVA_01918at 127.494 kb on + strand, within BACOVA_01918at 127.548 kb on + strand, within BACOVA_01918at 127.553 kb on + strand, within BACOVA_01918at 127.583 kb on - strand, within BACOVA_01918at 127.591 kb on + strand, within BACOVA_01918at 127.592 kb on - strand, within BACOVA_01918at 127.600 kb on + strand, within BACOVA_01918at 127.680 kb on + strand, within BACOVA_01918at 127.680 kb on + strand, within BACOVA_01918at 127.680 kb on + strand, within BACOVA_01918at 127.684 kb on - strand, within BACOVA_01918at 127.684 kb on - strand, within BACOVA_01918at 127.684 kb on - strand, within BACOVA_01918at 127.697 kb on + strand, within BACOVA_01918at 127.719 kb on - strand, within BACOVA_01918at 127.754 kb on + strand, within BACOVA_01918at 127.754 kb on + strand, within BACOVA_01918at 127.755 kb on - strand, within BACOVA_01918at 127.801 kb on + strand, within BACOVA_01918at 127.845 kb on - strand, within BACOVA_01918at 127.848 kb on + strand, within BACOVA_01918at 127.849 kb on - strand, within BACOVA_01918at 127.879 kb on - strand, within BACOVA_01918at 127.888 kb on + strand, within BACOVA_01918at 127.889 kb on - strand, within BACOVA_01918at 127.931 kb on + strand, within BACOVA_01918at 127.931 kb on + strand, within BACOVA_01918at 127.932 kb on - strand, within BACOVA_01918at 127.962 kb on - strand, within BACOVA_01918at 128.069 kb on + strand, within BACOVA_01918at 128.070 kb on - strand, within BACOVA_01918

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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125,501 - BACOVA_01915 0.80 -0.8
125,596 + -0.6
125,597 - -0.6
125,605 + -1.8
125,640 - +0.5
125,664 - -1.7
125,680 + +0.1
125,681 - -2.2
125,681 - +1.0
125,870 + BACOVA_01916 0.25 -1.9
125,871 - BACOVA_01916 0.25 +1.4
125,871 - BACOVA_01916 0.25 -0.9
125,871 - BACOVA_01916 0.25 +0.2
125,872 + BACOVA_01916 0.25 +0.1
125,872 + BACOVA_01916 0.25 +0.9
125,872 + BACOVA_01916 0.25 +0.1
125,873 - BACOVA_01916 0.25 +0.9
125,873 - BACOVA_01916 0.25 +1.0
125,873 - BACOVA_01916 0.25 +0.5
125,898 + BACOVA_01916 0.29 -0.4
125,922 - BACOVA_01916 0.33 -0.4
125,925 + BACOVA_01916 0.34 +0.3
125,926 - BACOVA_01916 0.34 +1.0
126,066 + BACOVA_01916 0.57 -1.0
126,066 + BACOVA_01916 0.57 -1.5
126,067 - BACOVA_01916 0.57 +1.2
126,067 - BACOVA_01916 0.57 -0.6
126,162 + BACOVA_01916 0.73 +0.0
126,162 + BACOVA_01916 0.73 -0.6
126,179 + BACOVA_01916 0.76 +1.9
126,254 + BACOVA_01916 0.88 +0.6
126,255 - BACOVA_01916 0.89 +0.3
126,255 - BACOVA_01916 0.89 +1.7
126,281 - -1.6
126,308 + +0.7
126,323 + -0.6
126,339 - -0.1
126,343 + -0.9
126,344 - +0.4
126,344 - -0.7
126,408 + -1.2
127,124 + -0.2
127,166 + -0.9
127,169 + -4.3
127,169 + -2.3
127,185 + -3.1
127,185 + -4.3
127,186 - -2.7
127,188 + -2.1
127,189 - -4.4
127,216 + -3.9
127,216 + -1.8
127,246 - -2.4
127,315 + BACOVA_01918 0.14 -4.1
127,494 + BACOVA_01918 0.23 -2.9
127,548 + BACOVA_01918 0.26 -2.3
127,553 + BACOVA_01918 0.27 -4.9
127,583 - BACOVA_01918 0.28 -2.1
127,591 + BACOVA_01918 0.29 -2.2
127,592 - BACOVA_01918 0.29 -2.7
127,600 + BACOVA_01918 0.29 -1.5
127,680 + BACOVA_01918 0.34 -3.2
127,680 + BACOVA_01918 0.34 -3.0
127,680 + BACOVA_01918 0.34 -2.6
127,684 - BACOVA_01918 0.34 -2.8
127,684 - BACOVA_01918 0.34 -2.3
127,684 - BACOVA_01918 0.34 -1.4
127,697 + BACOVA_01918 0.34 -2.2
127,719 - BACOVA_01918 0.36 -2.9
127,754 + BACOVA_01918 0.38 -2.6
127,754 + BACOVA_01918 0.38 -4.4
127,755 - BACOVA_01918 0.38 -4.7
127,801 + BACOVA_01918 0.40 -2.2
127,845 - BACOVA_01918 0.43 -2.6
127,848 + BACOVA_01918 0.43 -4.8
127,849 - BACOVA_01918 0.43 +0.0
127,879 - BACOVA_01918 0.44 -3.2
127,888 + BACOVA_01918 0.45 -2.7
127,889 - BACOVA_01918 0.45 -3.3
127,931 + BACOVA_01918 0.47 -2.9
127,931 + BACOVA_01918 0.47 -4.6
127,932 - BACOVA_01918 0.47 -0.4
127,962 - BACOVA_01918 0.49 -2.0
128,069 + BACOVA_01918 0.55 +0.3
128,070 - BACOVA_01918 0.55 -0.8

Or see this region's nucleotide sequence