Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01873

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01872 and BACOVA_01873 are separated by 197 nucleotidesBACOVA_01873 and BACOVA_01874 are separated by 141 nucleotides BACOVA_01872: BACOVA_01872 - hypothetical protein, at 69,976 to 71,001 _01872 BACOVA_01873: BACOVA_01873 - DNA repair protein RecO, at 71,199 to 71,927 _01873 BACOVA_01874: BACOVA_01874 - site-specific recombinase, phage integrase family, at 72,069 to 73,028 _01874 Position (kb) 71 72Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 70.240 kb on + strand, within BACOVA_01872at 70.244 kb on + strand, within BACOVA_01872at 70.245 kb on - strand, within BACOVA_01872at 70.245 kb on - strand, within BACOVA_01872at 70.245 kb on - strand, within BACOVA_01872at 70.257 kb on + strand, within BACOVA_01872at 70.258 kb on - strand, within BACOVA_01872at 70.264 kb on + strand, within BACOVA_01872at 70.332 kb on + strand, within BACOVA_01872at 70.333 kb on - strand, within BACOVA_01872at 70.367 kb on + strand, within BACOVA_01872at 70.372 kb on - strand, within BACOVA_01872at 70.372 kb on - strand, within BACOVA_01872at 70.387 kb on + strand, within BACOVA_01872at 70.388 kb on - strand, within BACOVA_01872at 70.388 kb on - strand, within BACOVA_01872at 70.388 kb on - strand, within BACOVA_01872at 70.445 kb on + strand, within BACOVA_01872at 70.461 kb on - strand, within BACOVA_01872at 70.461 kb on - strand, within BACOVA_01872at 70.467 kb on + strand, within BACOVA_01872at 70.467 kb on + strand, within BACOVA_01872at 70.468 kb on - strand, within BACOVA_01872at 70.510 kb on + strand, within BACOVA_01872at 70.510 kb on + strand, within BACOVA_01872at 70.526 kb on + strand, within BACOVA_01872at 70.716 kb on - strand, within BACOVA_01872at 70.716 kb on - strand, within BACOVA_01872at 70.718 kb on - strand, within BACOVA_01872at 70.722 kb on + strand, within BACOVA_01872at 70.722 kb on + strand, within BACOVA_01872at 70.723 kb on - strand, within BACOVA_01872at 70.724 kb on + strand, within BACOVA_01872at 70.724 kb on + strand, within BACOVA_01872at 70.749 kb on + strand, within BACOVA_01872at 70.751 kb on + strand, within BACOVA_01872at 70.751 kb on + strand, within BACOVA_01872at 70.752 kb on - strand, within BACOVA_01872at 70.752 kb on - strand, within BACOVA_01872at 70.752 kb on - strand, within BACOVA_01872at 70.858 kb on + strand, within BACOVA_01872at 70.859 kb on - strand, within BACOVA_01872at 70.859 kb on - strand, within BACOVA_01872at 70.870 kb on - strand, within BACOVA_01872at 70.878 kb on - strand, within BACOVA_01872at 70.913 kb on + strandat 70.915 kb on + strandat 70.919 kb on + strandat 70.930 kb on - strandat 70.978 kb on - strandat 70.978 kb on - strandat 70.983 kb on - strandat 71.002 kb on - strandat 71.014 kb on + strandat 71.015 kb on - strandat 71.024 kb on + strandat 71.025 kb on - strandat 71.038 kb on + strandat 71.039 kb on - strandat 71.050 kb on - strandat 71.050 kb on - strandat 71.065 kb on - strandat 71.083 kb on + strandat 71.084 kb on - strandat 71.085 kb on + strandat 71.086 kb on - strandat 71.095 kb on - strandat 71.095 kb on - strandat 71.169 kb on + strandat 71.170 kb on - strandat 71.196 kb on + strandat 71.200 kb on + strandat 71.266 kb on + strandat 71.267 kb on - strandat 71.269 kb on + strandat 71.338 kb on + strand, within BACOVA_01873at 71.387 kb on + strand, within BACOVA_01873at 71.388 kb on - strand, within BACOVA_01873at 71.389 kb on + strand, within BACOVA_01873at 71.390 kb on - strand, within BACOVA_01873at 71.390 kb on - strand, within BACOVA_01873at 71.401 kb on - strand, within BACOVA_01873at 71.401 kb on - strand, within BACOVA_01873at 71.401 kb on - strand, within BACOVA_01873at 71.437 kb on - strand, within BACOVA_01873at 71.446 kb on + strand, within BACOVA_01873at 71.462 kb on - strand, within BACOVA_01873at 71.565 kb on - strand, within BACOVA_01873at 71.565 kb on - strand, within BACOVA_01873at 71.579 kb on - strand, within BACOVA_01873at 71.661 kb on - strand, within BACOVA_01873at 71.662 kb on + strand, within BACOVA_01873at 71.672 kb on - strand, within BACOVA_01873at 71.677 kb on - strand, within BACOVA_01873at 71.732 kb on + strand, within BACOVA_01873at 71.820 kb on + strand, within BACOVA_01873at 71.855 kb on - strandat 71.855 kb on - strandat 71.858 kb on + strandat 71.859 kb on - strandat 71.859 kb on - strandat 71.859 kb on - strandat 71.870 kb on + strandat 71.871 kb on - strandat 71.876 kb on + strandat 71.877 kb on - strandat 71.895 kb on - strandat 71.928 kb on - strandat 72.023 kb on + strandat 72.023 kb on + strandat 72.024 kb on - strandat 72.032 kb on + strandat 72.035 kb on - strandat 72.046 kb on - strandat 72.052 kb on + strandat 72.053 kb on - strandat 72.117 kb on + strandat 72.118 kb on - strandat 72.166 kb on - strand, within BACOVA_01874at 72.168 kb on - strand, within BACOVA_01874at 72.304 kb on - strand, within BACOVA_01874at 72.305 kb on + strand, within BACOVA_01874at 72.306 kb on - strand, within BACOVA_01874at 72.311 kb on + strand, within BACOVA_01874at 72.311 kb on + strand, within BACOVA_01874at 72.312 kb on - strand, within BACOVA_01874at 72.312 kb on - strand, within BACOVA_01874at 72.312 kb on - strand, within BACOVA_01874at 72.327 kb on + strand, within BACOVA_01874at 72.327 kb on + strand, within BACOVA_01874at 72.328 kb on - strand, within BACOVA_01874at 72.328 kb on - strand, within BACOVA_01874at 72.328 kb on - strand, within BACOVA_01874at 72.329 kb on + strand, within BACOVA_01874at 72.340 kb on + strand, within BACOVA_01874at 72.386 kb on - strand, within BACOVA_01874at 72.386 kb on - strand, within BACOVA_01874at 72.386 kb on - strand, within BACOVA_01874at 72.397 kb on + strand, within BACOVA_01874at 72.403 kb on + strand, within BACOVA_01874at 72.403 kb on + strand, within BACOVA_01874at 72.440 kb on + strand, within BACOVA_01874at 72.440 kb on + strand, within BACOVA_01874at 72.440 kb on + strand, within BACOVA_01874at 72.441 kb on - strand, within BACOVA_01874at 72.441 kb on - strand, within BACOVA_01874at 72.476 kb on - strand, within BACOVA_01874at 72.578 kb on + strand, within BACOVA_01874at 72.578 kb on + strand, within BACOVA_01874at 72.583 kb on - strand, within BACOVA_01874at 72.611 kb on - strand, within BACOVA_01874at 72.698 kb on - strand, within BACOVA_01874at 72.701 kb on + strand, within BACOVA_01874at 72.704 kb on + strand, within BACOVA_01874at 72.705 kb on - strand, within BACOVA_01874at 72.743 kb on - strand, within BACOVA_01874at 72.744 kb on + strand, within BACOVA_01874at 72.744 kb on + strand, within BACOVA_01874at 72.744 kb on + strand, within BACOVA_01874at 72.744 kb on + strand, within BACOVA_01874at 72.746 kb on + strand, within BACOVA_01874at 72.746 kb on + strand, within BACOVA_01874at 72.747 kb on - strand, within BACOVA_01874at 72.747 kb on - strand, within BACOVA_01874at 72.834 kb on + strand, within BACOVA_01874at 72.836 kb on + strand, within BACOVA_01874at 72.836 kb on + strand, within BACOVA_01874at 72.837 kb on - strand, within BACOVA_01874at 72.871 kb on - strand, within BACOVA_01874at 72.914 kb on + strand, within BACOVA_01874at 72.915 kb on - strand, within BACOVA_01874

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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70,240 + BACOVA_01872 0.26 -1.2
70,244 + BACOVA_01872 0.26 +0.1
70,245 - BACOVA_01872 0.26 +1.2
70,245 - BACOVA_01872 0.26 +0.8
70,245 - BACOVA_01872 0.26 -0.4
70,257 + BACOVA_01872 0.27 -0.3
70,258 - BACOVA_01872 0.27 +0.3
70,264 + BACOVA_01872 0.28 -1.1
70,332 + BACOVA_01872 0.35 +0.0
70,333 - BACOVA_01872 0.35 -1.0
70,367 + BACOVA_01872 0.38 -1.7
70,372 - BACOVA_01872 0.39 +0.5
70,372 - BACOVA_01872 0.39 +1.0
70,387 + BACOVA_01872 0.40 +0.6
70,388 - BACOVA_01872 0.40 -0.2
70,388 - BACOVA_01872 0.40 -0.6
70,388 - BACOVA_01872 0.40 +1.0
70,445 + BACOVA_01872 0.46 -1.3
70,461 - BACOVA_01872 0.47 -0.9
70,461 - BACOVA_01872 0.47 +0.2
70,467 + BACOVA_01872 0.48 +0.3
70,467 + BACOVA_01872 0.48 -1.1
70,468 - BACOVA_01872 0.48 -1.5
70,510 + BACOVA_01872 0.52 +0.9
70,510 + BACOVA_01872 0.52 -0.4
70,526 + BACOVA_01872 0.54 +0.2
70,716 - BACOVA_01872 0.72 +0.7
70,716 - BACOVA_01872 0.72 +1.3
70,718 - BACOVA_01872 0.72 +0.5
70,722 + BACOVA_01872 0.73 +0.1
70,722 + BACOVA_01872 0.73 -0.4
70,723 - BACOVA_01872 0.73 -1.6
70,724 + BACOVA_01872 0.73 +1.1
70,724 + BACOVA_01872 0.73 +1.3
70,749 + BACOVA_01872 0.75 +0.2
70,751 + BACOVA_01872 0.76 -0.2
70,751 + BACOVA_01872 0.76 -1.9
70,752 - BACOVA_01872 0.76 -0.7
70,752 - BACOVA_01872 0.76 +1.2
70,752 - BACOVA_01872 0.76 +0.1
70,858 + BACOVA_01872 0.86 +1.1
70,859 - BACOVA_01872 0.86 -0.8
70,859 - BACOVA_01872 0.86 -0.1
70,870 - BACOVA_01872 0.87 -0.9
70,878 - BACOVA_01872 0.88 -0.1
70,913 + +1.5
70,915 + +0.2
70,919 + +1.8
70,930 - -0.0
70,978 - -0.3
70,978 - +0.7
70,983 - -0.5
71,002 - -1.1
71,014 + -0.5
71,015 - +0.5
71,024 + -0.2
71,025 - -1.5
71,038 + -0.4
71,039 - -0.5
71,050 - -1.1
71,050 - -0.5
71,065 - -0.1
71,083 + -0.8
71,084 - -0.4
71,085 + -0.5
71,086 - -0.6
71,095 - -0.5
71,095 - -1.6
71,169 + -0.6
71,170 - -0.7
71,196 + -0.2
71,200 + +1.0
71,266 + -0.2
71,267 - -0.6
71,269 + +0.7
71,338 + BACOVA_01873 0.19 -1.6
71,387 + BACOVA_01873 0.26 -0.3
71,388 - BACOVA_01873 0.26 +0.7
71,389 + BACOVA_01873 0.26 -0.4
71,390 - BACOVA_01873 0.26 +1.6
71,390 - BACOVA_01873 0.26 +0.8
71,401 - BACOVA_01873 0.28 -0.6
71,401 - BACOVA_01873 0.28 +0.4
71,401 - BACOVA_01873 0.28 +1.8
71,437 - BACOVA_01873 0.33 -1.1
71,446 + BACOVA_01873 0.34 +0.7
71,462 - BACOVA_01873 0.36 +1.5
71,565 - BACOVA_01873 0.50 -3.9
71,565 - BACOVA_01873 0.50 +0.9
71,579 - BACOVA_01873 0.52 -1.1
71,661 - BACOVA_01873 0.63 -1.1
71,662 + BACOVA_01873 0.64 +0.7
71,672 - BACOVA_01873 0.65 -0.7
71,677 - BACOVA_01873 0.66 -0.9
71,732 + BACOVA_01873 0.73 -0.1
71,820 + BACOVA_01873 0.85 +0.5
71,855 - -1.2
71,855 - +0.2
71,858 + -0.9
71,859 - -1.2
71,859 - +1.2
71,859 - +0.2
71,870 + -1.3
71,871 - +1.1
71,876 + -0.6
71,877 - -0.1
71,895 - -1.1
71,928 - +0.3
72,023 + +0.5
72,023 + -1.1
72,024 - -0.6
72,032 + -0.1
72,035 - +1.4
72,046 - -0.1
72,052 + +0.6
72,053 - -0.4
72,117 + -1.7
72,118 - +0.6
72,166 - BACOVA_01874 0.10 -0.7
72,168 - BACOVA_01874 0.10 -0.2
72,304 - BACOVA_01874 0.24 -0.8
72,305 + BACOVA_01874 0.25 +0.0
72,306 - BACOVA_01874 0.25 +0.5
72,311 + BACOVA_01874 0.25 +0.5
72,311 + BACOVA_01874 0.25 +1.2
72,312 - BACOVA_01874 0.25 -0.5
72,312 - BACOVA_01874 0.25 +0.2
72,312 - BACOVA_01874 0.25 -0.2
72,327 + BACOVA_01874 0.27 +0.8
72,327 + BACOVA_01874 0.27 -0.3
72,328 - BACOVA_01874 0.27 +2.5
72,328 - BACOVA_01874 0.27 +2.2
72,328 - BACOVA_01874 0.27 +0.6
72,329 + BACOVA_01874 0.27 -0.1
72,340 + BACOVA_01874 0.28 +0.2
72,386 - BACOVA_01874 0.33 +0.6
72,386 - BACOVA_01874 0.33 -0.8
72,386 - BACOVA_01874 0.33 -2.1
72,397 + BACOVA_01874 0.34 +0.6
72,403 + BACOVA_01874 0.35 -3.4
72,403 + BACOVA_01874 0.35 +0.7
72,440 + BACOVA_01874 0.39 +1.2
72,440 + BACOVA_01874 0.39 -0.2
72,440 + BACOVA_01874 0.39 -0.1
72,441 - BACOVA_01874 0.39 -1.7
72,441 - BACOVA_01874 0.39 +0.3
72,476 - BACOVA_01874 0.42 -0.0
72,578 + BACOVA_01874 0.53 -0.7
72,578 + BACOVA_01874 0.53 -0.5
72,583 - BACOVA_01874 0.54 -0.8
72,611 - BACOVA_01874 0.56 -2.9
72,698 - BACOVA_01874 0.66 +0.2
72,701 + BACOVA_01874 0.66 -0.5
72,704 + BACOVA_01874 0.66 -1.0
72,705 - BACOVA_01874 0.66 -3.9
72,743 - BACOVA_01874 0.70 -0.6
72,744 + BACOVA_01874 0.70 +1.3
72,744 + BACOVA_01874 0.70 +1.0
72,744 + BACOVA_01874 0.70 -2.9
72,744 + BACOVA_01874 0.70 -0.0
72,746 + BACOVA_01874 0.71 +0.7
72,746 + BACOVA_01874 0.71 +1.4
72,747 - BACOVA_01874 0.71 -2.0
72,747 - BACOVA_01874 0.71 +0.3
72,834 + BACOVA_01874 0.80 -1.2
72,836 + BACOVA_01874 0.80 -0.1
72,836 + BACOVA_01874 0.80 +0.9
72,837 - BACOVA_01874 0.80 +1.4
72,871 - BACOVA_01874 0.84 +0.7
72,914 + BACOVA_01874 0.88 -1.9
72,915 - BACOVA_01874 0.88 -1.1

Or see this region's nucleotide sequence