Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00605 and BACOVA_00606 are separated by 374 nucleotides BACOVA_00606 and BACOVA_00607 are separated by 14 nucleotides BACOVA_00607 and BACOVA_00608 are separated by 212 nucleotides
BACOVA_00605: BACOVA_00605 - phosphate transport system regulatory protein PhoU, at 41,735 to 42,424
_00605
BACOVA_00606: BACOVA_00606 - riboflavin synthase, alpha subunit, at 42,799 to 43,401
_00606
BACOVA_00607: BACOVA_00607 - nitroreductase family protein, at 43,416 to 43,979
_00607
BACOVA_00608: BACOVA_00608 - WD40-like protein, at 44,192 to 47,476
_00608
Position (kb) 42
43
44 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 41.805 kb on - strand, within BACOVA_00605 at 41.910 kb on + strand, within BACOVA_00605 at 41.911 kb on - strand, within BACOVA_00605 at 41.915 kb on - strand, within BACOVA_00605 at 41.980 kb on + strand, within BACOVA_00605 at 41.981 kb on - strand, within BACOVA_00605 at 42.045 kb on + strand, within BACOVA_00605 at 42.248 kb on + strand, within BACOVA_00605 at 42.248 kb on + strand, within BACOVA_00605 at 42.250 kb on + strand, within BACOVA_00605 at 42.278 kb on - strand, within BACOVA_00605 at 42.285 kb on + strand, within BACOVA_00605 at 42.291 kb on + strand, within BACOVA_00605 at 42.331 kb on + strand, within BACOVA_00605 at 42.474 kb on + strand at 42.501 kb on + strand at 42.501 kb on + strand at 42.528 kb on + strand at 42.570 kb on + strand at 42.581 kb on + strand at 42.601 kb on - strand at 42.602 kb on + strand at 42.603 kb on - strand at 42.753 kb on + strand at 43.442 kb on + strand at 43.493 kb on + strand, within BACOVA_00607 at 43.691 kb on - strand, within BACOVA_00607 at 43.704 kb on - strand, within BACOVA_00607 at 43.706 kb on + strand, within BACOVA_00607 at 43.706 kb on + strand, within BACOVA_00607 at 43.706 kb on + strand, within BACOVA_00607 at 43.706 kb on + strand, within BACOVA_00607 at 43.707 kb on - strand, within BACOVA_00607 at 43.707 kb on - strand, within BACOVA_00607 at 43.709 kb on - strand, within BACOVA_00607 at 43.709 kb on - strand, within BACOVA_00607 at 43.782 kb on - strand, within BACOVA_00607 at 43.821 kb on - strand, within BACOVA_00607 at 43.866 kb on - strand, within BACOVA_00607 at 43.885 kb on + strand, within BACOVA_00607 at 43.895 kb on + strand, within BACOVA_00607 at 43.895 kb on + strand, within BACOVA_00607 at 43.994 kb on + strand at 44.014 kb on - strand at 44.019 kb on + strand at 44.019 kb on + strand at 44.019 kb on + strand at 44.019 kb on + strand at 44.020 kb on - strand at 44.020 kb on - strand at 44.020 kb on - strand at 44.020 kb on - strand at 44.020 kb on - strand at 44.020 kb on - strand at 44.021 kb on + strand at 44.087 kb on + strand at 44.087 kb on + strand at 44.144 kb on + strand at 44.182 kb on - strand at 44.219 kb on + strand at 44.223 kb on + strand at 44.284 kb on - strand at 44.288 kb on + strand at 44.289 kb on - strand at 44.294 kb on - strand at 44.323 kb on - strand at 44.341 kb on + strand at 44.341 kb on + strand at 44.342 kb on - strand at 44.342 kb on - strand at 44.342 kb on - strand at 44.367 kb on - strand at 44.372 kb on - strand at 44.372 kb on - strand at 44.381 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 41,805 - BACOVA_00605 0.10 -1.4 41,910 + BACOVA_00605 0.25 -1.2 41,911 - BACOVA_00605 0.26 -0.6 41,915 - BACOVA_00605 0.26 -0.1 41,980 + BACOVA_00605 0.36 +0.1 41,981 - BACOVA_00605 0.36 -1.0 42,045 + BACOVA_00605 0.45 -2.9 42,248 + BACOVA_00605 0.74 -0.8 42,248 + BACOVA_00605 0.74 -1.9 42,250 + BACOVA_00605 0.75 -0.5 42,278 - BACOVA_00605 0.79 +1.2 42,285 + BACOVA_00605 0.80 +1.3 42,291 + BACOVA_00605 0.81 -0.2 42,331 + BACOVA_00605 0.86 -2.6 42,474 + -1.8 42,501 + -1.0 42,501 + -2.0 42,528 + +0.0 42,570 + -1.0 42,581 + -4.6 42,601 - -2.3 42,602 + -2.8 42,603 - -2.3 42,753 + +0.1 43,442 + -0.5 43,493 + BACOVA_00607 0.14 -2.2 43,691 - BACOVA_00607 0.49 -1.5 43,704 - BACOVA_00607 0.51 -1.1 43,706 + BACOVA_00607 0.51 +0.2 43,706 + BACOVA_00607 0.51 +0.3 43,706 + BACOVA_00607 0.51 +0.1 43,706 + BACOVA_00607 0.51 -0.3 43,707 - BACOVA_00607 0.52 +1.3 43,707 - BACOVA_00607 0.52 -0.2 43,709 - BACOVA_00607 0.52 -0.5 43,709 - BACOVA_00607 0.52 -0.8 43,782 - BACOVA_00607 0.65 -1.4 43,821 - BACOVA_00607 0.72 -2.2 43,866 - BACOVA_00607 0.80 -2.2 43,885 + BACOVA_00607 0.83 +1.6 43,895 + BACOVA_00607 0.85 -0.3 43,895 + BACOVA_00607 0.85 -0.1 43,994 + -2.0 44,014 - +0.2 44,019 + -0.7 44,019 + +1.3 44,019 + -0.4 44,019 + -0.3 44,020 - -1.5 44,020 - -1.0 44,020 - -1.6 44,020 - -0.8 44,020 - +0.2 44,020 - +1.6 44,021 + +0.3 44,087 + +1.2 44,087 + +0.0 44,144 + +0.8 44,182 - -2.0 44,219 + +0.8 44,223 + -1.1 44,284 - +0.6 44,288 + -1.9 44,289 - +0.4 44,294 - +0.4 44,323 - +1.7 44,341 + +0.7 44,341 + +0.4 44,342 - +0.2 44,342 - -2.8 44,342 - +1.0 44,367 - +0.3 44,372 - -1.8 44,372 - +1.2 44,381 + +0.1
Or see this region's nucleotide sequence