Experiment: Amylopectin from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00511 and BACOVA_00512 are separated by 19 nucleotides BACOVA_00512 and BACOVA_00514 are separated by 104 nucleotides BACOVA_00514 and BACOVA_00513 overlap by 1 nucleotides
BACOVA_00511: BACOVA_00511 - GDP-mannose 4,6-dehydratase, at 8,087 to 9,157
_00511
BACOVA_00512: BACOVA_00512 - NAD dependent epimerase/dehydratase family protein, at 9,177 to 10,247
_00512
BACOVA_00514: BACOVA_00514 - hypothetical protein, at 10,352 to 10,501
_00514
BACOVA_00513: BACOVA_00513 - AMP-binding enzyme, at 10,501 to 12,159
_00513
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 8.177 kb on - strand at 8.178 kb on + strand at 8.179 kb on - strand at 8.179 kb on - strand at 8.213 kb on - strand, within BACOVA_00511 at 8.213 kb on - strand, within BACOVA_00511 at 8.263 kb on + strand, within BACOVA_00511 at 8.279 kb on + strand, within BACOVA_00511 at 8.307 kb on + strand, within BACOVA_00511 at 8.446 kb on - strand, within BACOVA_00511 at 8.550 kb on - strand, within BACOVA_00511 at 8.618 kb on + strand, within BACOVA_00511 at 8.623 kb on + strand, within BACOVA_00511 at 8.623 kb on + strand, within BACOVA_00511 at 8.623 kb on + strand, within BACOVA_00511 at 8.624 kb on - strand, within BACOVA_00511 at 8.624 kb on - strand, within BACOVA_00511 at 8.624 kb on - strand, within BACOVA_00511 at 8.624 kb on - strand, within BACOVA_00511 at 8.642 kb on - strand, within BACOVA_00511 at 8.687 kb on - strand, within BACOVA_00511 at 8.716 kb on + strand, within BACOVA_00511 at 8.716 kb on + strand, within BACOVA_00511 at 8.753 kb on - strand, within BACOVA_00511 at 8.804 kb on - strand, within BACOVA_00511 at 8.812 kb on - strand, within BACOVA_00511 at 8.889 kb on + strand, within BACOVA_00511 at 8.890 kb on - strand, within BACOVA_00511 at 8.890 kb on - strand, within BACOVA_00511 at 8.890 kb on - strand, within BACOVA_00511 at 8.950 kb on + strand, within BACOVA_00511 at 9.041 kb on - strand, within BACOVA_00511 at 9.100 kb on + strand at 9.100 kb on + strand at 9.146 kb on - strand at 9.167 kb on + strand at 10.245 kb on + strand at 10.268 kb on + strand at 10.269 kb on - strand at 10.269 kb on - strand at 10.269 kb on - strand at 10.274 kb on - strand at 10.274 kb on - strand at 10.274 kb on - strand at 10.297 kb on + strand at 10.297 kb on + strand at 10.297 kb on + strand at 10.303 kb on - strand at 10.303 kb on - strand at 10.318 kb on + strand at 10.319 kb on - strand at 10.319 kb on - strand at 10.319 kb on - strand at 10.319 kb on - strand at 10.324 kb on - strand at 10.339 kb on + strand at 10.339 kb on + strand at 10.339 kb on + strand at 10.340 kb on - strand at 10.340 kb on - strand at 10.340 kb on - strand at 10.344 kb on + strand at 10.345 kb on - strand at 10.357 kb on + strand at 10.358 kb on - strand at 10.358 kb on - strand at 10.365 kb on + strand at 10.379 kb on - strand, within BACOVA_00514 at 10.401 kb on - strand, within BACOVA_00514 at 10.439 kb on + strand, within BACOVA_00514 at 10.439 kb on + strand, within BACOVA_00514 at 10.465 kb on + strand, within BACOVA_00514 at 10.517 kb on + strand at 10.522 kb on + strand at 10.533 kb on + strand at 10.575 kb on + strand at 10.575 kb on + strand at 10.575 kb on + strand at 10.596 kb on + strand at 10.596 kb on + strand at 10.596 kb on + strand at 10.666 kb on - strand at 10.719 kb on + strand, within BACOVA_00513 at 10.720 kb on - strand, within BACOVA_00513 at 10.746 kb on - strand, within BACOVA_00513 at 10.776 kb on + strand, within BACOVA_00513 at 10.777 kb on - strand, within BACOVA_00513 at 10.778 kb on + strand, within BACOVA_00513 at 10.778 kb on + strand, within BACOVA_00513 at 10.779 kb on - strand, within BACOVA_00513 at 10.782 kb on + strand, within BACOVA_00513 at 10.783 kb on - strand, within BACOVA_00513 at 10.811 kb on + strand, within BACOVA_00513 at 10.812 kb on - strand, within BACOVA_00513 at 10.820 kb on + strand, within BACOVA_00513 at 10.821 kb on - strand, within BACOVA_00513 at 10.821 kb on - strand, within BACOVA_00513 at 10.827 kb on + strand, within BACOVA_00513 at 10.827 kb on + strand, within BACOVA_00513 at 10.827 kb on + strand, within BACOVA_00513 at 10.828 kb on - strand, within BACOVA_00513 at 10.828 kb on - strand, within BACOVA_00513 at 10.905 kb on - strand, within BACOVA_00513 at 10.930 kb on + strand, within BACOVA_00513 at 11.002 kb on + strand, within BACOVA_00513 at 11.034 kb on + strand, within BACOVA_00513 at 11.042 kb on - strand, within BACOVA_00513 at 11.043 kb on + strand, within BACOVA_00513 at 11.063 kb on - strand, within BACOVA_00513 at 11.075 kb on + strand, within BACOVA_00513 at 11.075 kb on + strand, within BACOVA_00513 at 11.126 kb on + strand, within BACOVA_00513 at 11.126 kb on + strand, within BACOVA_00513 at 11.127 kb on - strand, within BACOVA_00513 at 11.129 kb on + strand, within BACOVA_00513 at 11.129 kb on + strand, within BACOVA_00513 at 11.149 kb on - strand, within BACOVA_00513 at 11.233 kb on + strand, within BACOVA_00513
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C) remove 8,177 - -1.4 8,178 + +0.0 8,179 - -3.6 8,179 - -1.5 8,213 - BACOVA_00511 0.12 -0.8 8,213 - BACOVA_00511 0.12 -4.1 8,263 + BACOVA_00511 0.16 -2.7 8,279 + BACOVA_00511 0.18 -3.6 8,307 + BACOVA_00511 0.21 -2.0 8,446 - BACOVA_00511 0.34 -2.7 8,550 - BACOVA_00511 0.43 +0.0 8,618 + BACOVA_00511 0.50 -2.6 8,623 + BACOVA_00511 0.50 -3.2 8,623 + BACOVA_00511 0.50 +0.0 8,623 + BACOVA_00511 0.50 -1.5 8,624 - BACOVA_00511 0.50 -0.3 8,624 - BACOVA_00511 0.50 -0.8 8,624 - BACOVA_00511 0.50 -1.3 8,624 - BACOVA_00511 0.50 -2.2 8,642 - BACOVA_00511 0.52 -2.1 8,687 - BACOVA_00511 0.56 -4.1 8,716 + BACOVA_00511 0.59 -0.3 8,716 + BACOVA_00511 0.59 -3.5 8,753 - BACOVA_00511 0.62 -0.5 8,804 - BACOVA_00511 0.67 -1.1 8,812 - BACOVA_00511 0.68 -0.8 8,889 + BACOVA_00511 0.75 -0.3 8,890 - BACOVA_00511 0.75 -1.0 8,890 - BACOVA_00511 0.75 -3.1 8,890 - BACOVA_00511 0.75 -1.0 8,950 + BACOVA_00511 0.81 -2.0 9,041 - BACOVA_00511 0.89 -0.8 9,100 + -2.3 9,100 + -1.1 9,146 - -0.5 9,167 + +1.1 10,245 + +1.4 10,268 + -2.2 10,269 - -2.0 10,269 - -2.6 10,269 - +2.7 10,274 - -0.2 10,274 - +0.3 10,274 - +0.8 10,297 + +0.1 10,297 + -0.4 10,297 + +1.7 10,303 - -1.5 10,303 - +0.0 10,318 + +1.0 10,319 - -0.8 10,319 - +1.3 10,319 - -0.5 10,319 - +1.1 10,324 - +0.3 10,339 + -2.0 10,339 + -0.4 10,339 + -0.7 10,340 - +0.2 10,340 - +0.5 10,340 - +0.1 10,344 + -0.8 10,345 - -0.3 10,357 + +0.9 10,358 - +0.3 10,358 - +1.0 10,365 + -1.0 10,379 - BACOVA_00514 0.18 +1.8 10,401 - BACOVA_00514 0.33 -1.7 10,439 + BACOVA_00514 0.58 -1.7 10,439 + BACOVA_00514 0.58 -0.8 10,465 + BACOVA_00514 0.75 -0.2 10,517 + +1.1 10,522 + -0.4 10,533 + +0.4 10,575 + -0.9 10,575 + -1.8 10,575 + -0.5 10,596 + +0.9 10,596 + -1.3 10,596 + +0.5 10,666 - +2.0 10,719 + BACOVA_00513 0.13 +1.0 10,720 - BACOVA_00513 0.13 -1.0 10,746 - BACOVA_00513 0.15 -1.1 10,776 + BACOVA_00513 0.17 +0.2 10,777 - BACOVA_00513 0.17 -2.0 10,778 + BACOVA_00513 0.17 -0.3 10,778 + BACOVA_00513 0.17 +0.1 10,779 - BACOVA_00513 0.17 +0.1 10,782 + BACOVA_00513 0.17 -0.1 10,783 - BACOVA_00513 0.17 -1.3 10,811 + BACOVA_00513 0.19 -0.1 10,812 - BACOVA_00513 0.19 -0.7 10,820 + BACOVA_00513 0.19 +1.4 10,821 - BACOVA_00513 0.19 +0.6 10,821 - BACOVA_00513 0.19 +0.6 10,827 + BACOVA_00513 0.20 -0.3 10,827 + BACOVA_00513 0.20 +0.7 10,827 + BACOVA_00513 0.20 -1.0 10,828 - BACOVA_00513 0.20 +1.2 10,828 - BACOVA_00513 0.20 +0.5 10,905 - BACOVA_00513 0.24 +1.2 10,930 + BACOVA_00513 0.26 -1.8 11,002 + BACOVA_00513 0.30 -0.7 11,034 + BACOVA_00513 0.32 -0.0 11,042 - BACOVA_00513 0.33 -0.2 11,043 + BACOVA_00513 0.33 +0.5 11,063 - BACOVA_00513 0.34 -0.7 11,075 + BACOVA_00513 0.35 -0.7 11,075 + BACOVA_00513 0.35 -1.5 11,126 + BACOVA_00513 0.38 +1.0 11,126 + BACOVA_00513 0.38 -0.8 11,127 - BACOVA_00513 0.38 -0.8 11,129 + BACOVA_00513 0.38 +2.0 11,129 + BACOVA_00513 0.38 -1.4 11,149 - BACOVA_00513 0.39 -1.8 11,233 + BACOVA_00513 0.44 +1.3
Or see this region's nucleotide sequence