Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00348

Experiment: Amylopectin from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00345 and BACOVA_00346 are separated by 134 nucleotidesBACOVA_00346 and BACOVA_00347 are separated by 24 nucleotidesBACOVA_00347 and BACOVA_00348 are separated by 80 nucleotidesBACOVA_00348 and BACOVA_00349 are separated by 72 nucleotides BACOVA_00345: BACOVA_00345 - OmpA family protein, at 28,031 to 29,218 _00345 BACOVA_00346: BACOVA_00346 - hypothetical protein, at 29,353 to 29,463 _00346 BACOVA_00347: BACOVA_00347 - hypothetical protein, at 29,488 to 29,622 _00347 BACOVA_00348: BACOVA_00348 - hypothetical protein, at 29,703 to 29,864 _00348 BACOVA_00349: BACOVA_00349 - hypothetical protein, at 29,937 to 32,282 _00349 Position (kb) 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 28.709 kb on + strand, within BACOVA_00345at 28.713 kb on - strand, within BACOVA_00345at 28.754 kb on - strand, within BACOVA_00345at 28.810 kb on + strand, within BACOVA_00345at 28.810 kb on + strand, within BACOVA_00345at 28.810 kb on + strand, within BACOVA_00345at 28.813 kb on + strand, within BACOVA_00345at 28.822 kb on - strand, within BACOVA_00345at 28.883 kb on - strand, within BACOVA_00345at 28.892 kb on - strand, within BACOVA_00345at 28.892 kb on - strand, within BACOVA_00345at 28.892 kb on - strand, within BACOVA_00345at 28.894 kb on + strand, within BACOVA_00345at 28.895 kb on - strand, within BACOVA_00345at 28.898 kb on - strand, within BACOVA_00345at 28.910 kb on - strand, within BACOVA_00345at 28.971 kb on - strand, within BACOVA_00345at 28.971 kb on - strand, within BACOVA_00345at 28.986 kb on + strand, within BACOVA_00345at 29.005 kb on + strand, within BACOVA_00345at 29.005 kb on + strand, within BACOVA_00345at 29.009 kb on + strand, within BACOVA_00345at 29.010 kb on - strand, within BACOVA_00345at 29.010 kb on - strand, within BACOVA_00345at 29.010 kb on - strand, within BACOVA_00345at 29.025 kb on - strand, within BACOVA_00345at 29.025 kb on - strand, within BACOVA_00345at 29.044 kb on + strand, within BACOVA_00345at 29.115 kb on - strandat 29.193 kb on + strandat 29.193 kb on + strandat 29.194 kb on - strandat 29.197 kb on - strandat 29.216 kb on + strandat 29.217 kb on - strandat 29.225 kb on - strandat 29.302 kb on + strandat 29.347 kb on + strandat 29.350 kb on + strandat 29.351 kb on - strandat 29.351 kb on - strandat 29.386 kb on - strand, within BACOVA_00346at 29.397 kb on + strand, within BACOVA_00346at 29.397 kb on + strand, within BACOVA_00346at 29.425 kb on - strand, within BACOVA_00346at 29.439 kb on + strand, within BACOVA_00346at 29.454 kb on + strandat 29.454 kb on + strandat 29.454 kb on + strandat 29.454 kb on + strandat 29.461 kb on + strandat 29.462 kb on - strandat 29.476 kb on + strandat 29.476 kb on + strandat 29.477 kb on - strandat 29.500 kb on + strandat 29.500 kb on + strandat 29.508 kb on - strand, within BACOVA_00347at 29.530 kb on - strand, within BACOVA_00347at 29.577 kb on + strand, within BACOVA_00347at 29.628 kb on + strandat 29.628 kb on + strandat 29.628 kb on + strandat 29.628 kb on + strandat 29.628 kb on + strandat 29.629 kb on - strandat 29.629 kb on - strandat 29.629 kb on - strandat 29.660 kb on + strandat 29.660 kb on + strandat 29.674 kb on + strandat 29.704 kb on + strandat 29.730 kb on + strand, within BACOVA_00348at 29.738 kb on + strand, within BACOVA_00348at 29.738 kb on + strand, within BACOVA_00348at 29.755 kb on - strand, within BACOVA_00348at 29.755 kb on - strand, within BACOVA_00348at 29.768 kb on + strand, within BACOVA_00348at 29.772 kb on + strand, within BACOVA_00348at 29.772 kb on + strand, within BACOVA_00348at 29.773 kb on - strand, within BACOVA_00348at 29.774 kb on + strand, within BACOVA_00348at 29.790 kb on - strand, within BACOVA_00348at 29.790 kb on - strand, within BACOVA_00348at 29.805 kb on - strand, within BACOVA_00348at 29.901 kb on - strandat 29.947 kb on + strandat 29.947 kb on + strandat 29.948 kb on - strandat 29.951 kb on + strandat 29.951 kb on + strandat 29.951 kb on + strandat 29.956 kb on + strandat 29.959 kb on - strandat 30.047 kb on - strandat 30.067 kb on - strandat 30.103 kb on + strandat 30.144 kb on - strandat 30.144 kb on - strandat 30.144 kb on - strandat 30.191 kb on + strand, within BACOVA_00349at 30.245 kb on + strand, within BACOVA_00349at 30.246 kb on - strand, within BACOVA_00349at 30.345 kb on - strand, within BACOVA_00349at 30.392 kb on + strand, within BACOVA_00349at 30.392 kb on + strand, within BACOVA_00349at 30.393 kb on - strand, within BACOVA_00349at 30.394 kb on + strand, within BACOVA_00349at 30.395 kb on - strand, within BACOVA_00349at 30.410 kb on - strand, within BACOVA_00349at 30.410 kb on - strand, within BACOVA_00349at 30.410 kb on - strand, within BACOVA_00349at 30.426 kb on + strand, within BACOVA_00349at 30.426 kb on + strand, within BACOVA_00349at 30.426 kb on + strand, within BACOVA_00349at 30.427 kb on - strand, within BACOVA_00349at 30.427 kb on - strand, within BACOVA_00349at 30.438 kb on - strand, within BACOVA_00349at 30.469 kb on + strand, within BACOVA_00349at 30.529 kb on - strand, within BACOVA_00349at 30.533 kb on + strand, within BACOVA_00349at 30.533 kb on + strand, within BACOVA_00349at 30.534 kb on - strand, within BACOVA_00349at 30.540 kb on - strand, within BACOVA_00349at 30.540 kb on - strand, within BACOVA_00349at 30.548 kb on - strand, within BACOVA_00349at 30.577 kb on - strand, within BACOVA_00349at 30.606 kb on + strand, within BACOVA_00349at 30.611 kb on + strand, within BACOVA_00349at 30.611 kb on + strand, within BACOVA_00349at 30.611 kb on + strand, within BACOVA_00349at 30.626 kb on + strand, within BACOVA_00349at 30.627 kb on - strand, within BACOVA_00349at 30.627 kb on - strand, within BACOVA_00349at 30.627 kb on - strand, within BACOVA_00349at 30.647 kb on - strand, within BACOVA_00349at 30.659 kb on - strand, within BACOVA_00349at 30.662 kb on + strand, within BACOVA_00349at 30.662 kb on + strand, within BACOVA_00349at 30.662 kb on + strand, within BACOVA_00349at 30.663 kb on - strand, within BACOVA_00349at 30.663 kb on - strand, within BACOVA_00349at 30.663 kb on - strand, within BACOVA_00349at 30.745 kb on + strand, within BACOVA_00349at 30.766 kb on - strand, within BACOVA_00349at 30.783 kb on + strand, within BACOVA_00349at 30.787 kb on + strand, within BACOVA_00349at 30.787 kb on + strand, within BACOVA_00349at 30.787 kb on + strand, within BACOVA_00349at 30.787 kb on + strand, within BACOVA_00349at 30.787 kb on + strand, within BACOVA_00349at 30.787 kb on + strand, within BACOVA_00349at 30.787 kb on + strand, within BACOVA_00349at 30.787 kb on + strand, within BACOVA_00349at 30.788 kb on - strand, within BACOVA_00349at 30.788 kb on - strand, within BACOVA_00349at 30.788 kb on - strand, within BACOVA_00349at 30.788 kb on - strand, within BACOVA_00349at 30.788 kb on - strand, within BACOVA_00349at 30.806 kb on + strand, within BACOVA_00349

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato 2.5 mg/mL (C)
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28,709 + BACOVA_00345 0.57 -0.5
28,713 - BACOVA_00345 0.57 -0.0
28,754 - BACOVA_00345 0.61 -0.6
28,810 + BACOVA_00345 0.66 -3.1
28,810 + BACOVA_00345 0.66 -0.0
28,810 + BACOVA_00345 0.66 -1.6
28,813 + BACOVA_00345 0.66 -0.7
28,822 - BACOVA_00345 0.67 -1.5
28,883 - BACOVA_00345 0.72 -1.6
28,892 - BACOVA_00345 0.72 -1.7
28,892 - BACOVA_00345 0.72 +0.3
28,892 - BACOVA_00345 0.72 -0.1
28,894 + BACOVA_00345 0.73 +1.3
28,895 - BACOVA_00345 0.73 -0.9
28,898 - BACOVA_00345 0.73 -0.6
28,910 - BACOVA_00345 0.74 -2.4
28,971 - BACOVA_00345 0.79 +0.1
28,971 - BACOVA_00345 0.79 -1.8
28,986 + BACOVA_00345 0.80 -0.0
29,005 + BACOVA_00345 0.82 +0.5
29,005 + BACOVA_00345 0.82 -0.8
29,009 + BACOVA_00345 0.82 -1.1
29,010 - BACOVA_00345 0.82 -1.8
29,010 - BACOVA_00345 0.82 +0.2
29,010 - BACOVA_00345 0.82 -0.9
29,025 - BACOVA_00345 0.84 -1.4
29,025 - BACOVA_00345 0.84 -0.9
29,044 + BACOVA_00345 0.85 +0.5
29,115 - -2.7
29,193 + -0.3
29,193 + -0.7
29,194 - -2.1
29,197 - -0.1
29,216 + -0.2
29,217 - -1.5
29,225 - +0.2
29,302 + -1.3
29,347 + -1.2
29,350 + -0.1
29,351 - +0.5
29,351 - -1.3
29,386 - BACOVA_00346 0.30 -0.7
29,397 + BACOVA_00346 0.40 -0.6
29,397 + BACOVA_00346 0.40 -0.1
29,425 - BACOVA_00346 0.65 -1.8
29,439 + BACOVA_00346 0.77 -0.0
29,454 + -0.1
29,454 + -0.2
29,454 + -0.5
29,454 + +0.3
29,461 + +0.4
29,462 - -1.9
29,476 + +1.0
29,476 + +0.5
29,477 - +0.4
29,500 + -1.3
29,500 + +0.4
29,508 - BACOVA_00347 0.15 +0.1
29,530 - BACOVA_00347 0.31 +1.5
29,577 + BACOVA_00347 0.66 -1.5
29,628 + -1.6
29,628 + +2.7
29,628 + -2.1
29,628 + +0.9
29,628 + +2.2
29,629 - -0.6
29,629 - -0.7
29,629 - +0.7
29,660 + +1.6
29,660 + -1.1
29,674 + -1.6
29,704 + -1.0
29,730 + BACOVA_00348 0.17 +0.3
29,738 + BACOVA_00348 0.22 +2.0
29,738 + BACOVA_00348 0.22 -0.3
29,755 - BACOVA_00348 0.32 -0.5
29,755 - BACOVA_00348 0.32 +1.1
29,768 + BACOVA_00348 0.40 -0.9
29,772 + BACOVA_00348 0.43 -2.7
29,772 + BACOVA_00348 0.43 +0.9
29,773 - BACOVA_00348 0.43 -0.6
29,774 + BACOVA_00348 0.44 -2.3
29,790 - BACOVA_00348 0.54 +0.0
29,790 - BACOVA_00348 0.54 -1.2
29,805 - BACOVA_00348 0.63 +0.3
29,901 - +0.6
29,947 + -2.8
29,947 + +1.6
29,948 - +1.8
29,951 + -2.0
29,951 + +0.1
29,951 + -1.8
29,956 + -0.6
29,959 - +0.0
30,047 - +0.1
30,067 - -0.3
30,103 + -0.6
30,144 - +0.6
30,144 - +1.2
30,144 - +0.1
30,191 + BACOVA_00349 0.11 +1.0
30,245 + BACOVA_00349 0.13 -1.2
30,246 - BACOVA_00349 0.13 +0.2
30,345 - BACOVA_00349 0.17 -0.2
30,392 + BACOVA_00349 0.19 +0.3
30,392 + BACOVA_00349 0.19 +1.2
30,393 - BACOVA_00349 0.19 +1.0
30,394 + BACOVA_00349 0.19 -0.3
30,395 - BACOVA_00349 0.20 -1.5
30,410 - BACOVA_00349 0.20 -0.4
30,410 - BACOVA_00349 0.20 +0.1
30,410 - BACOVA_00349 0.20 -0.6
30,426 + BACOVA_00349 0.21 +1.6
30,426 + BACOVA_00349 0.21 -0.6
30,426 + BACOVA_00349 0.21 +1.5
30,427 - BACOVA_00349 0.21 +0.1
30,427 - BACOVA_00349 0.21 +0.0
30,438 - BACOVA_00349 0.21 -0.2
30,469 + BACOVA_00349 0.23 -0.6
30,529 - BACOVA_00349 0.25 +0.0
30,533 + BACOVA_00349 0.25 +0.6
30,533 + BACOVA_00349 0.25 +0.2
30,534 - BACOVA_00349 0.25 +1.5
30,540 - BACOVA_00349 0.26 -1.1
30,540 - BACOVA_00349 0.26 -2.1
30,548 - BACOVA_00349 0.26 +0.5
30,577 - BACOVA_00349 0.27 -0.3
30,606 + BACOVA_00349 0.29 -1.5
30,611 + BACOVA_00349 0.29 +1.8
30,611 + BACOVA_00349 0.29 +0.4
30,611 + BACOVA_00349 0.29 -0.5
30,626 + BACOVA_00349 0.29 +0.1
30,627 - BACOVA_00349 0.29 -0.1
30,627 - BACOVA_00349 0.29 +0.3
30,627 - BACOVA_00349 0.29 -0.6
30,647 - BACOVA_00349 0.30 -1.0
30,659 - BACOVA_00349 0.31 -3.1
30,662 + BACOVA_00349 0.31 -1.1
30,662 + BACOVA_00349 0.31 -1.3
30,662 + BACOVA_00349 0.31 -2.1
30,663 - BACOVA_00349 0.31 +0.1
30,663 - BACOVA_00349 0.31 -2.6
30,663 - BACOVA_00349 0.31 +1.7
30,745 + BACOVA_00349 0.34 -0.2
30,766 - BACOVA_00349 0.35 +0.6
30,783 + BACOVA_00349 0.36 +0.1
30,787 + BACOVA_00349 0.36 -0.8
30,787 + BACOVA_00349 0.36 +1.5
30,787 + BACOVA_00349 0.36 +1.6
30,787 + BACOVA_00349 0.36 -1.7
30,787 + BACOVA_00349 0.36 -1.1
30,787 + BACOVA_00349 0.36 -1.7
30,787 + BACOVA_00349 0.36 +0.0
30,787 + BACOVA_00349 0.36 -0.1
30,788 - BACOVA_00349 0.36 +0.2
30,788 - BACOVA_00349 0.36 -0.1
30,788 - BACOVA_00349 0.36 +1.8
30,788 - BACOVA_00349 0.36 +0.1
30,788 - BACOVA_00349 0.36 -0.3
30,806 + BACOVA_00349 0.37 -0.8

Or see this region's nucleotide sequence